genome.fa.s57.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  83  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16910985--16911026	18	2.5	17	76	7	50	57	0	0	42	0.99
16911055--16911128	12	6.2	12	75	12	62	45	0	0	54	1.00
16911068--16911110	13	3.2	14	80	12	54	51	0	0	48	1.00
16911756--16911802	15	3.2	15	72	3	51	40	0	0	59	0.97
16911765--16911817	21	2.4	21	93	6	88	47	0	0	52	1.00
16911765--16911823	21	2.7	21	89	7	73	45	0	0	54	0.99
16912295--16912403	34	3.1	34	76	12	112	45	13	4	35	1.64
16915333--16915369	17	2.2	18	86	13	53	51	0	2	45	1.15
16916051--16916083	16	2.0	17	88	5	50	54	3	0	42	1.15
16916511--16916545	15	2.3	15	100	0	70	40	22	0	37	1.55
16917900--16918398	268	1.9	269	92	1	840	42	3	7	46	1.49
16919246--16919300	27	2.0	25	83	16	65	43	1	1	52	1.22
16920084--16920114	2	15.5	2	100	0	62	51	0	0	48	1.00
16922852--16922890	8	4.8	8	84	6	51	15	2	0	82	0.79
16922858--16922889	17	1.9	17	93	6	57	15	3	0	81	0.82
16923972--16924005	12	2.9	12	95	4	61	70	11	0	17	1.16
16923972--16924005	18	1.9	17	94	5	59	70	11	0	17	1.16
16924245--16924380	42	3.2	42	84	2	166	51	11	13	23	1.73
16924753--16924793	21	2.0	20	95	4	73	36	9	9	43	1.71
16924758--16924800	21	2.0	21	90	0	68	37	13	9	39	1.78
16925102--16925249	56	2.9	51	81	10	151	23	18	11	45	1.82
16926800--16926855	23	2.7	20	80	17	69	48	19	5	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16926813--16926856	23	2.0	22	95	4	79	50	20	4	25	1.67
16930266--16930621	195	1.8	195	81	10	449	36	9	7	46	1.64
16940513--16940538	3	8.7	3	100	0	52	30	0	0	69	0.89
16941262--16941335	24	3.1	23	82	5	69	45	0	5	48	1.25
16941294--16941348	24	2.3	24	87	6	85	45	0	9	45	1.35
16950892--16950941	25	2.0	26	96	4	93	4	30	14	52	1.59
16953282--16953306	1	25.0	1	100	0	50	0	0	0	100	0.00
16958215--16958256	19	2.2	19	83	8	50	52	2	0	45	1.13
16962040--16962083	14	2.9	14	81	15	52	65	0	2	31	1.05
16961885--16962362	210	2.3	209	77	7	495	53	6	9	30	1.58
16962559--16962590	16	2.0	16	93	0	55	53	0	0	46	1.00
16962991--16963044	19	2.9	19	70	22	51	61	0	7	31	1.24
16963223--16963269	19	2.6	18	83	12	60	65	4	2	27	1.22
16963223--16963269	18	2.5	19	86	10	62	65	4	2	27	1.22
16963449--16963520	20	3.5	21	76	14	69	55	4	2	37	1.34
16963896--16963930	16	2.2	16	89	0	52	54	0	11	34	1.37
16961842--16964683	931	3.0	920	76	9	2311	51	5	9	33	1.58
16964252--16964698	218	2.1	218	79	4	481	50	6	9	34	1.59
16965443--16965496	17	3.1	17	75	2	54	37	1	1	59	1.19
16965882--16965935	25	2.2	25	93	0	90	51	0	9	38	1.34
16965896--16965946	24	2.1	25	85	3	68	54	0	7	37	1.29
16967001--16967132	61	2.2	60	86	5	176	43	5	6	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16967001--16967230	60	3.8	59	73	14	166	43	4	7	44	1.53
16979078--16979140	31	2.0	31	87	0	90	42	3	7	46	1.49
16979426--16979458	9	3.8	9	84	8	50	48	0	0	51	1.00
16983776--16983800	2	12.5	2	100	0	50	48	0	0	52	1.00
16988033--16988086	28	1.9	28	84	0	72	57	5	11	25	1.55
16989218--16989278	21	2.8	21	82	7	59	47	0	24	27	1.52
16991598--16991625	2	14.0	2	100	0	56	0	50	0	50	1.00
16992406--16992488	32	2.6	31	76	14	78	50	10	2	36	1.50
16997488--16997530	20	2.2	20	86	0	59	76	2	0	20	0.89
16997500--16997533	17	2.1	16	88	5	50	85	0	0	14	0.60
16997500--16997533	8	4.1	8	85	7	50	85	0	0	14	0.60
16998423--16998483	4	16.0	4	76	10	65	70	1	3	24	1.11
16998382--16998470	35	2.7	32	81	8	97	67	5	4	22	1.30
16998703--16998928	44	5.1	43	77	8	188	46	18	11	23	1.81
16998705--16998868	44	3.8	43	80	9	190	45	19	11	23	1.83
16998691--16998877	86	2.1	89	82	7	229	48	18	10	21	1.78
16998691--16998918	86	2.6	87	79	9	212	48	17	10	23	1.79
17010755--17010804	26	1.9	25	84	8	64	40	0	6	54	1.25
17011950--17012013	4	17.0	4	77	9	64	70	1	3	25	1.11
17012427--17012491	20	3.3	20	91	2	96	49	7	9	33	1.63
17012427--17012605	20	8.5	20	73	19	82	51	14	7	26	1.68
17012463--17012582	45	2.7	43	82	8	152	50	18	7	23	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17012463--17012567	44	2.4	43	85	6	147	52	19	6	21	1.68
17012463--17012582	44	2.7	43	81	13	145	50	18	7	23	1.72
17012553--17012723	20	8.9	20	74	15	91	52	10	7	29	1.63
17012607--17012778	37	4.6	37	76	11	172	52	10	9	27	1.66
17012631--17012775	18	7.9	17	69	21	98	54	9	8	27	1.61
17012579--17012778	111	1.8	111	94	0	355	53	10	8	28	1.64
17013030--17013068	2	19.5	2	94	0	69	48	0	2	48	1.15
17013359--17013420	32	1.9	32	100	0	124	25	8	17	48	1.75
17013709--17013738	7	4.3	7	91	0	51	13	0	3	83	0.77
17013703--17013738	14	2.6	14	91	4	56	11	2	2	83	0.86
17020339--17020374	2	18.0	2	100	0	72	50	0	0	50	1.00
17020945--17020986	3	14.0	3	100	0	84	66	0	0	33	0.92
17022963--17022987	2	12.5	2	100	0	50	52	0	0	48	1.00
17023695--17023741	21	2.1	21	84	7	58	72	2	0	25	0.96
17023763--17023806	21	2.0	22	91	4	72	65	2	2	29	1.16
17026131--17026195	20	3.3	20	91	2	96	49	7	9	33	1.63
17026131--17026309	20	8.5	20	72	21	82	51	14	7	26	1.68
17026167--17026275	44	2.5	42	84	10	148	52	18	6	22	1.68
17026255--17026297	22	2.0	22	95	0	77	53	11	6	27	1.63
17026336--17026480	18	7.9	17	69	21	98	54	9	8	27	1.61
17026283--17026483	111	1.8	111	92	2	341	52	10	8	27	1.65
17026147--17026420	20	13.6	20	67	22	80	52	13	7	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17026311--17026483	37	4.6	37	75	11	156	52	10	9	27	1.67
17026735--17026768	2	17.5	2	87	6	52	47	0	2	50	1.16
17027452--17027488	14	2.8	13	88	8	56	70	8	0	21	1.13
17027453--17027493	14	3.0	14	80	16	50	68	7	0	24	1.15
17031086--17031112	2	13.5	2	100	0	54	48	0	0	51	1.00
17034069--17034106	2	19.0	2	100	0	76	50	0	0	50	1.00
17034676--17034723	3	16.0	3	100	0	96	66	0	0	33	0.92
17037486--17037529	21	2.0	22	91	4	72	65	2	2	29	1.16
17039908--17040139	20	10.8	20	69	18	110	52	9	5	32	1.57
17039908--17040106	41	4.6	41	74	14	154	52	10	6	31	1.59
17039989--17040068	32	2.5	32	87	0	115	55	8	6	30	1.55
17039993--17040045	16	3.3	16	73	19	56	60	7	3	28	1.41
17040050--17040207	24	6.9	24	74	15	136	53	8	3	33	1.50
17040050--17040188	47	3.0	45	81	11	147	53	8	4	33	1.51
17040119--17040207	21	4.1	21	72	13	81	56	8	1	33	1.38
17040865--17040894	13	2.3	13	100	0	60	80	0	0	20	0.72
17041150--17041336	42	4.4	42	79	7	209	36	19	14	29	1.92
17041162--17041334	85	2.0	84	83	5	215	37	18	15	28	1.91
17041284--17041392	56	1.9	57	88	5	168	34	26	12	25	1.92
17044860--17044895	17	2.1	17	89	0	54	30	11	11	47	1.74
17047601--17047630	15	2.1	15	93	6	53	20	3	13	63	1.43
17048774--17048852	25	3.1	26	75	14	76	44	16	10	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17048778--17048855	13	6.2	12	71	15	59	42	16	10	30	1.82
17049017--17049056	20	2.0	20	90	0	62	45	12	5	37	1.64
17049272--17049370	32	3.1	32	92	0	162	55	10	6	28	1.57
17049334--17049375	20	2.1	20	90	0	66	54	9	4	30	1.53
17049354--17049494	24	6.0	24	75	13	141	54	9	3	32	1.49
17049426--17049494	21	3.1	21	83	10	84	56	10	1	31	1.41
17049474--17049537	17	3.6	17	77	10	67	46	10	10	31	1.74
17061946--17061975	12	2.6	11	90	10	51	90	6	3	0	0.56
17062574--17062725	18	8.2	19	68	15	77	62	1	1	34	1.15
17062607--17062703	9	10.4	9	74	18	74	61	1	1	36	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106