genome.fa.s57.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  64  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11658314--11658355	19	2.2	19	95	0	75	38	16	19	26	1.92
11660586--11660648	11	5.3	11	73	17	54	49	0	4	46	1.23
11660582--11660662	6	13.2	6	69	18	51	49	0	4	45	1.23
11660581--11660631	13	4.1	13	77	7	52	47	0	3	49	1.20
11660677--11660719	19	2.3	19	92	8	70	32	0	0	67	0.91
11660831--11660877	23	2.1	23	84	4	60	44	6	4	44	1.49
11663151--11663184	15	2.2	16	94	5	61	26	11	0	61	1.30
11667956--11667995	20	2.0	20	90	5	62	57	0	0	42	0.98
11668889--11668919	15	2.1	15	93	0	53	6	29	0	64	1.18
11669552--11669930	70	5.4	70	75	11	249	40	11	8	39	1.72
11669516--11670013	142	3.5	139	78	8	404	39	11	7	40	1.70
11669516--11670054	72	7.6	72	74	9	382	39	12	7	41	1.71
11670117--11670175	31	1.9	31	92	0	100	37	1	3	57	1.25
11670195--11670245	24	2.0	26	92	7	88	64	7	7	19	1.44
11674410--11674454	22	2.0	22	91	0	72	46	2	4	46	1.35
11677186--11677347	18	9.7	18	70	19	95	53	1	0	45	1.11
11677192--11677353	15	11.0	15	70	17	90	52	1	0	45	1.11
11677211--11677253	10	4.2	10	76	5	50	51	0	0	48	1.00
11677186--11677369	23	7.5	23	70	21	97	52	1	0	45	1.10
11677445--11677474	16	1.9	16	93	6	53	53	0	0	46	1.00
11677636--11677669	14	2.4	14	95	0	59	38	0	2	58	1.13
11679582--11679701	60	2.0	61	80	8	138	40	3	0	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11679616--11679701	30	2.9	29	84	6	118	39	1	0	59	1.05
11679662--11679697	18	2.0	18	88	0	54	33	0	0	66	0.92
11680199--11680248	18	2.6	19	72	18	50	58	0	2	40	1.10
11683744--11683790	21	2.2	21	85	7	60	55	4	0	40	1.19
11684012--11684053	22	2.0	22	90	4	68	69	4	2	23	1.20
11684118--11684160	18	2.4	18	80	0	50	27	2	2	67	1.15
11684257--11684302	17	2.6	18	82	6	58	28	2	2	67	1.14
11685239--11685314	24	3.0	25	75	9	66	55	2	0	42	1.14
11685247--11685353	24	4.6	23	69	15	69	49	0	0	49	1.07
11685307--11685404	51	1.9	50	81	6	117	38	3	1	57	1.21
11685358--11685409	11	4.6	11	78	2	50	36	3	0	59	1.16
11685367--11685400	5	6.4	5	87	12	50	35	5	0	58	1.22
11685358--11685399	22	1.9	22	90	0	66	35	4	0	59	1.19
11690611--11690663	23	2.3	22	78	9	61	52	0	3	43	1.19
11690610--11690667	24	2.5	24	80	11	66	53	0	3	43	1.17
11694204--11694261	28	2.1	27	87	12	84	46	6	6	39	1.57
11698012--11698053	17	2.4	18	80	11	52	66	2	9	21	1.32
11701830--11701870	2	20.5	2	100	0	82	51	0	0	48	1.00
11702017--11702050	2	17.0	2	100	0	68	50	0	0	50	1.00
11702221--11702342	21	5.7	21	78	8	113	30	6	12	50	1.65
11702224--11702342	42	2.8	42	80	5	132	31	5	12	50	1.64
11702293--11702358	22	3.0	22	77	0	69	36	3	6	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11702706--11702770	22	3.0	22	88	0	94	41	10	7	40	1.69
11702784--11702866	22	3.8	21	77	6	76	39	2	4	53	1.35
11702898--11703006	22	5.0	22	82	6	105	41	11	2	44	1.56
11702900--11703007	44	2.5	44	84	3	128	40	11	2	45	1.54
11703214--11703269	22	2.5	22	81	13	62	35	3	3	57	1.34
11703315--11703417	22	4.7	22	81	2	118	36	9	4	48	1.58
11703315--11703414	43	2.3	43	82	1	110	36	10	5	49	1.58
11704160--11704232	38	1.9	38	83	2	94	31	9	12	46	1.74
11705169--11705214	18	2.6	18	85	0	65	67	21	0	10	1.21
11705815--11705861	23	2.1	22	84	4	58	44	10	10	34	1.74
11706020--11706065	18	2.6	18	92	0	74	36	10	15	36	1.82
11706115--11706199	34	2.5	34	78	5	91	27	16	22	34	1.95
11706328--11706368	17	2.4	17	95	0	73	48	14	17	19	1.81
11706212--11706362	82	1.8	82	81	0	185	43	9	17	30	1.80
11706349--11706455	34	3.2	34	73	6	101	42	10	17	29	1.83
11706453--11706644	102	1.9	102	80	4	226	36	15	14	33	1.88
11706555--11706662	17	6.4	17	74	0	81	32	14	15	37	1.89
11706464--11706655	51	3.8	50	71	9	165	36	16	14	32	1.89
11706899--11707107	68	3.1	68	70	13	169	44	14	5	35	1.68
11706923--11707066	23	6.3	23	70	13	66	44	16	4	34	1.67
11706937--11707039	23	4.6	22	72	14	68	43	20	2	33	1.67
11706900--11707160	22	11.4	23	70	14	128	44	13	5	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11706835--11707166	46	7.4	45	76	7	228	44	12	6	36	1.68
11706924--11707134	68	3.1	66	71	16	169	44	14	5	35	1.68
11710012--11710084	34	2.1	34	92	5	121	35	12	17	34	1.88
11710024--11710100	34	2.3	34	84	8	95	38	10	15	35	1.82
11711353--11711386	10	3.3	10	84	8	50	85	5	0	8	0.75
11714357--11714399	22	2.0	22	90	0	68	6	41	2	48	1.43
11715906--11715951	3	15.0	3	82	13	58	32	4	0	63	1.14
11715911--11715960	16	3.2	16	91	8	77	32	4	0	64	1.12
11715920--11715987	22	3.1	21	85	10	84	29	2	0	67	1.05
11715912--11715996	28	3.1	26	80	14	75	28	2	0	69	1.01
11715953--11715997	14	3.2	14	84	9	65	24	0	0	75	0.80
11715953--11715997	7	6.6	7	82	12	58	24	0	0	75	0.80
11715937--11715990	21	2.5	21	88	8	74	25	1	0	72	0.95
11715937--11715996	20	2.9	20	82	9	68	26	1	0	71	0.95
11717185--11717231	17	2.9	16	75	9	51	72	6	0	21	1.07
11717380--11717428	25	2.0	25	84	8	64	55	0	2	42	1.11
11717385--11717428	22	2.0	22	82	4	54	56	0	2	40	1.11
11720742--11720805	6	11.3	6	69	24	50	15	18	3	62	1.45
11725083--11725112	15	2.0	15	93	0	51	30	6	23	40	1.80
11725098--11725818	49	14.8	48	79	7	614	28	11	19	41	1.86
11725098--11725818	50	14.7	49	79	7	673	28	11	19	41	1.86
11725123--11725804	145	4.7	145	83	7	783	28	10	19	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11725866--11725895	3	10.0	3	92	0	51	33	3	0	63	1.11
11725897--11725926	7	4.4	7	91	8	53	23	0	0	76	0.78
11725897--11725932	13	2.8	13	91	4	56	22	0	0	77	0.76
11725875--11725932	6	9.3	6	83	7	53	25	1	0	72	0.94
11728631--11728716	41	2.1	40	89	2	127	31	12	16	39	1.86
11728778--11728811	14	2.4	14	90	9	52	38	0	2	58	1.13
11732316--11732368	3	17.7	3	100	0	106	67	0	0	32	0.91
11734083--11734134	25	2.1	24	82	7	59	53	1	1	42	1.23
11734791--11734938	19	7.8	19	73	10	88	24	10	25	39	1.87
11734769--11734899	38	3.5	37	73	13	104	22	10	25	41	1.86
11734957--11734991	18	1.9	18	94	0	61	11	5	37	45	1.64
11740581--11740611	16	1.9	16	100	0	62	41	25	6	25	1.79
11744265--11744312	13	3.8	13	76	15	55	20	6	2	70	1.19
11751125--11751165	12	3.4	12	86	0	55	19	31	36	12	1.89
11752866--11752896	2	15.5	2	100	0	62	51	0	48	0	1.00
11754528--11754581	19	2.9	19	78	10	67	27	11	35	25	1.90
11759876--11759912	18	2.1	18	89	0	56	64	0	8	27	1.21
11759903--11759953	21	2.4	21	83	0	66	52	1	5	39	1.37
11761109--11761141	2	17.0	2	93	6	59	51	0	0	48	1.00
11764278--11764336	12	4.7	12	74	17	57	33	0	0	66	0.92
11764284--11764338	22	2.5	22	75	16	60	36	0	0	63	0.95
11764270--11764334	8	8.8	8	73	20	52	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11765314--11765758	101	4.4	101	80	5	427	38	8	7	45	1.62
11765314--11765758	203	2.2	200	81	8	497	38	8	7	45	1.62
11767300--11767352	17	3.0	18	81	10	56	43	5	11	39	1.64
11767315--11767347	17	1.9	17	93	0	57	45	9	12	33	1.73
11767511--11767555	16	2.7	17	93	3	74	55	13	13	17	1.69
11767909--11768002	45	2.1	44	80	9	102	38	17	9	35	1.82
11767909--11768105	46	4.3	46	72	12	138	40	15	7	36	1.75
11768256--11768304	22	2.2	22	82	7	55	40	16	8	34	1.78
11769500--11769531	17	1.9	16	93	6	55	12	12	0	75	1.06
11769791--11769838	13	3.6	13	76	13	53	6	14	0	79	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106