genome.fa.s57.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  72  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13447120--13447169	11	4.2	12	82	12	68	32	2	0	66	1.03
13447120--13447166	24	2.0	24	95	0	85	31	2	0	65	1.04
13453470--13453504	7	4.6	8	92	7	56	22	0	0	77	0.78
13456404--13456445	19	2.2	19	95	0	75	28	0	4	66	1.12
13456400--13456447	15	3.3	14	82	8	60	31	0	4	64	1.12
13456516--13456558	18	2.5	19	85	14	58	44	0	0	55	0.99
13458731--13458762	2	15.5	2	93	6	55	46	0	3	50	1.17
13462000--13462031	16	2.1	15	94	5	55	75	0	0	25	0.81
13465328--13465484	66	2.4	66	81	0	170	45	15	17	21	1.85
13465366--13465944	132	4.3	130	71	8	371	47	12	18	20	1.81
13465594--13465744	66	2.3	66	82	5	171	49	8	18	23	1.75
13465593--13465700	34	3.2	32	68	21	78	51	8	17	22	1.71
13467387--13467424	16	2.4	16	82	8	51	5	5	2	86	0.76
13472866--13472896	11	2.7	12	90	10	55	29	0	0	70	0.87
13472956--13472981	3	8.7	3	100	0	52	69	0	0	30	0.89
13472977--13473087	48	2.3	49	86	9	147	72	2	5	19	1.17
13473002--13473099	25	4.0	26	73	16	75	73	2	7	17	1.15
13474674--13474698	13	1.9	13	100	0	50	88	12	0	0	0.53
13475274--13475304	2	15.5	2	100	0	62	51	0	48	0	1.00
13475593--13475668	29	2.7	27	86	8	98	46	1	1	51	1.17
13475643--13475693	11	4.9	10	75	15	50	49	1	0	49	1.12
13479911--13479960	15	3.2	16	80	11	59	22	0	0	78	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13480286--13480325	17	2.3	18	86	4	55	5	5	7	82	0.94
13485282--13485354	29	2.6	28	82	4	92	41	8	15	35	1.77
13487707--13487767	28	2.2	28	100	0	122	29	9	19	40	1.84
13489215--13489245	12	2.5	13	89	10	55	58	0	0	41	0.98
13496595--13496619	2	12.5	2	100	0	50	48	0	52	0	1.00
13498947--13498990	5	9.0	5	80	14	56	56	0	0	43	0.99
13498947--13498986	14	2.8	14	92	3	62	57	0	0	42	0.98
13498981--13499033	28	1.9	27	88	3	79	35	0	0	64	0.94
13499312--13499354	23	1.9	22	85	4	59	51	0	2	46	1.13
13500491--13500534	16	2.7	16	78	3	52	15	11	0	72	1.11
13527136--13527171	2	18.0	2	100	0	72	50	0	0	50	1.00
13532660--13532711	21	2.5	21	90	6	79	50	0	0	50	1.00
13532660--13532711	22	2.5	22	93	6	90	50	0	0	50	1.00
13532696--13532735	16	2.7	14	88	7	53	55	0	0	45	0.99
13532701--13532737	8	4.6	8	86	0	56	56	0	0	43	0.99
13532698--13532745	14	3.3	14	80	11	51	60	0	0	39	0.97
13532734--13532774	14	2.6	17	74	22	52	58	0	0	41	0.98
13533265--13533319	25	2.2	25	84	9	76	49	7	0	43	1.30
13535541--13535572	2	16.0	2	93	0	55	0	53	0	46	1.00
13536103--13536151	19	2.5	21	78	18	61	30	0	0	69	0.89
13536265--13536295	13	2.4	13	94	0	53	41	0	0	58	0.98
13536692--13536764	29	2.5	29	84	8	87	35	1	1	61	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13537605--13537647	16	2.5	17	81	14	52	48	0	2	48	1.14
13537618--13537656	15	2.5	16	91	4	62	48	2	0	48	1.15
13539089--13539185	42	2.4	42	77	6	103	46	1	4	48	1.28
13544883--13545096	76	2.8	75	82	8	218	50	2	11	35	1.54
13544925--13545096	78	2.2	77	84	7	215	48	2	11	37	1.55
13552680--13552712	3	11.0	3	100	0	66	66	0	0	33	0.92
13555381--13555439	11	5.4	11	73	15	50	45	1	0	52	1.10
13559111--13559169	23	2.6	23	82	12	61	47	0	1	50	1.11
13559141--13559213	18	4.2	17	74	17	62	50	0	0	49	1.00
13561145--13561180	18	1.9	18	88	5	54	69	0	0	30	0.89
13561721--13561764	14	3.4	13	87	6	63	31	0	2	65	1.05
13561721--13561764	6	6.8	6	80	14	52	31	0	2	65	1.05
13563537--13563770	126	1.9	126	79	1	272	29	22	17	31	1.96
13570675--13570711	2	18.5	2	100	0	74	51	0	0	48	1.00
13570711--13570735	2	12.5	2	100	0	50	52	0	48	0	1.00
13576019--13576107	36	2.5	36	86	0	115	39	2	42	15	1.60
13576031--13576095	18	3.6	18	82	0	85	35	1	44	18	1.59
13575998--13576098	6	16.3	6	77	10	69	36	1	42	18	1.62
13576498--13576581	41	2.0	42	93	2	143	20	10	15	53	1.71
13585289--13585333	22	2.1	21	84	12	56	33	0	2	64	1.06
13586191--13586248	29	2.0	29	89	0	89	63	0	0	36	0.94
13590932--13590964	18	1.9	17	88	11	50	48	6	21	24	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13593165--13593220	16	3.7	15	74	6	51	82	1	8	7	0.92
13594328--13594448	62	1.9	63	81	9	149	42	7	8	41	1.63
13597205--13597324	57	2.1	58	84	6	156	49	2	9	39	1.48
13603186--13603259	31	2.4	31	77	11	80	52	1	4	41	1.28
13603352--13603381	15	2.0	15	93	0	51	63	6	0	30	1.20
13608034--13608064	15	2.1	15	93	0	53	41	22	12	22	1.88
13613936--13613989	28	1.9	28	85	7	74	59	3	0	37	1.15
13613966--13614013	20	2.4	20	75	6	53	60	2	0	37	1.09
13614615--13614693	19	4.1	18	72	13	61	58	2	1	37	1.20
13614638--13614702	21	3.1	22	80	8	75	56	3	0	40	1.15
13615894--13615918	3	8.3	3	100	0	50	0	36	0	64	0.94
13618633--13618979	173	2.0	170	87	1	487	40	6	12	40	1.69
13619186--13619216	16	1.9	16	93	0	53	51	0	0	48	1.00
13619185--13619223	16	2.4	16	82	4	51	46	0	0	53	1.00
13624630--13624826	98	2.0	99	90	1	315	26	15	19	38	1.92
13628217--13628265	15	3.3	15	77	2	55	61	2	0	36	1.08
13629217--13629259	20	2.1	20	82	4	50	74	9	4	11	1.20
13632816--13632840	13	1.9	13	100	0	50	40	16	16	28	1.89
13637394--13637458	21	3.2	20	76	10	60	7	20	1	70	1.19
13660649--13660711	19	3.4	17	74	20	54	58	4	0	36	1.19
13660775--13660856	28	3.1	25	77	16	85	41	4	1	52	1.31
13662332--13662389	24	2.5	23	80	8	64	55	1	0	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13665962--13666000	20	2.0	20	89	0	60	23	17	12	46	1.83
13667572--13667610	2	19.5	2	100	0	78	51	0	0	48	1.00
13680687--13680772	21	4.3	21	69	18	58	41	2	6	48	1.43
13680720--13680755	17	2.1	17	89	0	54	36	0	8	55	1.30
13680738--13680936	21	9.4	21	71	1	92	35	7	9	47	1.65
13680776--13680905	42	3.1	42	75	0	134	37	9	9	43	1.69
13680739--13680905	84	2.0	84	83	2	210	37	8	9	44	1.69
13680880--13680932	22	2.5	21	84	6	70	32	1	7	58	1.37
13681331--13681386	22	2.5	22	88	5	78	41	12	5	41	1.66
13681378--13681452	39	1.9	39	83	5	98	38	13	9	38	1.77
13681521--13681614	22	4.3	22	74	8	66	39	7	5	47	1.54
13681533--13681625	22	4.2	22	79	8	82	36	5	6	51	1.51
13681587--13681638	22	2.4	22	86	0	68	32	9	3	53	1.51
13681700--13681785	43	2.0	44	88	2	129	38	8	5	47	1.57
13681709--13681980	22	12.3	22	70	11	117	36	8	4	50	1.54
13681925--13681980	11	5.1	11	70	8	51	39	7	0	53	1.28
13682528--13682589	22	2.8	23	67	16	58	35	8	11	45	1.70
13682614--13682684	22	3.2	22	76	4	72	29	7	2	60	1.37
13682602--13682706	44	2.4	44	80	6	115	34	8	3	53	1.50
13682680--13682771	22	4.2	20	74	12	60	38	11	5	44	1.64
13682747--13682837	22	4.2	20	75	18	69	36	6	7	49	1.58
13682877--13682931	22	2.5	22	85	5	67	40	3	5	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13682889--13682953	22	3.0	22	86	0	85	35	4	6	53	1.46
13682891--13682944	11	4.9	11	79	0	63	35	1	5	57	1.33
13682889--13682953	11	5.9	11	75	0	58	35	4	6	53	1.46
13682994--13683082	44	2.0	44	84	0	115	33	6	7	51	1.57
13683019--13683083	22	3.0	21	71	10	60	36	4	6	52	1.47
13683051--13683173	65	1.9	66	81	8	153	37	12	5	44	1.66
13687442--13687483	21	2.0	22	85	4	59	73	2	9	14	1.18
13696944--13697028	30	3.0	30	78	14	74	51	4	4	38	1.44
13698987--13699038	20	2.6	21	93	6	90	50	0	0	50	1.00
13699938--13700023	33	2.7	32	78	7	102	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106