genome.fa.s57.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  36  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6701915--6701960	21	2.2	20	80	3	56	73	0	0	26	0.83
6701924--6701957	11	3.0	11	83	8	50	85	0	0	14	0.60
6702285--6702317	7	4.7	7	85	14	50	45	12	0	42	1.41
6708414--6708487	27	2.8	28	77	6	82	37	1	1	59	1.14
6710589--6710970	190	2.0	190	88	2	561	25	21	16	37	1.93
6716264--6716599	172	2.0	171	86	3	471	41	18	11	29	1.85
6717593--6717618	3	8.7	3	100	0	52	69	0	0	30	0.89
6719361--6719457	34	2.8	34	84	9	126	41	11	14	32	1.81
6720417--6720480	31	2.1	31	93	0	110	42	17	10	29	1.83
6720790--6720848	31	1.9	31	92	0	100	44	11	13	30	1.80
6723118--6723197	6	13.2	6	85	2	70	67	15	0	17	1.23
6723132--6723201	3	23.0	3	79	2	68	67	10	0	22	1.20
6724275--6724308	15	2.2	16	89	5	52	73	2	20	2	1.09
6729568--6729599	6	5.5	6	92	7	57	68	0	15	15	1.21
6729568--6729604	11	3.4	11	92	7	58	70	0	16	13	1.17
6729567--6729606	17	2.4	16	80	12	53	70	0	15	15	1.18
6729976--6730026	25	2.1	24	81	3	57	86	3	3	5	0.79
6729976--6730030	19	3.2	17	82	12	51	85	3	5	5	0.83
6731075--6731322	86	2.9	85	79	7	209	29	18	14	37	1.91
6731144--6731276	69	1.9	69	84	3	178	28	19	14	37	1.91
6731140--6731287	69	2.1	69	80	4	174	29	18	14	37	1.91
6731424--6731509	18	4.9	17	83	7	91	34	19	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6731211--6731478	86	3.1	84	80	3	304	32	18	13	35	1.89
6731424--6731509	35	2.4	34	81	7	100	34	19	12	32	1.90
6732088--6732135	15	3.2	15	82	8	53	25	0	6	68	1.12
6733234--6733309	35	2.2	35	79	11	86	18	2	3	75	1.08
6733251--6733347	16	6.5	15	72	23	73	18	2	3	76	1.02
6735997--6736065	34	2.0	34	100	0	138	31	14	14	39	1.86
6741277--6741308	15	2.0	17	88	11	50	50	12	0	37	1.41
6741758--6741809	25	2.1	24	82	3	59	55	3	3	36	1.36
6741769--6741874	57	1.9	54	86	5	149	53	2	10	33	1.49
6742896--6742920	3	8.3	3	100	0	50	68	0	0	32	0.90
6747913--6747951	20	2.0	20	89	0	60	25	15	5	53	1.62
6751198--6751231	15	2.3	15	94	0	59	44	14	2	38	1.61
6752124--6752233	41	2.7	40	81	2	112	36	10	17	36	1.83
6753651--6753698	25	2.0	25	83	4	62	27	8	0	64	1.22
6754272--6754322	2	25.5	2	83	0	66	58	0	0	41	0.98
6757400--6757492	34	2.7	33	80	5	96	8	38	13	38	1.76
6758063--6758102	21	1.9	21	84	0	53	55	5	5	35	1.44
6763896--6763955	31	1.9	31	96	0	111	35	20	20	25	1.96
6772639--6772700	23	2.6	25	77	12	67	75	1	11	11	1.11
6772648--6772677	15	2.0	15	100	0	60	80	0	6	13	0.91
6773895--6773920	13	2.0	13	100	0	52	15	0	23	61	1.33
6774006--6774041	14	2.5	15	81	9	56	22	19	0	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6776257--6776304	12	3.8	12	74	15	51	22	0	25	52	1.48
6783765--6784353	292	2.0	292	97	0	1124	31	16	11	40	1.84
6786577--6786655	38	2.1	38	85	0	104	24	16	16	43	1.87
6790361--6790407	10	4.7	10	84	7	60	46	19	10	23	1.80
6800095--6800137	22	2.0	22	85	0	59	48	0	9	41	1.35
6800953--6800987	2	17.5	2	87	0	52	51	0	0	48	1.00
6801559--6801590	2	16.0	2	100	0	64	50	0	0	50	1.00
6802019--6802061	2	21.5	2	100	0	86	51	0	0	48	1.00
6802213--6802239	2	13.5	2	100	0	54	48	0	0	51	1.00
6803192--6803251	19	3.2	18	76	17	68	65	0	0	35	0.93
6803195--6803263	20	3.6	20	78	9	81	65	0	0	34	0.93
6817033--6817081	13	3.6	14	78	15	59	63	0	6	30	1.19
6817033--6817083	26	1.9	27	88	11	79	62	0	7	29	1.23
6825246--6826504	370	3.5	352	82	4	1203	38	14	12	34	1.84
6825595--6826504	176	5.1	176	83	5	1041	37	14	12	34	1.85
6826019--6826395	194	1.9	194	87	0	547	36	13	14	35	1.85
6826355--6826755	124	3.2	124	84	5	482	37	14	13	34	1.85
6828408--6828543	68	2.0	68	94	0	236	35	14	10	39	1.80
6834487--6834617	34	3.9	34	75	6	113	37	13	11	37	1.81
6834487--6834617	67	1.9	68	81	4	158	37	13	11	37	1.81
6834569--6834639	34	2.1	33	82	7	81	29	15	18	36	1.92
6837154--6837202	21	2.4	20	82	3	53	14	4	6	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6837760--6838028	138	2.0	137	91	3	443	53	7	10	29	1.60
6837963--6838155	49	4.1	49	83	9	242	54	7	12	25	1.63
6840205--6840246	21	2.0	21	95	0	75	26	28	11	33	1.92
6849761--6849996	43	5.5	43	79	8	214	25	12	16	44	1.83
6849758--6849995	86	2.8	86	79	3	264	26	12	16	44	1.83
6849761--6849996	129	1.8	129	80	7	282	25	12	16	44	1.83
6850759--6850795	14	2.7	14	84	15	51	62	0	32	5	1.18
6851059--6851096	18	2.1	18	85	9	51	15	0	5	78	0.91
6853351--6853666	157	2.0	160	93	2	539	35	8	10	45	1.70
6854568--6854618	26	1.9	27	88	11	79	29	7	0	62	1.23
6854568--6854618	13	3.8	14	82	15	63	29	7	0	62	1.23
6855908--6855963	20	2.8	21	81	8	71	17	8	1	71	1.21
6858407--6858597	60	3.2	61	79	7	187	36	18	5	39	1.73
6859415--6859541	63	2.0	61	86	3	173	37	22	5	34	1.78
6866624--6866958	166	2.0	166	96	0	616	31	17	16	34	1.92
6868248--6868791	191	2.8	193	78	10	560	38	9	6	45	1.63
6870299--6870343	3	15.0	3	100	0	90	33	0	0	66	0.92
6873288--6873329	10	3.9	11	82	11	52	52	4	0	42	1.22
6873528--6873578	21	2.5	21	80	3	59	54	3	5	35	1.43
6873639--6873671	17	1.9	17	93	0	57	45	0	6	48	1.27
6873683--6873728	21	2.2	21	84	0	56	47	6	2	43	1.41
6881695--6881741	22	2.2	22	92	3	78	25	10	4	59	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6890906--6890934	15	1.9	15	100	0	58	55	6	17	20	1.65
6893273--6893315	19	2.2	20	83	4	52	74	2	2	20	1.04
6894830--6894859	3	10.0	3	100	0	60	66	0	0	33	0.92
6894861--6894892	3	10.7	3	93	0	55	68	28	0	3	1.04
6894855--6894895	12	3.4	12	89	0	64	68	21	2	7	1.26
6896021--6896067	15	2.9	17	81	15	55	72	0	14	12	1.13
6896242--6896409	84	2.0	83	90	7	270	58	3	22	15	1.53
6899770--6900015	65	3.8	66	78	4	216	39	15	15	30	1.88
6902571--6902611	19	2.2	19	95	0	73	75	12	4	7	1.16
6902846--6902872	3	9.0	3	100	0	54	33	0	0	66	0.92
6909343--6909409	6	10.7	6	73	20	57	53	1	40	4	1.30
6909341--6909411	21	3.1	23	75	15	67	56	1	38	4	1.28
6912978--6913017	21	2.0	20	90	9	64	40	10	15	35	1.80
6914562--6914612	13	3.8	13	75	10	57	27	3	1	66	1.20
6914557--6914618	28	2.2	28	88	0	97	32	3	1	62	1.20
6915639--6915766	61	2.1	61	82	2	159	40	22	7	29	1.80
6915726--6915878	61	2.5	61	76	7	148	42	18	3	35	1.69
6915851--6915903	25	2.1	25	86	6	72	39	20	1	37	1.64
6916217--6916275	26	2.3	26	85	2	75	42	18	3	35	1.67
6916152--6916317	86	1.9	87	84	6	221	43	19	2	34	1.64
6915554--6916308	405	1.9	405	80	5	891	39	19	5	35	1.74
6916354--6916492	61	2.3	60	82	6	190	44	14	4	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6917071--6917130	25	2.4	25	100	0	120	41	18	0	40	1.50
6917444--6917502	26	2.3	26	85	2	75	42	18	3	35	1.67
6925938--6926057	61	2.0	61	88	3	179	41	17	5	35	1.71
6926216--6926266	26	2.0	26	88	0	75	37	21	0	41	1.54
6927125--6927219	47	2.0	47	89	4	147	42	12	5	40	1.65
6928388--6928415	2	14.0	2	100	0	56	50	0	0	50	1.00
6929452--6929512	28	2.2	28	96	0	113	39	29	13	18	1.88
6930405--6930434	13	2.3	13	94	0	51	46	0	0	53	1.00
6930624--6930664	14	2.9	14	82	13	57	46	0	0	53	1.00
6930778--6930816	17	2.4	16	91	8	62	46	2	0	51	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106