genome.fa.s57.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  79  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15640617--15640758	61	2.3	61	87	1	196	38	15	12	33	1.85
15641596--15641628	2	16.5	2	100	0	66	51	0	0	48	1.00
15646602--15646636	11	3.0	11	84	15	52	42	5	0	51	1.25
15651719--15651765	22	2.1	22	84	7	60	42	8	8	40	1.66
15651751--15652286	60	8.7	60	74	14	348	34	11	5	49	1.62
15652000--15652037	20	1.9	20	100	0	76	21	21	5	52	1.66
15652020--15652288	57	4.6	57	80	9	319	34	9	5	50	1.57
15652249--15652350	51	2.0	50	90	1	159	34	10	3	50	1.55
15653285--15653314	7	4.3	7	95	0	51	26	3	0	70	1.03
15657994--15658018	2	12.5	2	100	0	50	52	0	0	48	1.00
15666480--15666510	12	2.6	12	94	0	53	45	6	41	6	1.55
15678935--15679111	37	4.6	37	80	12	167	21	12	16	49	1.78
15678972--15679170	81	2.4	81	94	0	344	19	12	18	49	1.78
15678891--15679111	118	1.9	118	90	0	352	21	13	17	48	1.80
15679054--15679125	37	1.9	37	85	0	99	19	11	16	52	1.73
15683540--15683575	15	2.2	17	90	9	58	83	2	8	5	0.89
15686501--15686533	12	2.7	13	90	9	52	63	0	36	0	0.95
15686805--15686837	17	1.9	17	93	0	57	12	3	3	81	0.91
15688034--15688100	30	2.2	31	78	7	75	43	0	1	55	1.09
15688072--15688123	21	2.6	21	93	6	90	50	0	0	50	1.00
15690319--15690349	14	2.2	14	94	0	53	16	0	29	54	1.42
15695735--15695792	23	2.6	23	86	5	84	65	20	3	10	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15696227--15696258	15	2.1	16	94	5	57	65	0	12	21	1.25
15697322--15697346	2	12.5	2	100	0	50	52	0	0	48	1.00
15720512--15720570	31	1.9	31	96	0	109	35	10	0	54	1.34
15720721--15720752	3	10.7	3	100	0	64	65	0	34	0	0.93
15724783--15724823	2	20.5	2	84	0	55	41	0	7	51	1.30
15724783--15724835	8	6.4	8	80	8	52	35	0	13	50	1.41
15724783--15724839	12	4.9	12	82	8	64	35	0	14	50	1.42
15729012--15729062	25	2.0	25	92	0	84	29	23	11	35	1.90
15750545--15750577	2	17.0	2	93	6	59	0	51	0	48	1.00
15758194--15758252	30	2.0	30	100	0	118	47	0	3	49	1.18
15760806--15760830	13	1.9	13	100	0	50	80	0	0	20	0.72
15763861--15763893	3	11.0	3	100	0	66	66	0	0	33	0.92
15764464--15764532	28	2.4	29	80	4	70	50	5	0	43	1.26
15770716--15770772	24	2.3	26	78	9	64	61	5	0	33	1.18
15776376--15776420	24	2.0	24	86	8	67	42	0	4	53	1.21
15798386--15798445	30	2.0	30	96	0	111	36	23	11	28	1.90
15799340--15799386	2	24.0	2	82	4	60	46	4	2	46	1.34
15807832--15807873	22	1.9	22	90	0	66	38	14	7	40	1.73
15808107--15808170	25	2.5	26	82	9	71	18	23	14	43	1.86
15812568--15812703	6	22.7	6	79	5	69	2	13	33	50	1.53
15812588--15812700	3	37.7	3	81	0	100	2	8	33	54	1.45
15812588--15812703	15	7.5	15	77	5	124	2	9	33	54	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15812734--15812814	15	5.4	15	75	5	65	4	18	35	40	1.72
15816549--15816601	26	2.1	25	89	3	79	22	3	1	71	1.12
15817117--15817148	16	2.0	16	93	0	55	53	0	0	46	1.00
15820640--15820685	24	1.9	24	86	0	65	45	13	8	32	1.73
15822141--15822184	20	2.1	21	84	12	56	47	0	4	47	1.22
15822334--15822382	16	3.1	16	82	8	55	51	0	2	46	1.12
15827449--15827491	19	2.3	18	84	4	50	55	0	0	44	0.99
15831734--15831775	22	1.9	22	85	0	57	19	19	26	35	1.95
15832636--15832670	18	1.9	18	88	0	52	5	5	5	82	0.93
15832996--15833112	50	2.3	50	85	2	155	36	22	12	28	1.91
15833129--15833167	20	2.0	20	84	0	51	56	12	5	25	1.57
15833157--15833204	24	2.0	23	88	4	69	43	18	12	25	1.85
15833150--15833797	197	3.3	197	80	3	597	41	18	13	27	1.88
15833150--15833833	296	2.3	295	86	1	967	40	18	13	27	1.88
15833150--15833832	99	6.9	99	81	2	667	40	18	13	27	1.88
15833650--15833998	165	2.1	165	83	2	423	40	18	13	26	1.88
15833761--15833895	66	2.0	66	81	0	153	42	21	11	23	1.86
15833555--15834059	264	1.9	262	85	1	688	41	18	13	26	1.87
15833815--15834065	99	2.5	98	82	1	297	42	20	12	23	1.87
15834018--15834066	23	2.1	23	81	7	55	53	24	6	16	1.66
15834078--15834191	42	2.7	42	80	0	138	42	23	11	22	1.86
15834574--15834689	35	3.3	35	86	2	162	35	12	13	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15835942--15835990	23	2.1	22	81	7	53	2	20	4	73	1.10
15837360--15837403	22	2.0	22	90	4	70	65	6	0	27	1.17
15838949--15838992	12	3.7	12	84	6	54	20	0	6	72	1.07
15839057--15839111	18	3.3	18	65	31	50	45	5	3	45	1.44
15839024--15839197	95	1.8	95	85	2	242	48	5	10	35	1.62
15839120--15839290	60	2.9	56	75	15	157	50	5	11	33	1.60
15843781--15843825	23	2.0	23	82	8	56	33	11	28	26	1.91
15844442--15844961	46	11.0	47	77	11	317	39	10	11	38	1.76
15844513--15844869	72	5.0	72	78	7	375	38	9	12	39	1.75
15844585--15844818	47	4.9	46	79	6	236	37	8	12	41	1.74
15844463--15844742	119	2.4	118	89	0	416	38	9	12	39	1.77
15844513--15844867	97	3.7	96	79	10	365	38	9	12	40	1.75
15844471--15845004	262	2.0	257	83	5	667	39	9	12	38	1.76
15844893--15845033	72	1.9	73	84	4	187	41	9	14	34	1.79
15844538--15845099	46	12.0	45	74	15	174	38	9	13	38	1.76
15845224--15845477	114	2.2	114	92	0	418	37	12	15	34	1.86
15845743--15845888	43	3.4	44	80	4	172	22	11	18	47	1.81
15846349--15846411	30	2.1	30	91	5	101	19	14	20	46	1.84
15846841--15846898	12	4.9	11	87	8	71	18	1	6	72	1.16
15846831--15846898	12	5.6	12	79	8	66	16	2	7	73	1.18
15849295--15849330	3	12.0	3	100	0	72	66	0	0	33	0.92
15853147--15853178	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15854596--15854637	2	21.5	2	95	4	77	50	0	0	50	1.00
15855588--15855827	62	3.9	62	84	7	321	32	12	7	46	1.71
15855588--15855827	123	2.0	122	86	5	342	32	12	7	46	1.71
15855838--15855881	4	10.8	4	90	4	70	77	0	2	20	0.88
15855844--15855909	12	5.5	12	82	8	73	78	1	1	18	0.90
15855832--15855909	16	4.8	16	78	13	79	76	1	3	17	1.00
15855853--15855917	17	3.6	17	80	12	60	78	1	3	16	0.96
15855837--15855916	11	6.8	11	75	20	56	77	1	3	17	0.98
15860876--15860903	10	2.8	10	100	0	56	32	0	21	46	1.52
15860905--15860930	10	2.6	10	100	0	52	30	0	11	57	1.34
15860886--15860919	16	2.1	16	88	0	50	32	0	20	47	1.51
15860870--15860929	26	2.3	26	82	0	75	35	0	16	48	1.47
15861816--15861888	37	2.0	36	81	7	85	27	21	20	30	1.98
15864141--15864213	35	2.1	36	89	2	112	26	23	12	38	1.90
15864688--15864750	32	2.0	32	84	6	83	31	31	11	25	1.91
15865250--15865322	28	2.6	28	88	0	119	27	23	15	34	1.94
15874161--15874227	28	2.4	29	82	12	86	59	0	0	40	0.97
15874179--15874248	37	1.9	35	85	5	95	55	1	0	42	1.08
15874666--15874703	17	2.2	17	86	9	51	42	0	7	50	1.31
15874763--15874801	20	2.0	20	100	0	78	53	0	0	46	1.00
15875073--15875119	24	2.0	24	83	8	60	36	0	0	63	0.94
15875110--15875159	22	2.3	22	96	0	91	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15883238--15883268	2	16.0	2	93	6	55	48	0	0	51	1.00
15884500--15884561	29	2.2	28	82	2	79	50	1	0	48	1.10
15884665--15884730	33	2.0	33	93	0	114	27	24	3	45	1.68
15887719--15887780	12	5.0	12	76	18	56	35	0	0	64	0.94
15887698--15887782	14	5.7	16	65	25	51	40	0	0	60	0.97
15887700--15887782	20	4.2	20	79	11	82	39	0	0	60	0.97
15888494--15888583	42	2.1	43	82	10	114	45	1	1	52	1.15
15888511--15888556	24	2.0	23	82	4	56	45	0	0	54	0.99
15900992--15901022	2	15.5	2	93	0	53	45	3	0	51	1.17
15906860--15906896	18	2.1	18	89	0	56	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106