genome.fa.s57.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  45  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7817155--7817362	114	1.8	113	84	4	283	35	8	5	50	1.57
7817155--7817439	114	2.5	111	80	10	276	34	8	5	51	1.56
7817254--7817436	55	3.3	54	76	13	131	32	8	6	52	1.57
7819643--7819725	3	26.7	3	76	11	78	30	4	1	63	1.22
7819643--7819724	31	2.7	31	80	10	100	30	4	1	63	1.23
7819643--7819770	14	8.9	14	70	19	77	27	3	2	66	1.21
7819642--7819773	13	10.1	13	73	15	53	27	3	2	66	1.20
7820509--7820542	3	11.0	3	93	6	59	32	0	0	67	0.91
7820509--7820586	9	8.3	10	76	13	60	26	2	3	66	1.22
7820556--7820595	20	2.0	20	90	4	64	17	7	0	75	1.03
7820671--7820704	15	2.3	15	90	5	52	61	8	0	29	1.26
7832496--7832848	127	2.8	129	82	6	325	24	11	20	42	1.86
7832479--7833174	41	16.5	43	75	12	445	24	13	18	42	1.87
7832494--7833048	172	3.3	171	87	4	756	24	12	19	43	1.86
7833022--7833181	40	3.8	40	77	11	137	25	18	16	39	1.91
7833206--7833241	14	2.5	15	90	4	56	88	11	0	0	0.50
7833206--7833241	17	2.1	17	90	10	56	88	11	0	0	0.50
7833401--7833430	5	6.0	5	92	0	51	43	0	0	56	0.99
7833434--7833569	3	44.7	3	74	17	95	27	4	2	66	1.23
7833425--7833520	48	2.0	48	83	4	122	30	3	1	65	1.15
7833434--7833573	31	4.4	30	73	21	101	26	4	2	67	1.21
7833432--7833576	55	2.7	55	84	9	165	25	4	2	67	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7834469--7834502	15	2.3	15	90	5	52	61	8	0	29	1.26
7835217--7835283	21	3.1	22	80	10	75	49	10	5	34	1.62
7835230--7835348	21	5.7	20	71	12	69	46	8	8	36	1.65
7835606--7835636	2	15.5	2	100	0	62	51	0	0	48	1.00
7840488--7840532	20	2.3	20	84	3	56	8	2	15	73	1.18
7852265--7852317	26	2.0	26	100	0	106	39	18	15	26	1.90
7853909--7854179	23	11.2	23	70	14	154	53	2	1	42	1.21
7853996--7854125	41	3.4	40	75	18	141	53	3	0	43	1.16
7853927--7854171	31	7.9	31	69	20	113	54	2	0	42	1.21
7854208--7854253	19	2.4	19	85	7	58	43	2	0	54	1.12
7854281--7854339	26	2.4	24	86	8	82	50	5	0	44	1.24
7854313--7854363	21	2.3	23	80	9	63	49	0	1	49	1.12
7854456--7854488	14	2.5	13	86	13	50	36	0	3	60	1.12
7855126--7855181	16	3.4	17	78	7	53	14	3	3	78	1.02
7859720--7859769	20	2.5	19	75	18	57	46	0	2	52	1.12
7860414--7860463	20	2.5	20	81	9	57	78	8	0	14	0.97
7861909--7861989	16	4.9	16	79	11	92	46	35	0	17	1.48
7861909--7861989	32	2.5	33	84	8	103	46	35	0	17	1.48
7861909--7862045	16	8.6	16	72	13	86	46	31	0	21	1.52
7862054--7862082	14	2.0	15	93	6	51	48	41	0	10	1.37
7862180--7862214	12	2.8	13	91	8	56	31	37	5	25	1.80
7868435--7868480	8	5.5	8	80	10	56	86	10	2	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7870609--7870736	23	5.7	22	76	9	107	26	21	21	30	1.98
7870912--7870959	23	2.2	22	85	7	62	27	25	20	27	1.99
7870921--7870974	23	2.4	23	87	3	74	22	25	24	27	2.00
7870921--7870982	22	2.8	22	85	2	61	24	22	20	32	1.98
7871043--7871112	22	3.2	23	78	12	74	25	20	20	34	1.96
7871172--7871239	22	3.0	23	89	6	104	23	17	23	35	1.95
7870802--7871281	131	3.7	130	79	7	461	23	19	18	38	1.94
7871432--7871481	20	2.5	20	84	9	66	78	6	0	16	0.95
7872873--7872960	32	2.7	34	84	12	121	47	35	0	17	1.47
7872873--7872958	16	5.2	16	82	2	100	48	34	0	16	1.46
7872971--7873017	14	3.3	14	80	11	51	44	36	0	19	1.51
7874038--7874099	31	2.0	31	96	0	115	41	14	12	30	1.83
7880509--7880659	13	11.2	13	65	25	57	53	3	0	43	1.17
7880518--7880644	53	2.5	51	77	14	129	54	2	0	43	1.13
7880513--7880616	55	1.9	54	81	12	126	54	2	0	42	1.15
7880688--7880810	15	7.8	16	69	22	57	45	0	1	52	1.16
7880747--7880819	9	8.6	9	70	22	50	47	0	0	52	1.00
7880754--7880845	25	3.7	25	75	8	82	50	0	0	50	1.00
7880716--7880834	57	2.0	60	82	10	149	47	0	0	52	1.06
7882654--7882692	17	2.4	17	86	4	53	41	10	0	48	1.37
7883970--7883997	6	4.7	6	100	0	56	0	32	0	67	0.91
7883956--7884013	28	2.1	27	81	9	64	1	27	1	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7889522--7889579	30	1.9	30	89	0	89	46	12	10	31	1.74
7891660--7891748	20	4.6	19	78	10	81	50	33	2	13	1.54
7891658--7891748	39	2.3	39	82	0	119	49	35	2	13	1.54
7892735--7893719	162	6.1	162	79	5	913	34	9	14	41	1.79
7892766--7893719	323	3.0	317	80	5	1013	34	10	14	40	1.80
7894748--7894788	15	2.6	16	78	17	50	63	0	29	7	1.21
7906003--7906055	27	2.0	27	88	0	79	20	20	18	39	1.92
7906008--7906068	27	2.3	27	82	5	70	19	26	16	37	1.93
7910236--7910272	19	1.9	19	94	0	65	27	2	13	56	1.50
7910393--7910424	13	2.4	14	94	5	57	81	0	3	15	0.82
7911295--7911451	37	4.5	37	72	14	93	56	5	3	35	1.38
7911295--7911351	3	20.3	3	77	13	59	63	1	1	33	1.15
7911699--7912120	121	3.5	119	83	2	495	45	15	22	17	1.85
7912830--7912999	56	3.0	56	86	6	209	14	21	13	51	1.76
7919875--7919908	15	2.3	15	90	5	52	2	26	5	64	1.30
7922708--7922831	39	3.2	38	76	7	131	61	4	14	19	1.51
7922723--7922833	41	2.8	38	76	10	114	61	5	15	18	1.52
7923527--7923552	11	2.4	11	100	0	52	15	0	0	84	0.62
7923561--7923598	18	2.1	18	95	0	67	31	0	13	55	1.38
7923703--7923745	13	3.3	13	83	9	52	79	2	2	16	0.95
7923716--7923745	13	2.4	13	94	5	53	83	0	0	16	0.65
7923718--7923753	18	1.9	19	94	5	65	83	0	2	13	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7924645--7924696	20	2.6	20	76	17	54	51	7	1	38	1.42
7924645--7924721	23	3.4	23	77	18	81	51	6	1	40	1.36
7925976--7926179	63	3.3	62	73	9	155	38	13	14	33	1.85
7946269--7946321	28	1.9	27	88	3	79	47	9	7	35	1.64
7946421--7946456	16	2.3	15	90	4	54	47	19	0	33	1.50
7960247--7960283	18	2.1	18	94	0	65	35	13	27	24	1.93
7962508--7962544	18	2.2	18	90	9	60	8	2	5	83	0.88
7964842--7964946	12	8.3	13	74	13	60	14	4	8	72	1.25
7964842--7964882	18	2.3	18	91	0	64	9	2	4	82	0.89
7964855--7964889	13	2.8	13	91	8	56	8	0	8	82	0.83
7964842--7964919	31	2.5	31	83	6	95	11	3	8	75	1.16
7964915--7964956	20	2.0	21	86	4	59	23	4	4	66	1.30
7964914--7964948	13	2.6	13	90	4	52	22	5	8	62	1.45
7967846--7967883	20	1.9	19	89	5	58	13	42	23	21	1.88
7968095--7968144	25	2.0	26	84	4	66	18	2	14	66	1.35
7968408--7968453	14	3.1	14	81	9	56	78	0	21	0	0.76
7968412--7968480	10	7.2	9	76	16	68	79	0	17	2	0.85
7968426--7968479	24	2.2	24	81	18	76	79	0	16	3	0.87
7968412--7968486	18	4.2	17	76	20	73	80	0	16	4	0.87
7968489--7968545	3	19.0	3	100	0	114	66	0	0	33	0.92
7968740--7968979	48	5.0	48	81	10	287	39	20	12	27	1.89
7968696--7968979	92	3.0	93	76	16	282	39	20	13	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7968680--7968922	44	5.3	44	85	7	274	41	19	13	26	1.88
7968900--7969053	80	1.9	81	84	4	204	37	20	13	28	1.90
7968808--7969152	174	2.0	172	87	2	496	39	19	13	28	1.89
7968985--7969202	49	4.6	49	74	11	182	38	20	11	28	1.88
7980278--7980310	14	2.4	14	90	10	50	6	3	9	81	0.95
7981303--7981332	14	2.1	15	93	6	53	30	0	0	70	0.88
7983356--7983437	34	2.4	34	83	2	103	46	8	4	40	1.56
7990435--7990466	16	1.9	17	93	6	57	68	0	18	12	1.20
7992514--7992550	3	12.0	3	94	5	65	32	0	2	64	1.07
7993428--7993478	11	4.6	11	80	9	50	21	0	5	72	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106