genome.fa.s57.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  23  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4097541--4097592	6	8.7	6	83	12	63	78	1	0	19	0.84
4097542--4097592	23	2.2	24	86	10	70	78	1	0	19	0.85
4097539--4097592	28	1.9	28	92	7	92	79	1	0	18	0.82
4097793--4098223	41	10.6	41	83	6	522	36	22	16	24	1.95
4097793--4098223	83	5.3	82	85	4	529	36	22	16	24	1.95
4097820--4098223	124	3.3	121	86	4	536	35	23	17	24	1.95
4098145--4098208	32	2.0	32	96	0	119	31	29	18	20	1.96
4104988--4105040	26	2.0	26	85	7	70	49	13	9	28	1.73
4105408--4105668	40	6.5	40	80	4	204	34	12	13	39	1.82
4105873--4105909	19	2.0	20	84	10	51	67	2	10	18	1.32
4106163--4106247	35	2.4	35	88	3	118	32	21	18	27	1.97
4106353--4106401	25	2.0	25	84	8	64	71	6	10	12	1.30
4106535--4106589	23	2.3	23	81	9	67	52	0	21	25	1.47
4107128--4107190	32	2.0	32	93	0	108	41	11	7	39	1.70
4107090--4107235	78	1.9	77	82	4	186	35	14	10	39	1.81
4107168--4107332	45	3.6	45	82	0	213	32	9	12	46	1.73
4107684--4107724	20	2.0	21	86	13	59	73	0	24	2	0.96
4108204--4108249	21	2.2	21	88	0	65	36	4	13	45	1.63
4108608--4108643	16	2.2	16	90	0	54	16	13	11	58	1.63
4108758--4108804	3	15.7	3	100	0	94	65	0	0	34	0.93
4108803--4108837	3	11.7	3	100	0	70	34	0	0	65	0.93
4110522--4110547	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4115026--4115055	15	1.9	16	93	6	53	10	10	0	80	0.92
4116728--4116840	53	2.1	53	85	3	156	30	16	13	39	1.87
4122346--4122380	16	2.2	16	94	0	61	37	5	14	42	1.69
4122347--4122617	88	3.1	88	84	2	330	43	7	6	42	1.58
4122572--4122671	44	2.2	44	94	3	173	44	11	6	39	1.64
4124526--4125054	60	8.8	58	79	12	543	36	10	6	45	1.67
4124531--4125051	117	4.3	117	83	10	547	36	11	6	45	1.66
4125069--4125149	5	15.8	5	74	23	71	77	2	4	14	1.04
4125069--4125142	22	3.4	23	76	14	68	78	2	4	14	1.01
4125099--4125150	16	3.3	15	82	12	61	78	1	5	13	1.01
4125175--4125214	16	2.7	15	88	11	64	80	7	0	12	0.91
4126092--4126124	17	1.9	17	88	11	50	72	0	3	24	0.98
4126090--4126302	11	19.8	11	66	20	71	66	3	3	26	1.22
4126157--4126206	19	2.6	21	81	15	63	64	2	2	32	1.16
4126114--4126291	81	2.3	77	76	15	177	65	3	3	27	1.24
4126132--4126243	50	2.3	49	77	10	113	67	3	2	25	1.20
4126272--4126363	23	4.0	22	73	13	80	73	3	3	19	1.10
4126319--4126363	17	2.6	16	82	10	54	77	2	0	20	0.87
4126542--4127002	41	11.1	41	89	2	627	36	22	17	23	1.95
4126542--4127002	124	3.7	123	87	2	620	36	22	17	23	1.95
4126543--4127002	165	2.8	164	90	2	688	36	23	17	23	1.95
4134386--4134424	20	2.0	20	84	0	51	82	0	0	17	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4134793--4135124	165	2.0	166	95	1	596	29	14	14	41	1.86
4146832--4147263	215	2.0	215	88	1	634	34	14	15	35	1.88
4147551--4147598	12	4.2	12	78	10	55	64	6	2	27	1.28
4147589--4147636	22	2.1	23	88	3	71	52	12	8	27	1.67
4147589--4147655	23	3.0	22	82	6	73	56	11	7	23	1.60
4147775--4147805	8	3.9	8	91	0	53	74	0	3	22	0.96
4148725--4148750	3	8.7	3	100	0	52	65	0	0	34	0.93
4150236--4150277	20	2.0	21	90	4	68	9	21	0	69	1.17
4154697--4155677	369	2.7	364	80	5	1027	29	20	26	22	1.99
4156824--4157141	145	2.2	141	78	7	329	35	13	13	37	1.84
4158238--4158307	18	3.7	19	76	10	56	48	27	2	21	1.64
4158347--4158380	18	1.9	18	88	5	52	38	44	2	14	1.61
4163143--4163283	73	1.9	73	81	5	169	37	12	19	31	1.88
4178902--4179138	62	3.8	62	73	12	200	36	11	13	38	1.80
4178907--4179147	125	1.9	123	84	5	315	34	10	13	40	1.80
4178904--4179169	62	4.3	61	74	10	191	36	11	12	39	1.80
4179065--4179207	62	2.3	63	83	4	166	34	11	11	42	1.76
4185119--4185980	160	5.4	157	77	6	640	32	10	14	42	1.80
4185243--4185980	320	2.3	320	79	5	763	33	10	14	42	1.79
4189022--4189120	35	2.8	35	69	14	85	34	2	5	58	1.31
4192424--4192454	16	2.0	15	93	6	53	64	9	6	19	1.45
4193501--4193538	18	2.1	18	90	0	58	23	21	15	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4194244--4194294	16	3.4	15	81	7	59	84	5	3	5	0.87
4197056--4197108	20	2.8	20	73	21	60	58	0	0	41	0.98
4207592--4207673	42	2.0	42	80	4	94	48	8	9	32	1.66
4212943--4212997	26	2.2	26	83	3	67	40	5	7	47	1.54
4213521--4213625	24	4.5	24	72	14	76	41	6	1	49	1.40
4213521--4213564	22	1.9	22	86	9	61	40	6	2	50	1.42
4213530--4213578	23	2.1	23	81	7	55	46	6	0	46	1.27
4217750--4217784	4	8.8	4	100	0	70	25	0	22	51	1.48
4219106--4219153	22	2.2	21	85	3	60	66	6	0	27	1.15
4220334--4220365	16	1.9	17	93	6	57	59	3	0	37	1.13
4224455--4224498	20	2.1	21	87	4	63	59	15	4	20	1.54
4238875--4239364	244	2.0	244	95	0	881	36	16	8	38	1.79
4239579--4239770	103	1.9	103	92	0	321	26	11	19	42	1.85
4240538--4240583	20	2.5	17	80	16	56	60	2	19	17	1.46
4240545--4240583	20	2.0	20	100	0	78	61	0	23	15	1.33
4248942--4248982	19	2.1	20	86	4	57	73	2	2	21	1.07
4257796--4258793	499	2.0	499	93	0	1717	37	14	17	29	1.90
4260026--4260096	33	2.2	33	84	5	90	25	15	19	39	1.91
4260333--4260701	43	8.6	43	80	5	370	26	15	15	43	1.86
4260333--4260701	128	2.9	128	82	5	415	26	15	15	43	1.86
4279319--4279354	15	2.4	15	90	0	54	27	8	8	55	1.58
4280661--4280735	34	2.2	34	86	6	100	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4280895--4280942	18	2.7	18	83	0	60	2	20	0	77	0.88
4283022--4283060	19	2.1	19	95	0	69	56	10	10	23	1.63
4284220--4284308	30	3.0	30	70	9	83	41	4	19	34	1.71
4286559--4286607	15	3.3	15	77	2	55	36	0	2	61	1.08
4286671--4286734	28	2.4	26	75	12	67	54	0	0	45	0.99
4288089--4288544	239	1.9	237	86	2	655	33	11	12	41	1.80
4293612--4293719	54	2.0	53	90	1	171	30	14	4	50	1.64
4302667--4302707	3	13.7	3	100	0	82	31	0	0	68	0.90
4305200--4305246	15	3.1	15	82	11	53	23	0	10	65	1.23
4305660--4305780	61	2.0	62	83	1	154	27	6	12	53	1.63
4307176--4307218	15	2.9	15	80	13	52	51	0	6	41	1.29
4312483--4312636	34	4.5	33	71	13	89	43	9	12	33	1.76
4315670--4315709	17	2.3	18	83	16	57	20	2	12	65	1.38
4317274--4317380	50	2.1	50	87	3	153	51	19	1	27	1.57
4319925--4319957	17	2.1	16	88	11	50	51	0	0	48	1.00
4320786--4320815	9	3.3	9	100	0	60	66	0	10	23	1.21
4321675--4321748	26	3.0	26	84	9	84	74	0	18	6	1.04
4321693--4321725	17	1.9	17	93	0	57	75	0	18	6	1.00
4325419--4325461	21	2.1	21	86	4	61	6	9	4	79	1.06
4326379--4326431	21	2.5	21	87	6	81	28	26	24	20	1.99
4333440--4333490	15	3.4	15	86	0	75	15	13	29	41	1.86
4335503--4335552	23	2.2	23	82	7	57	12	4	4	80	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4335641--4335692	15	3.4	15	81	7	52	13	5	0	80	0.88
4338721--4338751	16	1.9	16	93	0	53	29	12	19	38	1.89
4340389--4340418	3	10.0	3	92	0	51	33	0	3	63	1.11
4340698--4340731	3	11.3	3	100	0	68	35	0	0	64	0.94
4340802--4340843	23	1.9	22	85	9	59	28	14	7	50	1.69
4341319--4341375	13	4.4	13	76	8	62	75	0	0	24	0.80
4341345--4341375	6	5.0	6	92	7	53	83	0	0	16	0.64
4342282--4342319	19	2.0	19	94	0	67	44	0	10	44	1.38
4342588--4342638	21	2.4	21	86	0	75	33	3	3	58	1.35
4344748--4344776	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106