genome.fa.s57.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  47  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8179151--8179325	83	2.1	83	80	4	192	41	17	13	27	1.87
8179457--8179590	40	3.3	40	72	7	119	38	14	13	33	1.86
8179451--8179626	81	2.2	80	80	7	205	37	13	16	32	1.87
8179712--8179802	40	2.3	40	83	7	105	34	9	10	45	1.73
8179868--8179978	40	2.8	37	79	11	107	41	10	10	36	1.75
8179948--8180099	40	3.8	41	78	6	152	40	15	7	36	1.74
8179948--8180099	81	1.9	79	82	8	191	40	15	7	36	1.74
8182576--8182752	37	4.8	37	75	10	150	37	11	17	33	1.86
8184926--8185049	19	6.4	18	67	13	61	19	0	30	49	1.54
8184962--8185090	66	2.0	65	96	1	240	20	0	31	48	1.50
8185072--8185159	48	1.9	46	84	11	119	17	0	34	48	1.47
8184913--8185057	19	7.5	19	66	17	59	20	0	31	48	1.54
8185116--8185258	19	7.7	18	78	10	85	16	2	34	45	1.62
8185116--8185258	57	2.5	55	78	8	126	16	2	34	45	1.62
8185174--8185267	19	5.0	19	82	6	93	18	5	31	44	1.72
8185265--8185289	12	2.1	12	100	0	50	8	0	56	36	1.29
8185116--8185315	38	5.3	37	70	12	113	17	3	36	43	1.64
8189431--8189469	20	2.0	20	94	0	69	58	10	2	28	1.44
8191134--8191186	16	3.4	16	78	2	54	33	3	11	50	1.56
8193358--8193390	13	2.5	13	95	5	57	57	0	9	33	1.30
8204496--8204525	2	15.0	2	100	0	60	0	50	0	50	1.00
8204525--8204550	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8205422--8205653	83	2.8	83	74	11	197	46	5	2	46	1.38
8205420--8205650	41	5.6	41	71	9	128	46	5	2	45	1.38
8205505--8205676	10	16.5	10	70	11	78	45	5	2	45	1.40
8205353--8205676	21	15.8	20	75	9	192	46	4	1	46	1.35
8206566--8206614	23	2.1	23	92	0	80	40	6	18	34	1.75
8207505--8207542	12	3.2	12	88	7	51	47	5	0	47	1.24
8210286--8210334	20	2.5	20	96	0	89	44	10	16	28	1.80
8216926--8217130	107	1.9	107	82	11	260	32	13	12	41	1.82
8217000--8217079	40	2.0	39	85	2	106	36	8	11	43	1.71
8216932--8217145	34	6.2	34	75	17	156	33	14	13	39	1.84
8216926--8217153	107	2.1	107	80	10	254	33	13	12	41	1.81
8217513--8217838	34	9.5	34	72	8	194	28	17	15	38	1.90
8217585--8217854	139	1.9	139	82	7	334	28	17	15	38	1.91
8217513--8217859	68	5.1	67	75	7	270	28	17	15	39	1.90
8217824--8217912	47	1.9	46	83	2	115	29	11	14	44	1.80
8217871--8217993	35	3.5	35	82	2	122	25	13	17	44	1.84
8217989--8218071	42	2.0	42	85	7	114	31	10	15	42	1.82
8222526--8222735	113	1.9	113	82	5	264	40	6	12	40	1.68
8222703--8222759	25	2.2	26	87	3	80	35	3	17	43	1.66
8223207--8223269	32	2.0	32	81	6	74	69	0	0	30	0.88
8223207--8223271	23	2.7	25	81	11	66	69	0	0	30	0.89
8223440--8223477	19	2.0	20	84	5	51	21	5	2	71	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8224280--8224309	14	2.1	14	93	0	51	33	0	10	56	1.32
8226140--8226167	2	14.0	2	100	0	56	50	0	0	50	1.00
8227198--8227279	11	7.7	11	71	19	68	54	3	0	41	1.18
8227218--8227281	21	3.0	21	86	4	94	57	3	0	39	1.14
8227198--8227281	42	2.0	41	86	11	118	55	3	0	40	1.17
8227191--8227277	33	2.7	30	81	13	77	56	3	0	40	1.16
8227359--8227422	21	3.0	21	71	13	58	53	10	1	34	1.46
8231722--8231878	52	3.0	52	85	1	199	26	24	7	40	1.82
8231905--8231944	11	3.6	11	90	10	64	52	27	0	20	1.46
8232806--8232962	52	3.0	51	86	3	197	26	24	7	40	1.82
8236400--8236437	20	1.9	20	94	0	67	52	0	0	47	1.00
8238817--8238851	8	4.1	8	86	13	52	40	0	0	60	0.97
8238811--8238891	26	3.3	26	80	11	82	43	0	0	56	0.99
8238840--8238891	22	2.4	22	90	9	81	48	0	0	51	1.00
8241349--8241432	43	2.0	43	88	4	125	26	8	21	44	1.80
8249273--8249325	19	2.8	18	80	5	61	43	0	1	54	1.11
8252596--8252629	2	17.0	2	87	0	50	44	0	5	50	1.26
8257862--8257913	21	2.5	21	75	6	52	48	1	11	38	1.51
8258136--8258184	20	2.4	19	77	12	53	38	2	2	57	1.22
8258160--8258219	15	3.9	15	74	12	50	33	1	3	61	1.22
8260346--8260388	14	2.8	16	75	17	54	39	0	20	39	1.53
8260951--8260992	16	2.9	15	80	19	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8261012--8261057	18	2.6	18	78	0	56	34	2	8	54	1.43
8261540--8261582	18	2.3	19	84	4	52	53	4	0	41	1.21
8265463--8265605	40	3.6	40	97	0	259	44	2	4	48	1.36
8265488--8265593	22	5.2	22	65	32	74	48	2	4	44	1.38
8265474--8265571	18	5.0	18	66	29	58	45	2	5	46	1.36
8265502--8265628	20	6.5	19	71	24	77	48	2	3	45	1.34
8268942--8269011	16	4.4	16	80	3	52	24	5	12	57	1.57
8268949--8269008	16	3.9	15	80	6	66	21	6	13	58	1.58
8269233--8269265	16	2.1	16	88	11	50	54	3	0	42	1.15
8271733--8271781	6	8.3	6	75	20	50	65	0	0	34	0.93
8271732--8271784	18	2.9	19	81	13	76	62	0	0	37	0.96
8271734--8271779	23	2.0	24	91	4	76	63	0	0	36	0.95
8271781--8271809	12	2.4	12	100	0	58	62	0	0	37	0.96
8271732--8271808	36	2.1	35	83	9	93	63	0	0	36	0.95
8272375--8272400	5	5.2	5	100	0	52	0	0	80	19	0.71
8275027--8275348	59	5.4	60	82	9	342	34	7	9	48	1.64
8275025--8275338	58	5.3	59	82	9	338	35	7	8	48	1.64
8276612--8276658	22	2.1	22	100	0	94	27	12	23	36	1.91
8281300--8281578	137	2.0	137	93	0	479	39	15	17	27	1.90
8282435--8282598	82	2.0	82	98	0	319	22	25	16	35	1.95
8283359--8283392	17	2.0	17	88	0	50	44	5	0	50	1.26
8284225--8284259	16	2.2	16	89	0	52	40	11	14	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8291806--8291838	17	2.0	17	88	5	50	36	0	0	63	0.95
8294047--8294098	6	8.7	6	91	0	86	80	0	3	15	0.85
8294415--8294457	19	2.4	17	82	17	52	62	6	0	30	1.21
8300441--8300476	18	2.1	17	89	5	54	63	0	2	33	1.08
8304514--8304595	7	11.7	7	74	23	50	68	1	3	26	1.14
8305842--8305890	25	2.0	25	84	8	64	38	8	6	46	1.58
8306034--8306097	25	2.6	26	78	9	71	43	10	3	42	1.55
8307008--8307041	15	2.4	14	95	5	59	17	0	0	82	0.67
8307164--8307213	4	12.8	4	82	4	66	70	2	4	24	1.15
8307165--8307220	23	2.4	23	82	5	69	69	1	3	25	1.14
8307389--8307428	8	4.9	8	84	6	53	7	2	2	87	0.71
8307386--8307431	17	2.6	18	86	6	67	10	2	2	84	0.79
8307454--8307862	44	9.4	44	74	10	306	44	17	11	26	1.83
8307469--8307855	131	3.0	130	82	4	460	44	16	12	26	1.83
8307562--8307862	87	3.5	85	78	7	259	44	17	12	25	1.84
8308067--8308100	16	2.1	17	88	5	52	41	11	14	32	1.82
8308109--8308200	36	2.5	37	91	3	150	39	18	10	31	1.85
8308475--8308790	21	15.9	21	77	13	207	37	13	11	38	1.80
8308473--8308797	42	8.1	42	80	12	298	37	14	10	37	1.81
8309916--8310006	17	5.5	17	72	17	84	7	19	1	71	1.17
8309916--8309994	25	3.2	24	78	5	86	7	17	1	73	1.13
8309919--8310006	33	2.7	31	84	5	95	7	20	1	70	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8314941--8314974	17	2.0	17	88	11	52	0	29	0	70	0.87
8320725--8320789	26	2.5	25	74	16	69	46	1	4	47	1.32
8320758--8320879	16	7.3	16	70	18	63	50	0	2	46	1.14
8320781--8320834	17	2.8	20	73	21	62	57	0	0	42	0.98
8320797--8320826	14	2.1	14	93	0	51	56	0	0	43	0.99
8320778--8320868	34	2.6	35	80	11	91	57	0	1	41	1.06
8320883--8320922	16	2.6	15	88	7	62	40	0	2	57	1.12
8320884--8321037	13	11.9	13	72	18	101	42	1	1	53	1.20
8320943--8321016	18	4.1	18	70	16	64	43	1	1	54	1.17
8320883--8321040	63	2.4	66	80	12	175	42	1	1	54	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106