genome.fa.s57.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  100  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21186718--21186759	16	2.7	16	75	17	52	78	0	4	16	0.91
21187066--21187106	20	2.1	19	86	13	57	70	0	0	29	0.87
21190436--21190487	26	2.0	26	88	7	79	36	0	0	63	0.95
21190973--21191042	19	3.9	18	78	14	83	57	1	0	41	1.08
21190964--21191049	33	2.5	34	92	3	138	54	2	0	43	1.13
21190969--21191049	18	4.9	15	76	16	63	58	1	0	40	1.06
21197997--21198154	79	2.0	79	86	2	219	20	16	14	48	1.81
21205473--21205506	17	1.9	17	88	5	50	23	0	2	73	0.97
21209593--21210451	429	2.0	432	94	1	1503	38	12	7	41	1.70
21212284--21212343	6	10.5	6	83	7	72	80	1	1	16	0.89
21212284--21212344	23	2.8	20	79	20	68	80	1	1	16	0.88
21212284--21212343	11	5.3	11	81	18	70	80	1	1	16	0.89
21212289--21212346	17	3.4	17	80	17	66	81	0	1	17	0.78
21212299--21212343	23	2.0	23	91	8	74	82	0	2	15	0.77
21212363--21212397	3	11.0	3	88	11	52	62	5	0	31	1.18
21212679--21212721	20	2.0	23	86	13	65	0	32	0	67	0.91
21212763--21212829	31	2.2	31	83	0	80	46	17	14	20	1.84
21213117--21213208	22	4.3	23	71	18	90	58	0	5	35	1.21
21213470--21213665	42	4.7	42	86	5	211	41	16	14	27	1.87
21213653--21213790	41	3.3	40	88	7	188	43	17	10	28	1.82
21214804--21214863	10	5.9	10	75	11	59	3	10	1	85	0.79
21214803--21214860	9	6.0	9	77	15	53	3	10	1	84	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21214813--21214862	22	2.3	21	83	12	66	4	6	2	88	0.70
21225273--21225529	58	4.5	57	80	8	272	37	12	6	43	1.68
21225274--21225538	115	2.3	114	84	5	320	37	12	6	43	1.67
21225274--21225570	58	5.1	55	77	13	228	38	11	6	43	1.67
21225566--21225608	14	3.1	13	83	12	50	81	2	0	16	0.79
21225566--21225611	5	9.4	5	81	13	60	80	2	0	17	0.81
21226507--21226593	30	2.8	31	70	16	88	62	0	6	31	1.22
21226507--21226634	22	5.9	23	71	14	101	64	1	4	28	1.22
21226903--21226974	36	2.0	36	83	0	90	38	18	18	25	1.92
21238242--21238276	18	1.9	18	88	0	52	54	5	14	25	1.62
21238717--21238770	3	18.0	3	92	0	90	31	1	1	64	1.14
21239818--21239860	5	8.8	5	80	14	54	79	4	0	16	0.90
21239832--21239873	19	2.2	20	86	4	59	76	4	4	14	1.12
21239823--21239862	19	2.2	19	90	4	64	80	5	0	15	0.88
21241579--21241654	28	2.7	28	81	4	82	21	19	19	39	1.93
21241764--21241799	18	2.1	17	89	5	54	75	11	0	13	1.06
21241741--21241806	7	9.7	7	77	12	66	69	13	1	15	1.26
21241741--21241810	25	3.0	24	79	8	81	70	12	1	15	1.25
21242069--21242097	14	2.1	14	100	0	58	51	13	27	6	1.66
21244147--21244182	18	2.0	18	89	10	56	83	8	2	5	0.89
21246156--21246188	14	2.3	15	89	5	50	75	3	15	6	1.11
21255297--21255834	49	11.0	48	76	9	462	28	12	19	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21255301--21255834	48	10.9	48	76	9	445	28	12	19	39	1.88
21255297--21255811	97	5.3	98	79	9	462	28	11	19	40	1.87
21256242--21256278	17	2.1	19	90	10	60	78	0	5	16	0.93
21257620--21257662	18	2.4	18	84	7	52	65	2	4	27	1.25
21259605--21259630	2	13.0	2	100	0	52	50	0	0	50	1.00
21259906--21259939	10	3.4	10	91	0	59	11	26	0	61	1.30
21259910--21259942	5	6.8	5	89	3	50	12	24	0	63	1.28
21259906--21259939	15	2.3	15	84	0	50	11	26	0	61	1.30
21262481--21262550	6	11.7	6	87	0	95	17	31	40	11	1.85
21268950--21268984	18	1.9	18	88	11	54	68	2	17	11	1.31
21277582--21277654	22	3.1	24	70	18	64	54	5	8	31	1.53
21286297--21286324	2	14.0	2	100	0	56	0	0	50	50	1.00
21297194--21297220	12	2.2	12	100	0	54	25	14	0	59	1.36
21302568--21302632	30	2.5	24	72	25	67	46	0	0	53	1.00
21305388--21305482	48	2.0	48	91	0	154	38	15	18	26	1.91
21307765--21307841	41	1.9	40	86	5	111	44	11	11	32	1.77
21311734--21311850	58	2.0	58	96	0	216	34	17	20	28	1.95
21312215--21312255	22	1.9	22	85	5	57	7	7	9	75	1.18
21313084--21313121	2	19.0	2	88	0	58	44	0	0	55	0.99
21313327--21313384	2	28.0	2	80	13	55	44	5	3	46	1.42
21313943--21313969	3	9.0	3	100	0	54	33	0	33	33	1.58
21314512--21314585	30	2.5	30	81	0	85	48	2	14	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21315462--21315507	23	2.0	23	86	0	65	41	0	2	56	1.11
21316136--21316174	20	2.0	20	94	0	69	51	0	12	35	1.40
21317061--21317114	27	2.0	27	85	10	74	61	1	3	33	1.25
21333271--21333354	39	2.2	39	93	2	143	45	13	19	22	1.84
21334383--21334409	3	9.0	3	100	0	54	33	0	0	66	0.92
21335338--21335376	19	2.0	20	90	5	62	28	15	2	53	1.55
21354186--21354250	26	2.6	24	78	7	67	41	1	0	56	1.08
21354219--21354268	20	2.5	19	84	15	66	48	0	0	52	1.00
21354219--21354265	21	2.3	21	89	7	71	48	0	0	51	1.00
21356767--21356824	25	2.3	24	73	23	57	44	1	12	41	1.51
21359850--21359913	6	10.7	6	87	0	92	23	0	45	31	1.53
21359850--21359913	24	2.7	24	95	0	110	23	0	45	31	1.53
21360284--21360347	18	3.6	18	76	0	65	37	28	3	31	1.73
21360266--21360360	36	2.6	36	88	0	118	36	31	3	28	1.73
21360298--21360360	18	3.5	18	75	0	72	38	34	1	25	1.66
21364269--21364316	25	1.9	25	83	8	62	58	0	0	41	0.98
21364415--21364446	15	2.1	15	94	0	55	78	0	21	0	0.76
21364567--21364601	16	2.1	16	89	5	52	34	2	0	62	1.10
21368099--21368153	24	2.4	24	81	6	60	36	7	1	54	1.39
21370470--21370511	16	2.8	16	89	7	61	45	0	0	54	0.99
21370496--21370546	21	2.5	20	79	20	68	49	3	1	45	1.32
21371513--21371661	75	2.0	75	94	0	262	31	20	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21373539--21373578	21	2.0	21	90	5	64	57	0	5	37	1.21
21387966--21388023	21	2.8	21	76	7	55	43	0	3	53	1.17
21389807--21389881	12	6.2	12	75	14	57	44	0	0	56	0.99
21389803--21389864	31	2.0	31	84	6	81	45	0	0	54	0.99
21389875--21389914	21	2.0	20	90	5	62	50	2	0	47	1.14
21400513--21400581	27	2.6	29	80	13	76	56	0	2	40	1.14
21400540--21400568	11	2.5	12	94	5	51	55	0	0	44	0.99
21409352--21409381	15	1.9	16	93	6	53	80	6	0	13	0.91
21409416--21409497	19	4.2	19	74	11	69	65	10	0	23	1.24
21409517--21409559	20	2.1	20	86	4	59	67	6	2	23	1.27
21409555--21409620	26	2.5	26	83	9	80	69	3	6	21	1.24
21410090--21410147	20	2.8	20	81	2	62	17	3	6	72	1.21
21410069--21410138	21	3.4	21	72	18	67	15	2	5	75	1.11
21412137--21412166	7	4.3	7	91	0	51	83	0	3	13	0.77
21416689--21416746	22	2.6	21	83	10	62	62	3	0	34	1.12
21418239--21418283	19	2.5	18	82	7	56	46	2	0	51	1.13
21419451--21419491	14	3.2	13	80	12	50	51	0	0	48	1.00
21419451--21419501	26	2.0	26	88	7	77	49	0	0	50	1.00
21419461--21419520	26	2.3	26	82	0	66	46	5	1	46	1.34
21419545--21419581	19	1.9	19	89	10	58	67	5	2	24	1.25
21436061--21436089	2	14.5	2	100	0	58	51	0	0	48	1.00
21437702--21437753	27	1.9	27	84	7	70	25	5	13	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21437706--21437747	22	1.9	22	100	0	84	23	4	16	54	1.61
21437872--21437948	33	2.4	32	76	20	79	40	0	3	55	1.18
21438673--21438721	25	2.0	24	84	11	64	24	2	6	67	1.24
21441735--21441769	2	17.5	2	93	0	61	48	2	0	48	1.16
21442258--21442322	34	1.9	34	93	6	114	21	0	6	72	1.06
21442557--21443169	313	2.0	306	89	5	952	31	11	15	41	1.83
21444692--21444751	29	2.1	29	81	12	70	51	1	1	45	1.21
21445182--21445224	18	2.4	19	84	11	63	30	0	0	69	0.88
21445479--21445525	17	2.9	16	84	6	58	72	2	17	8	1.19
21445729--21445760	3	10.7	3	93	0	55	62	3	0	34	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106