genome.fa.s57.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  55  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9661538--9661570	2	16.5	2	100	0	66	51	0	48	0	1.00
9665559--9665606	15	3.4	14	77	11	53	2	14	4	79	0.98
9665757--9665838	42	2.0	42	92	0	137	36	14	6	42	1.71
9672955--9673017	25	2.7	24	85	9	85	66	1	4	26	1.20
9680112--9680145	18	1.9	18	88	5	52	44	5	0	50	1.26
9680136--9680170	17	2.1	17	89	10	54	77	0	2	20	0.90
9680198--9680238	3	13.0	3	85	10	55	63	2	0	34	1.08
9682871--9682921	25	2.0	26	85	11	70	37	19	5	37	1.76
9682889--9683016	62	2.1	62	83	5	161	43	10	15	30	1.80
9685459--9685522	19	3.4	19	70	23	62	54	12	4	28	1.57
9685497--9685557	22	2.6	24	89	10	108	52	13	4	29	1.61
9685525--9685644	35	3.4	35	88	5	163	53	14	5	26	1.63
9685660--9685698	18	2.2	18	90	0	60	48	12	5	33	1.63
9685750--9685789	12	3.2	12	79	6	53	60	5	0	35	1.19
9685702--9685840	21	5.6	25	72	21	98	56	10	2	30	1.46
9685688--9685812	46	2.7	47	85	8	150	57	8	1	32	1.39
9685880--9685926	17	2.9	17	90	6	71	51	12	6	29	1.65
9686389--9686435	14	3.4	14	85	8	53	72	8	0	19	1.10
9687692--9687760	36	1.9	36	90	0	111	62	8	13	15	1.54
9690188--9690262	32	2.3	33	81	9	82	56	9	9	25	1.61
9703801--9703865	27	2.4	28	80	10	73	46	1	3	49	1.27
9703852--9703901	22	2.1	24	82	17	61	50	2	0	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9721765--9721893	22	5.7	23	72	7	86	54	4	3	37	1.40
9721819--9721924	44	2.4	43	80	16	112	53	5	4	35	1.45
9721858--9721928	22	3.2	22	79	0	79	52	4	4	39	1.41
9736839--9736904	27	2.4	28	85	10	82	50	1	0	48	1.10
9738638--9738662	7	3.6	7	100	0	50	0	12	0	88	0.53
9739355--9739412	30	1.9	30	85	0	80	48	0	1	50	1.11
9739946--9739970	10	2.5	10	100	0	50	32	8	0	60	1.26
9740245--9740852	304	2.0	301	83	7	761	31	8	13	46	1.74
9740915--9740947	16	2.0	17	88	5	50	45	3	0	51	1.16
9742068--9742126	14	4.0	14	79	16	57	32	1	0	66	1.02
9743254--9743293	10	4.1	10	87	3	55	52	2	25	20	1.59
9743256--9743293	20	1.9	20	94	0	67	55	2	26	15	1.54
9745003--9745043	21	2.0	21	85	9	57	75	0	19	4	0.98
9747173--9747268	44	2.2	42	76	16	99	33	7	13	45	1.71
9747281--9747366	22	3.9	21	72	10	73	40	3	15	40	1.64
9747314--9747367	23	2.5	21	79	8	63	42	0	12	44	1.43
9747280--9747367	45	2.0	44	84	6	115	40	3	14	40	1.63
9747649--9747704	17	3.3	17	89	0	76	39	12	12	35	1.81
9750412--9750467	19	3.0	18	75	17	60	50	0	3	46	1.19
9750569--9750610	15	2.6	16	81	7	50	47	2	0	50	1.14
9750569--9750646	29	2.5	31	80	12	90	47	2	1	48	1.23
9751044--9751073	1	30.0	1	100	0	60	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9751256--9751333	39	2.0	39	100	0	156	46	12	10	30	1.75
9752205--9752261	14	3.9	14	73	17	53	56	1	36	5	1.32
9753796--9753853	25	2.3	25	78	3	62	41	5	13	39	1.67
9755598--9755643	3	15.3	3	100	0	92	65	0	0	34	0.93
9757560--9757601	4	10.8	4	79	5	50	19	0	7	73	1.05
9757700--9757737	20	2.0	20	94	5	69	50	2	0	47	1.15
9757652--9757870	76	2.9	77	86	4	302	46	6	8	38	1.60
9757803--9757983	57	3.1	58	84	7	233	50	5	10	33	1.60
9757803--9757972	60	2.9	57	82	14	204	50	5	11	32	1.60
9757963--9757998	17	2.2	17	90	5	56	66	2	0	30	1.06
9757904--9758046	75	1.9	74	82	5	180	54	3	7	34	1.46
9760807--9760864	18	3.2	18	92	0	98	37	15	5	41	1.70
9762421--9762470	7	6.7	7	80	13	55	84	0	8	8	0.79
9762421--9762455	15	2.3	15	85	0	52	85	0	5	8	0.73
9769408--9769440	10	3.2	10	95	4	57	0	12	0	87	0.53
9769410--9769442	11	3.1	11	95	4	59	0	15	0	84	0.61
9770037--9770087	17	3.0	17	71	5	50	49	0	0	50	1.00
9772666--9772784	46	2.5	46	79	4	121	29	11	15	43	1.82
9772759--9772976	46	4.7	46	79	2	240	30	15	11	43	1.81
9772724--9773036	46	6.8	46	76	5	238	30	13	14	41	1.84
9772724--9773012	92	3.1	91	81	5	321	30	12	12	43	1.80
9773661--9773699	20	2.0	20	94	0	69	87	12	0	0	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9778992--9779024	6	5.5	6	100	0	66	0	33	18	48	1.48
9783556--9783603	17	3.0	16	82	8	53	70	0	27	2	0.98
9783592--9783634	15	2.8	16	86	13	63	83	0	16	0	0.64
9784920--9784966	15	3.0	15	77	17	51	65	4	0	29	1.11
9785320--9785368	24	2.0	24	100	0	98	46	4	4	44	1.41
9794786--9794840	2	27.5	2	88	0	74	49	7	0	43	1.30
9799237--9799275	19	2.0	21	85	10	55	5	15	0	79	0.90
9801372--9801396	13	1.9	13	100	0	50	68	8	16	8	1.38
9803878--9803916	3	13.0	3	100	0	78	66	0	0	33	0.92
9803920--9803961	21	2.0	20	90	4	66	47	2	0	50	1.14
9804760--9804788	14	2.1	14	93	6	51	58	0	0	41	0.98
9805150--9805206	3	19.0	3	96	0	105	66	1	0	31	1.02
9813597--9813636	22	1.9	20	85	10	53	30	0	5	65	1.14
9813981--9814093	16	6.9	17	75	11	62	20	1	33	44	1.62
9814000--9814088	32	2.8	32	98	0	169	20	0	34	44	1.51
9815611--9815656	9	5.1	9	79	10	58	0	2	13	84	0.71
9815614--9815656	13	3.2	13	90	6	68	0	2	13	83	0.74
9815611--9815656	23	2.0	23	91	0	74	0	2	13	84	0.71
9815911--9816019	22	5.0	22	73	12	73	31	19	22	26	1.98
9815916--9816025	23	5.0	23	76	11	95	30	19	23	26	1.98
9816100--9816158	23	2.6	23	89	7	86	33	18	22	25	1.96
9816120--9816173	23	2.5	22	85	11	67	29	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9816285--9816333	23	2.1	23	84	0	62	34	22	18	24	1.96
9815868--9816661	176	4.5	175	84	2	957	36	17	21	25	1.95
9816316--9816377	22	2.9	21	75	13	72	29	20	24	25	1.99
9815866--9816661	351	2.3	351	85	1	1058	36	17	21	25	1.95
9816613--9816655	22	2.0	22	95	0	77	27	16	25	30	1.97
9816529--9816771	109	2.2	109	83	4	310	38	17	19	24	1.93
9817163--9817239	40	1.9	40	86	5	111	31	12	18	37	1.88
9826888--9826940	26	2.1	26	85	3	72	32	0	0	67	0.91
9826888--9826940	25	2.1	26	85	3	72	32	0	0	67	0.91
9827287--9827330	23	2.0	22	86	4	61	77	6	15	0	0.97
9829875--9829943	19	3.9	18	79	9	70	75	13	1	10	1.11
9829876--9829943	18	3.8	18	83	7	77	75	13	1	10	1.12
9833694--9833759	34	1.9	34	87	0	96	30	28	13	27	1.94
9834919--9834948	13	2.4	13	94	5	53	20	36	0	43	1.52
9837726--9838070	65	5.3	64	75	9	272	42	11	21	24	1.86
9837770--9838195	65	6.6	65	74	8	289	41	11	22	24	1.87
9837861--9838195	130	2.6	130	81	5	356	43	11	21	23	1.85
9837796--9838195	195	2.1	194	80	7	436	42	11	22	24	1.85
9838357--9838398	17	2.4	17	88	4	57	40	11	9	38	1.75
9839795--9839855	6	10.5	6	83	13	58	11	13	0	75	1.05
9839795--9839857	7	9.6	7	85	11	73	11	14	0	74	1.07
9839800--9839884	20	4.3	21	69	22	53	9	15	0	75	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9839799--9839881	27	3.1	28	85	11	95	8	14	0	77	0.99
9839795--9839884	46	2.0	45	85	10	121	8	15	0	75	1.03
9839795--9839881	7	13.3	6	78	15	59	8	14	0	77	0.99
9839941--9840000	30	2.0	30	96	0	111	33	28	3	35	1.74
9844517--9844552	16	2.3	16	90	4	56	66	2	5	25	1.27
9847684--9847713	14	2.2	14	94	5	53	50	6	13	30	1.67
9849538--9849598	2	32.5	2	76	12	58	40	0	0	59	0.98
9849550--9849629	29	2.7	29	79	11	74	41	0	0	58	0.98
9849537--9849669	42	3.0	43	83	13	132	43	0	0	55	1.05
9861325--9861369	22	2.1	22	88	12	67	17	2	8	71	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106