genome.fa.s57.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  35  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6537036--6537091	26	2.2	26	83	0	67	66	1	3	28	1.19
6537051--6537204	21	7.3	20	79	10	123	55	3	5	36	1.39
6537048--6537207	8	19.1	8	67	22	73	55	3	5	36	1.37
6537052--6537204	26	5.8	27	73	15	79	54	3	5	36	1.39
6537782--6537839	28	2.0	29	96	3	109	32	27	10	29	1.90
6544120--6544167	23	2.1	23	88	3	71	18	8	18	54	1.68
6546568--6546643	37	2.0	37	82	7	91	42	5	2	50	1.39
6549322--6549744	103	4.1	101	78	10	353	43	8	9	38	1.68
6551673--6551721	24	2.0	24	88	0	71	42	0	0	57	0.99
6553704--6553762	25	2.5	23	76	12	66	32	1	18	47	1.59
6558423--6558455	2	16.5	2	100	0	66	51	0	0	48	1.00
6565045--6565093	24	2.0	25	84	7	66	4	8	4	83	0.89
6565811--6565875	20	3.1	22	67	22	59	46	9	10	33	1.71
6565929--6566022	40	2.3	40	85	3	118	42	7	14	35	1.74
6566364--6566416	26	2.0	26	82	7	63	24	1	5	67	1.22
6567071--6567166	20	4.5	21	71	13	70	31	4	9	55	1.51
6567071--6567174	21	4.9	21	71	12	86	31	4	9	53	1.54
6567134--6567180	20	2.3	20	79	13	60	34	4	6	55	1.45
6567123--6567380	55	4.6	55	84	3	304	30	6	10	52	1.61
6567346--6567412	32	2.1	32	86	5	91	26	4	11	56	1.54
6567402--6567465	20	3.7	20	66	33	65	32	6	10	50	1.63
6567510--6567556	24	1.9	25	83	12	62	29	4	6	59	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6567671--6567744	18	4.0	19	75	18	75	35	4	10	50	1.56
6567639--6567738	38	2.7	36	79	14	98	37	5	8	50	1.54
6578855--6578886	12	2.8	12	90	9	50	21	9	31	37	1.85
6580551--6580603	22	2.5	21	84	3	61	45	5	7	41	1.56
6584032--6584102	22	3.2	22	82	4	81	38	5	9	46	1.61
6584683--6585016	22	15.3	22	72	7	108	37	11	5	45	1.63
6584880--6584983	43	2.4	44	81	3	111	37	13	2	46	1.58
6584906--6585109	44	4.7	44	77	12	163	36	11	4	46	1.62
6585428--6586104	22	31.3	22	71	8	287	37	9	5	46	1.61
6585730--6585933	43	4.7	44	71	10	132	37	10	4	48	1.58
6586064--6586124	22	2.8	22	87	0	86	36	6	4	52	1.49
6586064--6586180	44	2.7	43	75	8	123	37	10	4	47	1.57
6586066--6586126	11	5.5	11	73	7	52	36	6	4	52	1.49
6586196--6586271	22	3.4	22	75	1	71	34	5	6	53	1.49
6586178--6586265	44	2.0	44	84	0	113	34	7	6	51	1.58
6586196--6586265	11	6.4	11	69	0	50	32	4	7	55	1.46
6586196--6586281	44	2.0	44	81	4	102	33	5	6	53	1.52
6586255--6586311	22	2.6	22	88	0	78	38	10	5	45	1.61
6586380--6586439	24	2.3	26	75	11	61	36	8	5	50	1.55
6589843--6589891	14	3.8	14	69	20	52	30	14	4	51	1.61
6591314--6591358	24	2.0	23	86	8	65	48	0	2	48	1.13
6591313--6591364	24	2.2	24	79	3	61	50	0	1	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6593007--6593067	30	2.0	30	96	0	113	36	13	8	42	1.74
6593013--6593065	15	3.5	15	72	10	54	35	11	7	45	1.69
6594815--6594850	12	2.7	14	83	16	58	50	5	27	16	1.68
6595622--6595657	10	3.6	10	84	0	54	44	2	5	47	1.41
6595615--6595663	20	2.5	20	100	0	98	46	6	4	42	1.47
6600044--6600070	2	13.5	2	100	0	54	51	0	0	48	1.00
6602016--6602072	24	2.3	24	85	8	80	49	3	0	47	1.18
6602651--6602961	145	2.1	144	85	4	412	31	12	12	42	1.81
6611992--6612079	27	3.3	26	77	13	90	77	7	4	10	1.12
6612027--6612077	18	2.9	18	79	2	59	78	9	1	9	1.04
6612028--6612066	12	3.3	12	85	3	53	76	7	2	12	1.09
6612003--6612061	31	1.9	31	83	13	77	74	6	3	15	1.16
6612027--6612077	12	4.2	12	80	7	50	78	9	1	9	1.04
6612434--6612463	9	3.3	9	90	0	51	86	3	10	0	0.67
6612392--6612866	130	3.6	131	80	8	491	56	8	16	18	1.65
6614253--6614333	42	2.0	41	90	2	126	37	27	7	28	1.84
6614816--6614848	2	16.5	2	100	0	66	51	0	48	0	1.00
6615046--6615324	105	2.6	105	84	5	375	35	13	13	37	1.84
6615027--6615324	106	2.8	106	84	5	374	35	13	12	37	1.83
6615355--6615481	62	2.0	62	87	3	184	27	11	18	42	1.84
6615569--6615642	7	10.4	7	76	13	55	82	12	2	2	0.88
6615576--6615667	6	16.3	6	79	10	81	79	15	3	2	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6615560--6615653	45	2.1	45	90	6	145	81	11	3	3	0.92
6615586--6615663	5	14.4	5	80	10	66	79	14	3	2	0.98
6615576--6615667	16	5.5	16	79	15	82	79	15	3	2	0.96
6615560--6615667	45	2.4	45	85	4	137	80	12	2	3	0.95
6615669--6615754	37	2.3	37	83	0	109	29	20	16	33	1.95
6615694--6615791	37	2.6	38	84	7	121	28	17	14	39	1.88
6615831--6615941	58	1.9	58	88	3	170	44	11	16	27	1.82
6616318--6616361	21	2.0	22	86	8	63	52	15	6	25	1.68
6618540--6618569	15	1.9	16	93	6	53	36	3	20	40	1.69
6620351--6620390	18	2.2	19	86	4	55	45	0	2	52	1.14
6626638--6626695	30	1.9	30	92	0	98	43	3	24	29	1.70
6629291--6629317	2	13.5	2	100	0	54	48	0	0	51	1.00
6629589--6629634	25	1.9	25	86	8	69	60	6	0	32	1.22
6629913--6629979	25	2.7	26	84	9	77	53	19	7	19	1.68
6629938--6629990	13	4.2	13	78	4	63	52	18	7	20	1.69
6629927--6630000	26	2.9	26	80	6	80	51	18	9	20	1.74
6629989--6630069	19	4.3	18	73	9	54	38	17	16	28	1.91
6630235--6630273	19	2.0	20	95	5	71	66	5	0	28	1.12
6642739--6642893	59	2.6	58	79	5	168	56	21	1	20	1.49
6642915--6642947	12	3.0	11	87	12	50	72	9	0	18	1.10
6647367--6647407	17	2.5	16	84	7	55	21	7	4	65	1.37
6648091--6648126	12	2.9	12	91	4	54	19	5	0	75	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6648438--6648468	3	10.7	3	93	6	55	67	0	0	32	0.91
6653783--6653816	15	2.3	15	94	0	59	85	0	14	0	0.60
6655743--6655898	84	1.9	84	83	2	206	32	16	14	37	1.88
6656249--6656281	16	2.1	16	88	11	50	21	0	6	72	1.05
6658395--6658423	12	2.4	12	100	0	58	31	17	24	27	1.97
6667770--6668076	7	47.3	6	68	19	90	46	34	0	17	1.55
6667770--6668076	13	23.7	12	66	20	90	46	34	0	17	1.55
6667770--6668039	20	13.4	20	70	17	116	47	34	0	17	1.51
6667766--6668044	13	21.3	13	68	20	120	48	34	0	16	1.50
6667895--6668076	20	8.9	20	72	15	122	46	37	1	14	1.55
6669190--6669332	49	2.9	48	78	15	155	43	4	11	39	1.63
6688026--6688127	53	1.9	53	87	0	150	36	12	14	36	1.85
6688129--6688175	23	2.1	22	84	4	58	29	8	17	44	1.78
6691669--6691733	17	4.2	16	74	14	57	7	4	7	80	1.03
6691719--6691767	25	2.1	23	88	11	73	10	0	8	81	0.87
6691669--6691768	41	2.4	42	82	14	118	10	3	9	78	1.08
6691669--6691768	40	2.4	43	82	14	120	10	3	9	78	1.08
6691696--6691794	20	4.9	20	79	8	76	18	1	7	73	1.11
6691713--6691778	33	2.1	31	85	5	87	13	0	7	78	0.94
6691925--6691972	22	2.2	22	88	0	69	31	16	20	31	1.95
6692112--6692222	53	2.1	53	87	0	159	44	15	11	28	1.82
6692549--6692626	22	3.5	22	80	1	93	24	20	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6692686--6692746	23	2.7	23	89	0	86	36	9	22	31	1.87
6692801--6692863	21	2.9	22	76	6	67	26	23	23	25	2.00
6693116--6693195	23	3.5	23	77	14	69	1	18	3	76	1.01
6693154--6693192	16	2.4	17	86	4	53	0	12	2	84	0.72
6693115--6693190	32	2.4	32	82	2	91	1	18	3	76	1.01
6694716--6694992	146	1.9	141	83	8	353	21	14	10	53	1.70
6694886--6695333	123	3.6	120	82	6	486	22	16	8	52	1.71
6696124--6696164	20	2.0	20	100	0	82	41	14	19	24	1.89
6700646--6700710	24	2.7	24	79	11	78	41	3	3	52	1.32
6700646--6700722	26	3.1	24	80	16	77	45	2	2	49	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106