genome.fa.s57.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  95  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20059768--20059830	29	2.2	29	85	0	81	38	1	1	58	1.17
20059885--20059968	15	5.7	15	70	13	57	52	2	1	44	1.21
20059861--20059964	29	3.6	29	81	13	124	52	1	0	44	1.18
20059861--20059977	29	4.0	29	76	15	96	55	2	0	41	1.19
20061497--20061527	15	2.1	15	100	0	62	41	19	6	32	1.77
20064077--20064159	42	2.0	42	90	0	130	48	9	10	31	1.70
20065511--20065545	11	3.2	11	91	0	52	40	0	2	57	1.14
20066290--20066334	21	2.3	19	92	7	72	51	0	2	46	1.13
20066287--20066337	19	2.7	19	83	16	70	49	0	1	49	1.12
20066818--20066871	27	2.0	28	81	3	65	50	3	1	44	1.30
20081485--20081527	22	2.0	22	86	9	61	34	0	2	62	1.08
20090919--20090971	20	2.7	19	83	11	63	32	1	0	66	1.03
20090938--20090984	10	4.6	10	79	10	51	34	2	0	63	1.06
20090979--20091030	21	2.4	21	76	20	54	51	0	0	48	1.00
20101105--20101129	2	12.5	2	100	0	50	52	0	0	48	1.00
20105341--20105373	2	16.5	2	93	0	57	0	51	0	48	1.00
20113510--20113589	41	2.0	41	92	0	133	22	13	13	50	1.77
20116457--20116921	231	2.0	231	97	0	885	33	11	17	36	1.86
20118392--20118421	8	3.8	8	95	0	51	53	0	0	46	1.00
20126175--20126262	28	3.1	27	68	18	72	45	28	19	6	1.76
20126151--20126262	56	2.0	56	91	0	179	45	25	19	8	1.79
20129768--20129825	21	2.8	21	83	0	71	46	0	13	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20129791--20129828	18	2.1	18	95	0	67	47	0	18	34	1.49
20141701--20141740	21	2.0	20	95	5	71	62	0	0	37	0.95
20141699--20141739	10	4.0	10	82	17	57	60	0	0	39	0.96
20144242--20144288	20	2.3	20	85	0	58	44	2	2	51	1.25
20144251--20144290	20	2.0	20	90	0	62	37	2	2	57	1.26
20145880--20145931	23	2.2	24	80	16	65	48	0	5	46	1.26
20148753--20148831	29	2.8	28	79	9	72	43	3	1	51	1.27
20149622--20149662	13	3.0	14	85	7	57	53	0	0	46	1.00
20152883--20152960	38	2.1	38	100	0	156	39	5	20	34	1.75
20155383--20155466	24	3.5	23	76	14	80	61	1	0	36	1.04
20155425--20155462	11	3.5	11	78	7	51	57	0	0	42	0.98
20155390--20155501	18	6.4	18	67	12	54	57	0	0	41	1.05
20155453--20155512	30	2.0	29	87	9	86	50	0	0	50	1.00
20155434--20155519	25	3.2	30	73	21	91	54	0	0	45	0.99
20155516--20155585	33	2.1	33	84	10	90	48	2	0	48	1.16
20155532--20155578	8	5.8	8	76	14	51	48	0	0	51	1.00
20155890--20155940	25	2.0	25	96	0	93	37	13	23	25	1.92
20155872--20156063	98	2.0	95	96	3	357	45	13	16	24	1.83
20155988--20156038	25	2.0	25	96	0	93	37	13	23	25	1.92
20156412--20156456	24	1.9	24	90	4	74	57	4	8	28	1.48
20165190--20165270	41	2.0	40	81	11	94	48	1	1	49	1.17
20168019--20168115	30	3.3	29	80	9	99	40	6	0	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20172680--20172707	14	2.0	14	100	0	56	50	0	0	50	1.00
20172680--20172726	14	2.9	16	82	14	53	48	0	0	51	1.00
20172807--20172856	5	10.0	5	75	16	50	38	2	0	60	1.09
20172801--20172856	18	2.7	22	78	18	75	39	1	0	58	1.08
20172808--20172854	11	4.1	11	78	10	58	36	2	0	61	1.08
20173535--20173567	3	10.7	3	93	6	57	33	0	0	66	0.92
20174890--20174936	23	2.0	23	84	8	60	8	6	17	68	1.37
20181073--20181099	2	13.5	2	100	0	54	48	0	51	0	1.00
20181937--20181973	2	18.5	2	100	0	74	51	0	0	48	1.00
20187585--20187613	14	2.1	14	100	0	58	51	0	0	48	1.00
20200902--20200953	15	3.5	15	84	5	61	40	0	5	53	1.25
20200913--20200962	23	2.2	23	81	0	55	42	0	8	50	1.32
20203593--20203636	3	15.0	3	90	4	72	0	29	0	70	0.88
20203596--20203636	20	2.0	20	100	0	82	0	29	0	70	0.87
20203601--20203634	17	2.0	17	100	0	68	0	29	0	70	0.87
20208203--20208264	19	3.1	22	78	21	66	51	1	0	46	1.10
20215241--20215274	2	17.5	2	87	6	52	47	2	0	50	1.16
20217306--20217440	66	2.0	67	85	1	182	56	12	6	24	1.60
20217456--20217538	42	2.0	41	95	2	148	34	16	9	38	1.82
20220531--20220562	4	8.2	4	93	6	57	50	0	0	50	1.00
20222203--20222259	26	2.2	26	93	0	96	8	28	8	54	1.61
20233149--20233251	50	2.1	50	98	0	197	37	14	19	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20236197--20236238	21	2.0	21	95	0	75	50	9	16	23	1.75
20238627--20238979	183	1.9	179	89	4	539	39	11	13	34	1.82
20240340--20240372	17	2.0	17	88	5	50	39	0	0	60	0.97
20242658--20242719	2	31.0	2	96	0	115	50	1	0	48	1.10
20243168--20243192	2	12.5	2	100	0	50	48	0	0	52	1.00
20246386--20246463	31	2.4	33	87	8	115	58	0	0	41	0.98
20247400--20247441	21	2.0	21	86	9	59	35	14	40	9	1.78
20257454--20257600	33	4.5	33	77	1	107	20	30	18	30	1.96
20257557--20257647	30	2.8	32	85	9	123	25	28	13	32	1.93
20257559--20257660	33	3.2	33	80	10	122	26	28	11	33	1.92
20264360--20264415	27	2.1	26	80	9	60	37	0	0	62	0.95
20266112--20266176	34	1.9	34	87	6	96	33	0	12	53	1.38
20266318--20266365	25	1.9	25	86	0	69	52	4	0	43	1.20
20269998--20270067	17	4.2	17	80	14	74	84	1	10	4	0.82
20270024--20270071	1	48.0	1	87	0	69	93	2	4	0	0.39
20270006--20270087	21	4.0	21	76	12	80	82	1	10	4	0.86
20270004--20270071	9	7.1	9	80	12	73	86	1	8	2	0.73
20271267--20272130	42	21.0	42	89	5	1193	23	17	22	36	1.94
20271290--20272109	83	10.0	83	92	4	1335	23	17	22	36	1.94
20272258--20272336	20	4.0	20	96	0	140	18	30	29	21	1.97
20272623--20272655	11	2.8	12	86	9	50	18	0	0	81	0.68
20272990--20273060	31	2.3	31	78	4	81	29	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20273528--20273986	156	2.9	161	94	2	777	28	14	17	40	1.88
20276353--20276444	5	17.8	5	72	20	66	77	1	6	15	1.03
20276348--20276437	20	4.2	21	80	9	85	75	1	7	15	1.08
20276353--20276444	6	14.5	6	71	17	62	77	1	6	15	1.03
20276383--20276444	26	2.3	27	89	8	92	79	0	6	14	0.93
20276349--20276443	47	2.0	50	86	14	137	76	1	7	14	1.05
20277413--20277564	4	38.0	4	67	17	50	65	2	3	28	1.22
20277399--20277551	24	6.3	24	70	23	81	62	2	3	31	1.25
20277379--20277580	30	7.0	30	70	16	101	63	2	3	30	1.24
20277413--20277569	60	2.6	60	79	14	153	64	3	3	29	1.25
20277891--20277926	7	5.0	7	86	6	54	13	0	0	86	0.58
20277882--20277926	15	3.1	14	87	9	63	13	0	2	84	0.72
20277900--20277924	13	1.9	13	100	0	50	12	0	0	88	0.53
20277939--20278162	41	5.4	41	84	4	254	37	21	15	25	1.93
20277939--20278190	82	3.0	82	81	5	285	39	20	14	25	1.91
20277939--20278190	41	6.1	42	84	5	230	39	20	14	25	1.91
20279679--20279754	11	6.5	11	73	23	59	9	13	0	77	0.99
20279680--20279723	14	3.3	14	90	6	65	6	11	0	81	0.86
20279679--20279754	25	3.2	25	75	18	74	9	13	0	77	0.99
20279681--20279754	24	3.2	23	79	11	71	8	13	0	78	0.96
20279693--20279754	32	1.9	32	87	12	92	8	14	0	77	0.98
20283760--20283825	24	2.9	21	81	16	78	75	0	9	15	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20283736--20283826	6	14.5	6	73	16	60	75	1	7	15	1.07
20283731--20283825	46	2.1	45	86	9	131	74	1	8	15	1.10
20283790--20283827	13	3.0	13	80	7	51	76	0	7	15	1.01
20283766--20283827	18	3.6	18	79	12	67	77	0	8	14	0.98
20284747--20284798	24	2.1	26	85	7	72	78	0	7	13	0.94
20284746--20284798	25	2.1	26	86	10	74	79	0	7	13	0.93
20284737--20284804	34	1.9	35	82	8	84	77	0	10	11	0.98
20284815--20284994	4	43.5	4	69	17	61	66	2	2	28	1.15
20284801--20284977	24	7.2	26	72	24	120	63	2	2	31	1.19
20284801--20284958	13	12.9	12	69	23	64	62	2	2	32	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106