genome.fa.s57.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  44  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7643322--7643484	84	1.9	86	86	5	233	40	19	11	28	1.87
7645300--7645330	16	1.9	16	93	0	53	0	22	0	77	0.77
7652366--7652404	19	2.1	19	100	0	78	38	25	10	25	1.87
7652648--7652683	2	18.0	2	100	0	72	50	0	0	50	1.00
7652683--7652715	2	16.5	2	93	0	57	48	0	51	0	1.00
7657344--7657380	18	2.1	18	94	0	65	43	8	5	43	1.57
7659429--7659477	14	3.6	14	76	17	50	59	2	0	38	1.09
7659421--7659481	26	2.4	25	80	19	74	59	1	0	39	1.08
7660342--7660422	42	1.9	42	85	9	112	29	18	19	32	1.96
7660546--7660622	32	2.4	32	86	0	109	3	25	31	38	1.74
7663601--7663632	8	3.9	8	92	8	55	46	0	0	53	1.00
7663601--7663632	17	1.9	16	93	6	55	46	0	0	53	1.00
7664747--7664782	18	2.1	17	89	5	54	50	0	0	50	1.00
7677059--7677122	13	4.5	13	75	17	65	32	0	1	65	1.02
7677076--7677131	18	3.2	18	73	14	53	37	0	1	60	1.07
7677057--7677131	35	2.2	34	85	7	98	37	0	1	61	1.05
7677681--7677716	15	2.5	15	90	4	56	69	8	0	22	1.15
7679157--7679259	54	1.9	54	85	0	143	35	13	6	43	1.71
7679344--7679501	84	1.9	84	80	7	187	40	19	5	34	1.74
7685317--7685352	18	2.1	17	89	5	54	50	0	0	50	1.00
7685408--7685440	17	2.0	17	88	5	50	39	0	15	45	1.46
7686445--7686478	14	2.4	14	90	9	52	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7686464--7686495	17	1.9	16	93	6	55	53	0	0	46	1.00
7686464--7686495	8	3.9	8	92	8	55	53	0	0	46	1.00
7687843--7687879	14	2.6	14	95	4	65	16	0	0	83	0.64
7688040--7688084	23	2.0	23	86	4	65	42	15	20	22	1.89
7688948--7688974	13	2.1	13	100	0	54	22	0	0	77	0.76
7688944--7688987	20	2.2	20	88	8	63	25	0	0	75	0.81
7689288--7689334	18	2.7	18	80	9	53	63	0	4	31	1.13
7689593--7689959	193	1.9	193	93	1	628	37	10	14	37	1.81
7690433--7690492	19	3.1	19	74	11	52	83	10	3	3	0.88
7690423--7690493	25	2.8	25	82	4	79	80	11	4	4	1.00
7697751--7697785	14	2.4	14	90	4	52	0	31	0	68	0.90
7699789--7699823	12	2.9	12	86	0	52	17	20	34	28	1.95
7704627--7704679	24	2.2	24	83	6	72	9	32	11	47	1.71
7706095--7706222	37	3.5	37	78	8	134	35	20	14	29	1.93
7706747--7706789	11	3.9	11	84	6	52	9	0	6	83	0.80
7720114--7720313	98	2.0	98	90	1	312	31	24	22	22	1.98
7721984--7722021	20	2.0	20	89	5	60	15	5	0	78	0.91
7722635--7722672	13	2.9	13	84	7	51	50	0	0	50	1.00
7725125--7725159	17	2.1	17	89	5	54	51	2	2	42	1.31
7726785--7726830	11	4.2	11	82	0	56	58	2	0	39	1.10
7726776--7726830	22	2.5	22	87	0	74	56	3	1	38	1.28
7726890--7727157	22	12.4	22	66	12	99	49	5	9	35	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7726959--7727059	42	2.4	42	83	5	123	48	8	5	36	1.59
7727779--7727825	20	2.4	20	89	3	69	51	12	4	31	1.59
7727844--7727917	12	5.8	13	75	17	59	54	9	1	35	1.42
7729534--7729567	18	1.9	18	88	5	52	64	5	2	26	1.30
7731715--7731754	21	1.9	21	84	0	53	62	7	5	25	1.42
7733578--7733667	37	2.5	37	87	1	119	36	14	15	33	1.88
7733911--7733976	22	3.0	22	88	4	89	30	12	22	34	1.91
7734611--7734649	10	3.5	11	82	10	53	2	0	10	87	0.65
7739435--7739837	143	2.8	143	78	6	415	34	11	11	42	1.77
7753988--7754030	18	2.3	18	88	4	59	86	11	0	2	0.67
7753988--7754030	17	2.6	16	85	14	52	86	11	0	2	0.67
7754184--7754232	11	4.5	11	80	7	55	85	6	0	8	0.73
7754746--7754933	37	5.1	36	73	11	132	29	14	22	33	1.94
7755376--7755419	16	2.7	16	78	3	52	25	2	13	59	1.46
7755405--7755738	139	2.3	143	82	5	365	33	11	9	45	1.74
7756292--7756342	24	2.1	25	81	3	59	49	9	33	7	1.65
7758920--7758945	9	2.9	9	100	0	52	57	11	23	7	1.59
7761228--7761288	3	20.3	3	86	0	50	65	11	1	21	1.33
7763176--7763227	20	2.5	21	79	14	56	71	1	25	1	1.07
7767198--7767236	12	3.1	12	85	10	51	38	25	2	33	1.70
7767560--7767594	18	1.9	18	88	0	52	71	5	2	20	1.19
7767880--7767920	12	3.4	12	83	12	57	21	12	24	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7776085--7776164	38	2.2	36	86	6	108	33	1	12	52	1.47
7776197--7776221	13	1.9	13	100	0	50	52	8	8	32	1.60
7776228--7776366	19	7.3	19	68	18	69	53	10	4	31	1.53
7776416--7776458	17	2.5	17	85	11	52	79	0	4	16	0.90
7776419--7776478	23	2.6	22	73	17	59	78	1	5	15	1.00
7777976--7778019	18	2.4	18	85	7	54	54	2	2	40	1.25
7778015--7778083	22	3.1	22	79	8	68	56	4	4	34	1.39
7778095--7778172	11	7.1	11	69	16	54	47	1	5	46	1.33
7778514--7778574	9	6.6	9	72	12	52	59	0	3	37	1.14
7778512--7778542	10	3.0	10	90	9	53	61	0	0	38	0.96
7778693--7778760	27	2.5	27	85	4	93	70	4	4	20	1.22
7778821--7778869	21	2.4	21	86	10	66	55	12	0	32	1.37
7779101--7779145	18	2.5	18	85	0	54	48	2	2	46	1.26
7779362--7779432	10	6.6	11	76	9	51	40	2	2	53	1.30
7779539--7779582	16	2.6	18	78	10	56	54	0	4	40	1.21
7779584--7779636	21	2.5	20	81	6	61	24	1	7	66	1.28
7779614--7779691	29	2.7	28	80	6	84	37	1	10	51	1.44
7779720--7779777	20	2.9	20	87	5	73	41	0	3	55	1.17
7779621--7779774	10	15.7	10	67	15	63	40	0	7	51	1.36
7780298--7780666	22	16.7	22	66	13	105	48	5	9	36	1.59
7780345--7780413	11	6.3	11	74	0	66	53	2	4	39	1.36
7780552--7780665	43	2.6	44	80	8	133	46	6	10	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7780705--7780752	22	2.2	22	85	7	62	56	10	4	29	1.52
7780879--7780928	22	2.3	21	76	10	55	52	2	4	42	1.31
7781361--7781579	114	1.9	113	83	0	285	32	9	6	51	1.61
7781361--7781600	55	4.3	58	76	11	207	32	9	7	51	1.60
7783503--7783551	17	2.8	17	81	3	62	44	10	8	36	1.68
7783652--7783697	18	2.6	17	86	3	56	45	8	13	32	1.73
7783538--7783710	88	2.0	88	83	2	222	37	8	13	40	1.75
7783705--7783758	18	3.0	18	80	0	63	50	11	11	27	1.72
7783931--7784065	24	5.7	24	79	8	116	45	12	5	36	1.67
7783987--7784092	45	2.3	46	83	1	124	48	16	4	30	1.67
7784959--7785153	103	1.9	103	84	2	266	35	8	10	45	1.69
7785312--7785370	19	3.1	19	75	18	68	49	13	6	30	1.68
7786527--7786582	22	2.6	21	78	13	53	12	14	3	69	1.31
7786526--7786598	23	3.3	21	74	11	65	10	16	2	69	1.28
7787701--7787814	42	2.6	45	80	6	117	43	14	7	34	1.73
7791111--7791198	43	2.0	43	100	0	176	28	11	18	42	1.85
7792565--7792760	102	1.9	102	83	7	245	34	10	12	42	1.77
7792963--7793021	17	3.3	19	81	15	63	50	11	3	33	1.56
7793067--7793131	3	21.7	3	96	0	121	67	1	0	30	1.00
7794239--7794277	20	1.9	21	89	5	62	7	15	2	74	1.15
7794225--7794296	34	2.1	35	86	5	101	11	15	2	70	1.26
7794324--7794372	25	1.9	25	84	12	64	65	12	0	22	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7795293--7795323	15	2.1	15	93	0	53	0	16	0	83	0.64
7800094--7800151	26	2.2	27	81	6	66	12	15	8	63	1.50
7800571--7800611	9	4.4	10	82	14	52	75	0	0	24	0.80
7800827--7801259	49	8.6	48	76	10	318	36	21	12	29	1.90
7800827--7801203	49	7.6	50	79	7	385	35	22	12	29	1.91
7800827--7801268	200	2.2	198	83	6	532	35	21	12	30	1.90
7801146--7801259	57	2.0	58	93	5	196	35	21	10	31	1.88
7813636--7813697	23	2.7	23	78	7	65	75	3	17	3	1.07
7813709--7813743	3	11.7	3	100	0	70	68	0	0	31	0.90
7817153--7817435	58	5.0	56	76	9	227	34	8	6	51	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106