genome.fa.s57.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  4  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509255--509495	22	11.1	22	86	6	181	37	9	14	38	1.79
509262--509496	44	5.4	43	81	8	262	37	8	15	38	1.78
509261--509496	86	2.7	87	83	5	282	37	8	15	38	1.79
509976--510014	16	2.4	17	91	4	62	28	5	20	46	1.72
510120--510160	18	2.3	18	82	0	55	36	4	19	39	1.73
510156--510190	15	2.3	15	90	0	52	31	11	14	42	1.81
510241--510325	44	2.0	42	86	4	116	24	14	18	42	1.88
513679--513708	15	2.1	15	93	6	53	13	6	3	76	1.11
514030--514125	46	2.1	46	86	0	129	43	13	12	30	1.81
515013--515052	20	2.0	20	90	0	62	30	5	15	50	1.65
515524--515574	11	4.4	12	73	9	52	9	1	9	78	1.04
515526--515578	22	2.4	23	84	15	76	9	1	11	77	1.07
515549--515617	22	3.0	22	78	16	61	23	0	5	71	1.08
515738--515781	21	2.1	21	95	0	79	36	4	9	50	1.55
515813--515853	20	2.0	21	90	4	66	36	7	7	48	1.59
515985--516086	38	2.7	38	77	11	102	44	12	12	30	1.80
518058--518101	23	1.9	23	100	0	88	47	11	13	27	1.77
521673--521837	46	3.6	43	73	10	123	35	9	14	41	1.78
521763--521823	24	2.6	24	82	5	72	34	8	16	40	1.78
522093--522127	18	2.0	18	88	5	54	31	5	11	51	1.61
522097--522273	17	10.2	18	69	12	75	32	11	14	41	1.82
523978--524044	21	3.3	20	80	14	75	10	1	8	79	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523965--524044	13	6.2	13	72	13	67	8	2	7	81	0.96
524036--524087	12	3.8	13	80	12	52	34	0	0	65	0.93
524216--524281	28	2.2	29	84	7	80	33	4	4	57	1.39
524230--524276	15	3.3	15	76	11	53	31	6	4	57	1.43
524256--524295	20	2.0	21	90	5	64	35	7	5	52	1.51
524281--524325	14	3.1	14	80	3	54	33	8	8	48	1.65
526104--526147	22	2.0	21	82	4	52	54	6	2	36	1.40
540809--540850	15	2.8	15	82	10	50	30	0	9	59	1.29
540967--541008	17	2.4	18	88	4	68	64	9	4	21	1.42
540998--541032	6	5.8	6	89	0	52	68	14	0	17	1.21
541195--541352	3	54.7	3	80	9	123	31	5	3	60	1.36
541273--541308	11	3.3	11	84	0	54	27	0	11	61	1.30
541268--541320	22	2.3	23	93	3	90	26	0	7	66	1.18
542174--542211	11	3.5	11	92	7	69	10	0	13	76	1.02
542174--542216	11	3.9	11	81	9	52	9	0	13	76	1.01
552795--552828	11	3.3	11	92	8	54	20	0	0	79	0.73
552843--552878	18	2.0	18	88	0	54	69	5	11	13	1.34
553491--553519	14	2.1	14	93	6	51	6	0	10	82	0.83
558394--558428	11	3.2	11	100	0	70	34	0	17	48	1.47
565602--565631	15	2.0	15	93	0	51	43	0	0	56	0.99
567304--567328	2	12.5	2	100	0	50	52	0	0	48	1.00
567503--567541	20	2.0	20	95	5	71	5	12	0	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573984--574055	26	2.8	26	87	4	83	51	9	5	33	1.58
574005--574059	26	2.1	26	100	0	110	52	7	7	32	1.56
574892--575008	49	2.5	49	82	9	136	60	14	2	22	1.46
574912--575020	24	4.5	24	77	12	123	62	11	1	23	1.39
574983--575024	12	3.5	12	76	23	52	69	4	0	26	1.08
575117--575191	7	10.6	7	84	7	71	78	6	1	13	1.00
575117--575202	14	5.9	15	81	9	63	79	5	2	12	1.01
575123--575202	23	3.6	23	75	6	67	78	6	2	12	1.03
575594--575634	20	2.0	20	90	0	64	53	12	0	34	1.38
575910--576018	44	2.4	46	82	13	138	39	11	11	38	1.76
576120--576338	41	5.2	40	74	11	136	44	13	12	29	1.81
576242--576333	45	2.0	46	81	6	107	50	13	11	25	1.75
577455--577511	26	2.2	24	82	14	62	17	12	0	70	1.17
581022--581067	22	2.1	22	95	0	83	28	13	23	34	1.92
581321--581375	24	2.2	26	84	12	71	54	14	3	27	1.57
581339--581375	13	2.8	14	84	12	51	56	10	5	27	1.55
581456--581552	24	4.0	24	76	10	90	59	9	6	24	1.51
581612--581692	22	3.8	20	76	18	76	79	3	3	13	1.01
581630--581672	18	2.4	18	85	11	61	83	2	2	11	0.83
581612--581691	14	5.7	14	71	21	60	80	2	3	13	0.96
581632--581691	23	2.5	24	78	13	61	81	1	3	13	0.89
581632--581691	7	8.6	7	73	14	52	81	1	3	13	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582553--582591	20	2.1	19	90	9	62	38	5	10	46	1.60
582547--582587	20	2.0	21	95	4	75	34	4	12	48	1.62
582553--582600	20	2.3	20	85	7	60	43	8	8	39	1.65
583675--583717	15	2.8	15	82	3	50	46	4	2	46	1.36
583735--583760	11	2.4	11	100	0	52	34	0	0	65	0.93
584969--584998	2	15.0	2	100	0	60	50	0	0	50	1.00
587716--587753	20	2.0	20	89	5	60	71	2	7	18	1.23
587717--587760	19	2.2	20	84	4	54	75	2	6	15	1.12
587793--587833	5	8.2	5	86	13	50	75	0	2	21	0.92
596033--596067	15	2.2	17	90	10	56	45	0	5	48	1.26
596921--596958	19	2.0	19	100	0	76	31	10	21	36	1.87
597361--597401	17	2.5	17	81	18	52	12	19	12	56	1.67
602304--602359	20	2.8	20	78	5	51	33	3	1	60	1.24
602588--602839	128	2.0	128	94	0	441	35	7	8	48	1.61
602620--602882	128	2.1	126	82	5	305	39	6	9	44	1.62
604237--604265	14	2.0	15	93	6	51	48	0	0	51	1.00
604255--604316	19	3.2	18	78	14	70	54	0	1	43	1.09
604247--604318	20	3.6	20	78	14	69	55	0	1	43	1.08
604262--604338	19	3.9	20	74	16	70	54	1	2	41	1.22
604245--604325	39	2.1	38	86	6	110	55	1	1	41	1.15
604507--604541	14	2.5	14	90	0	52	11	14	0	74	1.08
609607--609649	20	2.2	20	100	0	86	25	20	9	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618381--618417	17	2.3	17	86	9	51	67	8	0	24	1.17
620054--620083	10	3.1	10	95	4	53	36	0	0	63	0.95
622417--622450	2	18.0	2	88	11	54	50	0	0	50	1.00
626475--626537	31	2.1	30	91	5	101	38	9	14	38	1.78
629311--629352	21	2.0	22	85	4	59	61	4	4	28	1.36
632122--632310	41	4.6	43	76	9	162	42	2	3	50	1.34
632122--632310	21	9.2	21	76	7	174	42	2	3	50	1.34
632225--632310	20	4.2	20	76	5	77	46	3	1	48	1.26
633091--633123	2	16.5	2	100	0	66	51	0	0	48	1.00
633274--633321	21	2.2	22	77	3	53	72	10	12	4	1.24
634350--634393	18	2.5	17	82	10	52	75	2	0	22	0.92
634616--634650	14	2.6	13	90	4	52	71	0	0	28	0.86
634614--634652	18	2.2	18	90	0	60	71	0	0	28	0.86
635344--635390	23	2.0	23	100	0	94	34	31	8	25	1.86
637907--637948	21	2.0	21	100	0	84	23	9	9	57	1.60
637938--637972	12	2.8	13	86	8	54	22	0	0	77	0.78
640584--640630	6	7.7	6	77	13	51	21	0	0	78	0.75
643984--644009	2	13.0	2	100	0	52	50	0	0	50	1.00
657415--657450	10	3.6	10	96	0	63	55	0	0	44	0.99
659049--659078	7	4.3	7	100	0	60	13	0	0	86	0.57
665776--665823	25	2.0	25	84	8	64	39	2	0	58	1.10
665909--665990	37	2.2	37	84	0	101	48	0	3	47	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666063--666272	71	2.9	70	80	6	242	43	5	3	47	1.43
666484--666547	32	2.0	32	90	6	103	40	4	0	54	1.21
666936--666979	15	2.8	16	79	10	54	63	0	0	36	0.95
666936--666979	8	5.5	8	81	8	54	63	0	0	36	0.95
673560--673597	14	2.6	15	83	8	51	78	5	5	10	1.06
675124--675166	16	2.5	17	82	17	54	48	2	2	46	1.27
675500--675557	26	2.2	26	84	6	73	18	12	3	65	1.39
676538--676610	36	2.0	36	86	0	101	23	8	17	50	1.73
677032--677065	11	3.1	11	86	0	50	70	11	2	14	1.27
678919--678948	6	5.0	6	91	0	51	33	3	0	63	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106