genome.fa.s57.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  63  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11423417--11423443	3	9.0	3	100	0	54	66	0	0	33	0.92
11425009--11425067	31	1.9	31	89	0	91	66	1	3	28	1.18
11425500--11425539	21	1.9	21	84	0	53	60	0	2	37	1.11
11426179--11426213	18	1.9	18	94	0	61	42	5	14	37	1.69
11426529--11426705	88	2.0	87	92	2	293	51	6	4	37	1.48
11428094--11428133	11	3.6	11	89	0	62	55	22	0	22	1.44
11428091--11428133	22	2.0	22	95	0	77	51	23	0	25	1.49
11430625--11430783	80	2.0	80	89	0	246	38	3	5	52	1.41
11431093--11431152	31	1.9	31	83	6	77	56	3	8	31	1.45
11444712--11444753	17	2.5	17	84	0	57	61	2	0	35	1.09
11444721--11444823	30	3.7	28	72	7	75	58	6	0	33	1.31
11444739--11444812	29	2.5	31	83	14	104	59	9	0	31	1.29
11444778--11444848	36	1.9	36	85	2	97	64	5	1	28	1.24
11444759--11444854	36	2.6	35	79	8	93	64	7	1	27	1.26
11444904--11444970	31	2.1	31	88	2	98	61	2	1	34	1.20
11445201--11445255	28	2.0	28	88	0	83	61	7	0	30	1.23
11445209--11445251	14	3.1	14	74	12	52	60	9	0	30	1.28
11457391--11457469	23	3.5	23	75	13	67	48	3	1	46	1.28
11457942--11457968	14	1.9	14	100	0	54	44	7	3	44	1.49
11462811--11462838	13	2.2	13	100	0	56	50	0	7	42	1.30
11464571--11464701	65	2.0	65	92	0	217	36	17	11	34	1.86
11465036--11466033	369	2.7	370	92	2	1689	17	33	25	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11467187--11467230	22	2.0	22	95	0	79	43	13	11	31	1.80
11470884--11470942	25	2.5	24	81	13	68	44	16	23	15	1.86
11474836--11474932	29	3.5	26	71	20	72	34	0	0	65	0.93
11474888--11474932	16	2.7	16	79	6	54	31	0	0	68	0.89
11474894--11474940	24	1.9	25	86	4	69	38	0	0	61	0.96
11475949--11475988	19	2.0	21	85	9	57	65	2	0	32	1.06
11476554--11476605	16	3.2	16	75	2	59	75	0	7	17	1.03
11476723--11476772	26	2.0	26	84	7	68	64	4	0	32	1.12
11479289--11479343	26	2.2	25	86	3	74	50	0	0	49	1.00
11479305--11479343	13	3.1	13	88	3	62	51	0	0	48	1.00
11479311--11479382	12	6.0	12	73	16	51	56	0	4	38	1.18
11479327--11479382	23	2.4	24	79	11	62	58	0	5	35	1.21
11480764--11481116	176	2.0	176	91	2	566	32	16	9	41	1.80
11481322--11481354	13	2.3	15	90	10	52	12	6	0	81	0.85
11481312--11481355	22	2.0	22	86	4	61	11	4	2	81	0.92
11491712--11491766	28	2.0	28	82	7	67	21	3	1	72	1.09
11492045--11492118	36	2.0	38	81	5	89	51	4	4	40	1.40
11492266--11492290	6	4.2	6	100	0	50	16	16	0	68	1.22
11494110--11494146	14	2.5	15	91	4	58	59	0	5	35	1.20
11494053--11494388	165	2.1	162	86	3	469	53	3	5	36	1.43
11501705--11502023	167	1.9	167	90	0	512	35	13	12	37	1.84
11505973--11506186	115	1.9	115	91	2	349	43	20	12	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11512581--11512622	22	2.0	21	85	4	57	57	2	14	26	1.50
11516206--11516562	181	2.0	181	92	1	599	49	8	11	30	1.69
11519464--11519509	20	2.2	20	81	14	58	39	0	0	60	0.97
11524210--11524242	14	2.2	16	89	10	52	36	0	18	45	1.49
11536261--11536321	30	2.1	29	87	3	86	50	14	19	14	1.77
11544699--11544737	12	3.2	12	77	0	51	41	0	0	58	0.98
11544994--11545023	13	2.3	13	94	0	51	3	16	0	80	0.85
11546630--11546678	23	2.2	23	92	7	84	48	0	0	51	1.00
11546629--11546679	21	2.5	20	84	15	68	49	0	0	50	1.00
11546629--11546681	22	2.5	20	80	16	63	50	0	0	49	1.00
11548200--11548249	24	2.1	23	82	10	57	24	2	2	72	1.06
11548211--11548285	31	2.4	30	81	16	82	33	1	4	61	1.23
11549581--11549636	28	2.0	26	83	16	69	50	8	0	41	1.34
11552088--11552255	59	2.8	57	73	12	142	45	13	2	38	1.58
11553009--11553061	17	3.1	18	70	26	51	50	1	0	47	1.12
11554149--11554190	18	2.4	18	88	4	59	52	7	0	40	1.29
11555333--11555367	3	11.3	3	87	6	52	31	2	2	62	1.24
11556144--11556182	20	2.0	20	85	10	53	25	2	5	66	1.25
11556397--11556443	20	2.3	21	78	14	53	55	4	0	40	1.19
11557437--11557591	84	1.8	84	94	0	274	24	8	8	58	1.55
11557724--11557750	14	1.9	14	100	0	54	0	14	0	85	0.61
11560876--11561260	58	6.4	59	85	9	480	35	11	8	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11561063--11561197	67	2.0	67	97	0	252	35	14	8	42	1.75
11561065--11561169	33	3.2	33	64	8	86	34	15	6	43	1.73
11561364--11561402	4	9.5	4	83	5	51	74	0	0	25	0.82
11561364--11561406	17	2.6	16	85	7	59	76	0	0	23	0.78
11561367--11561409	21	2.2	19	87	8	59	79	0	0	20	0.74
11561732--11561780	19	2.5	19	83	3	62	20	18	22	38	1.93
11562335--11562401	4	17.8	4	78	6	52	67	2	1	28	1.14
11562335--11562410	16	4.4	17	73	15	59	67	3	1	27	1.17
11562372--11562445	28	2.6	29	75	14	73	74	4	2	18	1.10
11562377--11562459	17	5.1	15	73	17	60	74	3	2	19	1.07
11562377--11562445	6	10.7	6	75	17	50	75	2	2	18	1.06
11562612--11562652	9	4.6	9	87	0	55	4	0	7	87	0.65
11562660--11562872	41	5.1	41	89	4	313	37	23	16	22	1.94
11562661--11562872	84	2.6	82	88	8	315	37	23	16	22	1.94
11563878--11563945	18	3.9	18	74	25	58	11	14	0	73	1.10
11563890--11563946	19	3.2	18	77	20	57	10	12	0	77	1.00
11563878--11563955	36	2.1	36	86	6	104	11	15	0	73	1.11
11563885--11563962	8	9.2	8	76	19	70	11	14	0	74	1.08
11563890--11563963	17	4.3	17	79	17	82	10	12	0	77	1.01
11576857--11576919	28	2.2	29	80	8	76	41	0	3	55	1.16
11577299--11577342	23	2.0	22	81	4	52	36	0	0	63	0.95
11580130--11580158	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11582687--11582712	1	26.0	1	100	0	52	0	0	0	100	0.00
11587014--11587156	3	51.7	3	75	18	69	34	7	1	56	1.36
11587037--11587109	5	14.6	5	80	11	87	38	4	1	56	1.27
11587020--11587105	13	6.3	13	72	18	68	36	3	2	58	1.28
11586999--11587112	50	2.2	52	82	10	130	35	5	2	57	1.35
11587021--11587160	18	8.2	17	75	12	85	35	7	1	55	1.38
11588001--11588048	20	2.3	20	79	10	53	16	2	4	77	1.03
11588170--11588203	7	4.9	7	100	0	68	70	0	0	29	0.87
11591349--11591411	29	2.2	29	85	0	81	49	19	11	20	1.78
11598053--11598096	23	2.0	22	82	13	54	18	0	22	59	1.38
11600544--11600771	120	1.9	120	83	1	296	30	8	19	41	1.81
11606653--11606701	25	2.0	25	84	8	64	28	16	0	55	1.42
11613262--11613299	17	2.2	17	86	9	51	10	5	21	63	1.46
11613786--11613810	13	1.9	13	100	0	50	56	28	0	16	1.41
11618636--11618660	13	1.9	13	100	0	50	76	0	0	24	0.80
11638532--11638593	21	3.0	20	80	20	67	45	0	4	50	1.23
11638603--11638699	30	3.2	30	80	8	108	53	3	6	37	1.42
11639873--11639952	34	2.4	34	82	4	90	33	10	8	47	1.68
11645561--11645625	10	6.8	9	85	13	60	18	4	0	76	0.95
11645548--11645626	9	8.0	10	72	22	60	17	3	2	75	1.06
11645553--11645604	14	3.6	15	84	7	72	17	1	1	78	0.93
11646916--11646952	18	2.1	18	100	0	74	40	16	16	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11649466--11649499	1	34.0	1	87	0	50	94	0	5	0	0.32
11649466--11649499	11	3.2	11	95	4	61	94	0	5	0	0.32
11649800--11649846	7	6.7	7	78	9	51	80	6	10	2	0.96
11649794--11649852	14	4.5	13	83	8	59	84	5	8	1	0.82
11649794--11649852	21	2.9	21	85	9	70	84	5	8	1	0.82
11652368--11652439	20	3.7	19	82	14	67	18	5	1	75	1.07
11652373--11652439	9	6.7	10	70	23	52	19	4	1	74	1.07
11652366--11652439	30	2.5	31	77	18	84	18	5	1	74	1.08
11652381--11652435	14	3.7	15	77	20	53	18	5	0	76	0.97
11656582--11656613	2	16.0	2	93	0	55	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106