genome.fa.s57.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  37  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6930989--6931017	14	2.0	15	93	6	51	41	0	0	58	0.98
6930980--6931023	18	2.4	18	77	7	54	50	0	0	50	1.00
6930971--6931064	40	2.4	40	82	8	104	46	2	2	48	1.25
6931473--6931520	25	2.0	23	84	11	62	50	0	4	45	1.21
6932862--6932909	14	3.4	14	83	11	71	47	37	0	14	1.44
6932862--6932917	28	2.0	28	100	0	112	46	39	0	14	1.44
6932870--6932920	14	3.7	14	82	12	70	49	37	0	13	1.43
6948300--6948772	104	4.5	103	73	7	328	17	20	12	49	1.78
6948452--6948636	35	5.3	35	71	11	121	16	21	12	48	1.80
6948524--6948674	70	2.2	69	82	9	191	19	21	10	48	1.79
6949013--6949100	1	88.0	1	70	0	59	85	11	0	3	0.72
6949023--6949091	5	13.8	5	83	8	79	84	14	0	1	0.70
6949016--6949092	35	2.1	36	90	4	120	84	12	0	2	0.73
6949023--6949100	40	2.0	39	87	7	113	84	12	0	2	0.72
6949013--6949094	10	8.3	10	78	6	87	85	12	0	2	0.70
6952564--6952742	90	2.0	90	92	0	295	35	18	16	30	1.93
6952983--6953015	3	11.0	3	93	0	57	66	3	0	30	1.06
6955017--6955072	14	4.1	13	75	18	51	19	1	1	76	0.96
6957261--6957326	30	2.2	30	86	8	89	75	0	16	7	1.02
6957274--6957317	17	2.4	18	85	11	63	72	0	18	9	1.10
6957271--6957325	13	3.9	14	76	17	51	72	0	18	9	1.10
6957352--6957607	25	10.2	25	81	5	284	30	10	9	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6957351--6957607	76	3.4	76	85	4	308	31	10	9	48	1.70
6957352--6957607	51	5.1	51	86	2	295	30	10	9	48	1.70
6959772--6960209	219	2.0	219	98	0	840	29	10	25	34	1.89
6964277--6964315	14	2.8	14	80	0	51	84	2	12	0	0.72
6964758--6964823	18	3.4	19	71	24	57	69	0	19	10	1.17
6964779--6964844	22	3.1	22	82	12	84	72	0	18	9	1.10
6964758--6964873	38	3.1	37	81	8	121	72	0	17	10	1.11
6964775--6964881	18	6.1	18	75	19	84	72	0	16	10	1.10
6964758--6964877	20	6.0	21	71	19	78	72	0	17	10	1.11
6964829--6964873	15	2.9	16	80	6	56	77	0	13	8	0.98
6965216--6965246	12	2.6	12	94	0	53	90	0	9	0	0.46
6965216--6965246	15	2.1	14	94	5	53	90	0	9	0	0.46
6967111--6967224	30	3.8	30	80	2	120	37	15	20	26	1.92
6967106--6967224	61	2.0	61	86	0	166	37	15	20	26	1.92
6967111--6967252	61	2.3	60	80	4	151	38	16	19	26	1.92
6967320--6967386	31	2.2	31	86	2	91	50	11	14	22	1.76
6971846--6971870	12	2.1	12	100	0	50	24	24	0	52	1.48
6971859--6972189	127	2.8	115	76	14	346	47	7	11	34	1.68
6972027--6972175	61	2.5	61	82	5	169	46	6	11	34	1.66
6976094--6976169	13	5.8	13	72	18	59	78	0	18	2	0.86
6976099--6976162	31	2.1	31	91	2	103	81	0	17	1	0.77
6976115--6976222	17	6.3	17	68	22	57	74	0	18	6	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6976134--6976200	24	2.8	25	79	18	72	73	1	17	7	1.14
6976094--6976222	7	17.3	7	74	18	57	75	0	18	5	1.04
6977540--6977636	17	5.8	16	72	9	59	26	14	15	43	1.85
6977540--6977634	34	2.8	34	83	3	111	27	14	15	42	1.86
6977868--6978651	86	9.3	86	78	6	714	22	21	14	41	1.88
6977868--6978719	171	5.1	165	77	7	722	22	20	13	42	1.88
6977861--6978642	337	2.3	338	86	4	1114	23	21	13	41	1.88
6980805--6981300	60	8.0	60	76	14	436	49	6	9	34	1.62
6980909--6980933	12	2.1	12	100	0	50	24	16	0	60	1.36
6980848--6981054	58	3.1	71	80	15	246	47	7	8	35	1.63
6981027--6981165	69	2.1	69	86	5	196	48	6	11	33	1.65
6984325--6984370	3	15.3	3	100	0	92	67	0	0	32	0.91
6984369--6984419	3	17.0	3	100	0	102	33	0	0	66	0.92
6984993--6985037	19	2.5	18	82	10	56	60	0	0	40	0.97
6984999--6985041	19	2.3	19	92	4	70	65	0	0	34	0.93
6985344--6985392	1	49.0	1	83	0	53	0	6	4	89	0.57
6985344--6985393	26	1.9	26	87	0	73	0	6	6	88	0.65
6985344--6985392	15	3.3	15	83	8	64	0	6	4	89	0.57
6989441--6989655	103	2.1	101	81	6	247	35	12	13	38	1.82
6989661--6989728	22	3.1	22	80	0	82	36	5	16	41	1.72
7001543--7001587	22	2.0	22	82	4	54	82	0	13	4	0.82
7002815--7002947	68	2.0	68	92	0	221	42	3	11	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7009649--7009677	13	2.1	14	93	6	51	37	0	0	62	0.96
7009734--7009791	22	2.9	20	75	10	57	51	1	1	44	1.21
7014990--7015014	1	25.0	1	100	0	50	100	0	0	0	0.00
7018828--7018886	31	1.9	31	96	0	109	45	8	13	32	1.74
7019033--7019081	24	2.0	25	84	4	64	36	6	12	44	1.67
7018780--7019517	248	3.0	247	84	3	932	39	7	10	42	1.69
7019321--7019380	30	2.0	30	83	6	77	43	6	13	36	1.70
7024579--7024617	13	3.1	13	85	3	53	28	0	10	61	1.28
7030886--7030934	24	2.0	25	84	4	64	36	6	12	44	1.67
7030634--7031274	247	2.6	247	85	6	838	38	7	11	42	1.68
7031172--7031231	30	2.0	30	83	6	77	43	6	13	36	1.70
7030676--7031370	247	2.8	248	81	6	783	39	8	11	41	1.70
7036432--7036470	13	3.1	13	85	3	53	28	0	10	61	1.28
7036493--7036547	19	3.0	19	87	10	71	32	1	3	61	1.24
7040063--7040197	71	1.9	71	80	3	155	26	13	18	41	1.87
7040257--7040294	12	3.1	13	77	14	53	23	18	18	39	1.92
7043814--7043841	2	14.0	2	100	0	56	50	0	0	50	1.00
7044137--7044191	27	2.0	27	85	0	74	30	16	9	43	1.79
7044130--7044176	18	2.6	18	86	0	67	31	17	6	44	1.73
7044095--7044256	80	2.0	80	83	2	200	29	13	9	47	1.74
7044164--7044274	18	6.2	17	68	12	62	29	14	9	46	1.75
7044170--7044286	36	3.3	34	78	8	94	32	13	9	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7044147--7044256	27	4.1	27	69	11	64	29	14	9	47	1.75
7044206--7044289	36	2.3	36	83	0	96	34	15	5	44	1.71
7044312--7044449	36	3.8	36	75	3	116	29	10	10	49	1.71
7044405--7044458	28	1.9	28	82	14	67	27	9	12	50	1.71
7044384--7044490	54	2.0	54	83	7	137	28	10	11	50	1.70
7044312--7044450	72	1.9	72	82	0	170	29	10	10	48	1.72
7044456--7044528	19	3.9	19	75	5	69	35	13	5	45	1.67
7044501--7044554	18	2.9	18	75	5	54	27	16	12	42	1.85
7060251--7060297	19	2.5	18	86	3	58	17	4	27	51	1.64
7060336--7060383	13	3.6	13	83	5	60	16	6	25	52	1.67
7060346--7060375	14	2.1	14	93	0	51	16	6	16	60	1.56
7060471--7060603	3	44.0	3	74	12	60	24	3	4	67	1.23
7060516--7060605	32	2.8	33	81	11	89	26	4	0	68	1.08
7060913--7060951	16	2.4	16	87	8	53	17	0	5	76	0.96
7062482--7062518	13	2.8	13	87	0	56	8	10	8	72	1.27
7064068--7064112	4	12.0	4	86	13	69	77	0	0	22	0.76
7064068--7064108	19	2.2	18	95	4	73	78	0	0	21	0.76
7068728--7068768	18	2.3	18	95	0	73	34	14	7	43	1.73
7071499--7071524	2	13.0	2	100	0	52	50	0	0	50	1.00
7071618--7071657	15	2.5	15	88	8	53	27	0	5	67	1.11
7071631--7071659	15	1.9	15	100	0	58	31	0	0	68	0.89
7074046--7074093	25	1.9	25	83	8	62	77	2	8	12	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7074954--7074984	3	10.3	3	100	0	62	67	0	0	32	0.91
7077664--7077709	21	2.2	21	84	7	58	56	13	0	30	1.37
7080549--7080602	18	3.1	18	79	15	60	16	0	12	70	1.17
7080533--7080632	22	4.7	21	78	10	87	17	0	9	74	1.07
7080549--7080631	44	1.9	43	82	7	105	16	0	9	73	1.08
7080578--7080645	28	2.4	28	83	9	77	16	1	5	76	1.05
7080535--7080632	44	2.2	44	78	12	103	16	0	9	74	1.06
7080583--7080640	14	4.5	13	77	16	50	15	1	3	79	0.95
7081071--7081115	16	2.8	16	86	0	63	22	28	28	20	1.98
7081146--7081244	23	4.3	23	72	2	83	31	17	20	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106