genome.fa.s57.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  58  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10321906--10321931	12	2.2	12	100	0	52	84	7	0	7	0.77
10325004--10325043	19	2.1	19	100	0	80	55	10	10	25	1.64
10325187--10325226	20	2.0	21	85	5	55	50	7	10	32	1.64
10328160--10328194	18	2.1	18	89	10	56	11	20	5	62	1.48
10329196--10329239	21	2.0	22	86	4	63	36	9	2	52	1.46
10330372--10330399	14	2.0	14	100	0	56	42	0	7	50	1.30
10330449--10330493	15	2.8	17	74	16	51	46	0	0	53	1.00
10330488--10330534	18	2.7	17	83	6	58	34	0	6	59	1.23
10330587--10330676	33	2.8	33	81	5	112	55	4	3	36	1.37
10331164--10331199	16	2.1	18	90	10	58	63	0	5	30	1.17
10331516--10331554	21	1.9	20	89	5	60	5	20	2	71	1.17
10332929--10332984	19	3.1	17	82	14	67	57	8	0	33	1.30
10332947--10332990	19	2.3	19	88	4	61	63	4	0	31	1.14
10333055--10333087	15	2.1	16	88	5	50	54	0	0	45	0.99
10332890--10333090	9	21.6	9	66	19	83	53	4	0	40	1.29
10333107--10333144	20	1.9	20	88	0	58	39	5	2	52	1.38
10333180--10333330	9	16.9	9	67	14	62	57	0	3	39	1.15
10333181--10333293	18	6.3	18	69	15	74	54	0	4	40	1.20
10333243--10333300	27	2.1	27	87	6	82	51	0	6	41	1.28
10333260--10333327	26	2.5	28	83	6	79	60	0	4	35	1.17
10333449--10333532	9	9.2	9	72	14	57	72	2	1	23	1.03
10333735--10333863	10	13.6	10	70	19	55	30	5	3	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10333776--10333862	9	9.6	9	72	16	63	33	4	3	58	1.35
10333776--10333862	20	4.8	18	70	16	63	33	4	3	58	1.35
10334144--10334205	9	6.6	9	76	9	52	35	1	8	54	1.39
10334161--10334205	19	2.4	19	81	7	56	37	0	6	55	1.26
10334192--10334248	11	5.5	11	74	17	59	24	1	7	66	1.26
10334838--10334865	14	2.0	14	100	0	56	35	0	0	64	0.94
10334873--10334914	19	2.2	20	83	12	52	47	2	0	50	1.14
10334992--10335121	11	11.7	11	69	18	58	53	0	2	43	1.19
10335004--10335084	27	3.1	25	73	19	76	58	0	2	39	1.12
10334983--10335084	47	2.1	52	81	9	124	57	0	1	40	1.10
10334873--10335157	18	16.9	17	63	23	77	50	2	2	44	1.28
10335125--10335165	18	2.2	19	91	4	66	51	2	0	46	1.14
10335134--10335268	22	6.1	22	68	19	84	48	0	3	48	1.19
10335140--10335259	45	2.6	44	78	13	111	45	0	4	50	1.21
10335225--10335300	35	2.1	37	79	13	88	51	1	1	46	1.17
10335212--10335268	18	2.9	18	72	18	51	50	0	3	45	1.18
10338963--10338993	13	2.3	14	94	5	55	64	0	0	35	0.94
10348592--10348684	27	3.5	26	83	2	114	22	6	35	35	1.80
10362764--10362856	42	2.2	43	81	14	113	39	15	6	38	1.73
10362790--10362871	41	2.0	40	83	9	103	40	12	8	39	1.73
10366930--10366957	14	2.0	14	100	0	56	0	7	0	92	0.37
10369379--10369414	18	2.0	18	88	0	54	55	2	0	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10369505--10369558	28	2.0	28	85	10	76	40	5	3	50	1.44
10371701--10371741	19	2.1	20	90	4	66	24	12	4	58	1.53
10374478--10374553	38	2.1	36	85	9	102	44	5	5	44	1.49
10374648--10374699	4	12.8	4	78	8	52	65	1	1	30	1.14
10374628--10374710	29	2.9	28	85	7	105	59	4	2	33	1.32
10375265--10375326	18	3.3	19	72	6	54	64	9	1	24	1.33
10375401--10375459	27	2.2	26	84	3	73	64	3	0	32	1.10
10375591--10375642	18	2.9	18	75	8	52	30	0	9	59	1.29
10375816--10375856	18	2.2	20	86	8	59	34	7	4	53	1.50
10375941--10375976	18	1.9	19	88	5	56	36	2	2	58	1.27
10375988--10376042	20	2.6	21	80	11	58	29	3	3	63	1.28
10375967--10376041	20	3.7	19	70	18	53	36	2	2	58	1.26
10375967--10376042	19	3.7	20	69	22	50	35	2	2	59	1.25
10376009--10376069	28	2.1	28	82	8	70	37	1	3	57	1.25
10376966--10376991	12	2.2	12	100	0	52	15	15	0	69	1.20
10379290--10379333	22	2.0	22	100	0	88	36	13	13	36	1.85
10380040--10380075	2	18.0	2	100	0	72	50	0	0	50	1.00
10380402--10380478	21	3.7	21	70	8	59	32	10	14	42	1.79
10380909--10380974	3	22.3	3	87	9	100	34	1	0	63	1.04
10380976--10381005	12	2.5	12	94	0	51	0	10	6	83	0.81
10381326--10381369	21	2.1	21	87	4	63	27	4	34	34	1.77
10385201--10385231	16	1.9	16	93	0	53	6	12	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10393294--10393556	89	2.9	88	79	6	278	19	18	15	47	1.83
10393968--10394036	26	2.7	26	86	4	95	24	31	20	23	1.98
10394113--10394140	3	9.3	3	100	0	56	32	0	0	67	0.91
10394143--10394167	8	3.1	8	100	0	50	0	24	0	76	0.80
10394136--10394178	16	2.7	15	79	13	50	4	18	2	74	1.10
10395067--10395108	15	2.6	16	77	7	50	80	0	7	11	0.88
10395733--10395858	22	5.7	22	74	3	92	36	9	9	44	1.70
10395711--10395862	44	3.5	44	76	3	144	36	9	9	44	1.70
10395712--10395873	22	7.4	21	71	8	74	35	9	10	44	1.71
10395944--10395994	21	2.4	22	77	12	61	35	11	9	43	1.75
10396030--10396083	22	2.5	22	81	6	74	29	7	11	51	1.64
10396098--10396200	22	4.8	21	75	10	75	40	10	3	44	1.57
10396108--10396200	21	4.3	21	74	9	71	40	10	4	44	1.59
10396184--10396217	16	2.2	15	94	5	59	32	5	8	52	1.56
10396227--10396418	22	8.8	22	72	7	104	37	10	5	46	1.60
10396227--10396423	67	3.0	66	76	7	204	37	10	5	47	1.60
10396199--10396394	22	8.8	22	71	12	96	37	8	5	48	1.58
10403711--10403835	62	2.0	62	96	0	232	30	13	10	45	1.77
10406729--10406800	35	2.1	35	89	5	110	34	9	19	36	1.85
10410007--10410055	12	3.9	13	78	7	57	44	28	6	20	1.75
10409978--10410053	25	3.0	25	86	0	98	42	26	6	25	1.79
10410046--10410201	80	2.0	80	89	2	242	44	25	7	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10422555--10422583	8	3.6	8	100	0	58	51	0	0	48	1.00
10422649--10422689	20	2.0	21	86	13	59	56	0	0	43	0.99
10426340--10426370	2	15.5	2	93	0	53	45	0	3	51	1.17
10427816--10427857	15	3.1	14	78	21	54	0	26	0	73	0.83
10430296--10430333	14	3.1	12	85	14	51	0	10	0	89	0.49
10430295--10430333	10	3.9	10	86	6	53	0	12	0	87	0.55
10430600--10430635	11	3.0	12	88	12	56	66	0	0	33	0.92
10430600--10430676	24	3.0	24	73	21	68	62	0	0	37	0.96
10430613--10430655	18	2.5	16	79	17	50	62	0	0	37	0.95
10430573--10430671	31	3.3	29	80	12	94	56	1	4	38	1.25
10430610--10430677	11	6.5	11	75	21	58	61	0	0	38	0.96
10430738--10430800	32	2.0	32	90	0	99	52	4	0	42	1.22
10431329--10431393	21	3.2	21	66	16	64	46	3	7	43	1.48
10431327--10431408	40	2.0	40	88	4	121	50	3	8	37	1.51
10431598--10431645	24	2.0	25	83	4	62	56	4	0	39	1.19
10434712--10434750	21	1.9	20	94	5	69	46	5	0	48	1.24
10434712--10434744	11	3.1	11	82	8	50	48	6	0	45	1.27
10440162--10440189	10	2.8	10	100	0	56	28	0	7	64	1.20
10443831--10443870	20	2.0	21	85	5	55	65	2	22	10	1.35
10443880--10443918	20	2.0	20	94	0	69	28	33	20	17	1.96
10445047--10445090	23	1.9	23	81	9	54	47	0	0	52	1.00
10445125--10445176	26	2.0	26	81	3	61	50	0	1	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10445295--10445366	28	2.4	32	77	15	82	51	2	0	45	1.15
10446767--10446800	1	34.0	1	100	0	68	0	0	0	100	0.00
10446939--10446997	20	2.7	21	80	19	68	59	0	0	40	0.97
10446909--10447074	70	2.3	71	82	7	212	54	3	4	37	1.37
10447965--10448016	21	2.5	21	90	6	79	50	0	0	50	1.00
10447965--10448016	22	2.5	22	93	6	90	50	0	0	50	1.00
10447989--10448045	30	1.9	30	85	0	78	52	1	0	45	1.11
10450812--10450877	34	1.9	34	93	0	114	34	6	16	42	1.73
10451962--10451993	15	2.1	15	94	0	55	65	9	0	25	1.22
10452692--10452762	34	2.1	34	89	5	108	23	18	18	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106