genome.fa.s57.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  49  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8509699--8509724	3	8.7	3	100	0	52	34	0	0	65	0.93
8512448--8512492	20	2.2	20	84	0	63	31	6	37	24	1.81
8512992--8513022	8	4.0	8	95	4	55	38	25	12	22	1.90
8515518--8515565	20	2.4	20	100	0	96	29	25	25	20	1.99
8517833--8517897	29	2.3	28	87	12	89	43	0	3	53	1.16
8517833--8517897	30	2.3	27	86	7	85	43	0	3	53	1.16
8519841--8519911	34	2.1	34	97	0	133	21	23	14	40	1.89
8522477--8522514	2	19.5	2	83	5	51	44	0	5	50	1.24
8523508--8523534	10	2.7	10	100	0	54	70	0	0	29	0.88
8525699--8525740	17	2.5	17	76	3	50	64	7	9	19	1.46
8530225--8530270	21	2.2	21	92	0	74	4	43	0	52	1.21
8530655--8530694	20	2.0	21	85	5	55	40	2	0	57	1.12
8530661--8530731	26	2.8	25	79	10	74	40	0	1	57	1.07
8530728--8530789	25	2.5	25	80	15	74	62	3	1	32	1.20
8531319--8531353	17	2.1	17	94	0	61	25	0	5	68	1.11
8532112--8532471	179	2.0	178	85	3	483	43	12	13	31	1.80
8535990--8536049	6	9.8	6	87	3	57	76	6	16	0	0.99
8535990--8536030	6	6.8	6	94	0	64	73	9	17	0	1.09
8536050--8536091	3	14.0	3	89	0	66	38	0	28	33	1.58
8537730--8537985	141	1.8	142	81	4	320	30	8	17	44	1.78
8539330--8539371	22	1.9	22	100	0	84	47	9	0	42	1.36
8539489--8539539	21	2.4	22	75	15	52	35	7	3	52	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8542393--8543120	22	33.8	22	69	10	209	47	4	9	37	1.58
8542617--8542766	43	3.4	42	76	9	113	49	2	10	37	1.52
8542823--8542906	43	2.0	43	83	4	107	47	7	7	38	1.58
8542793--8542927	64	2.1	63	82	5	155	46	5	8	38	1.60
8542887--8542938	21	2.4	22	87	6	79	50	0	7	42	1.31
8543034--8543074	3	13.7	3	80	19	50	65	0	0	34	0.93
8543035--8543073	8	5.1	8	87	12	64	64	0	0	35	0.94
8543141--8543197	22	2.6	22	78	10	62	45	5	8	40	1.58
8543334--8543403	22	3.2	21	80	8	77	44	8	8	38	1.66
8543397--8543441	22	2.0	22	82	0	54	44	11	6	37	1.66
8543736--8543772	18	2.1	18	89	0	56	45	10	2	40	1.53
8543773--8543815	22	2.0	22	90	0	68	48	2	13	34	1.56
8544421--8544486	29	2.2	29	81	7	80	50	3	1	45	1.26
8544448--8544544	42	2.4	39	77	15	99	44	3	2	50	1.29
8544766--8544833	23	3.0	22	72	8	57	52	2	2	41	1.31
8544869--8544898	15	1.9	16	93	6	53	36	0	0	63	0.95
8544886--8544986	18	5.7	18	71	21	63	47	0	1	49	1.19
8544864--8544998	34	4.0	34	68	23	97	45	0	2	51	1.18
8544864--8544993	37	3.8	34	70	21	103	46	0	1	50	1.16
8544902--8545007	18	5.9	17	75	11	70	46	0	2	50	1.16
8545482--8545523	22	1.9	22	90	0	66	38	2	19	40	1.64
8545568--8545764	44	4.5	44	72	9	141	47	4	7	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8545580--8545738	22	7.2	22	77	2	113	46	4	7	41	1.52
8546058--8546209	43	3.7	42	78	7	123	52	7	3	36	1.45
8546029--8546216	21	9.0	21	72	14	99	52	6	3	38	1.43
8546075--8546217	40	3.4	43	77	9	127	52	6	2	38	1.40
8547866--8548379	234	2.2	237	82	5	610	45	11	10	33	1.74
8558256--8558314	13	4.6	13	79	12	68	11	0	8	79	0.93
8558523--8558557	8	4.4	8	96	0	61	74	0	2	22	0.95
8561381--8561426	24	1.9	23	83	16	58	50	6	23	19	1.71
8570293--8570579	44	6.5	44	83	4	335	25	12	17	45	1.83
8570293--8570542	132	1.9	133	88	2	378	24	12	17	45	1.83
8570293--8570579	89	3.2	88	84	3	362	25	12	17	45	1.83
8570304--8570611	132	2.3	131	80	7	334	25	13	16	43	1.85
8571199--8571224	11	2.4	11	100	0	52	23	0	15	61	1.33
8573748--8573863	58	2.0	58	93	0	196	30	17	12	40	1.86
8573749--8573841	29	3.2	28	66	27	68	31	17	11	39	1.85
8583925--8583974	6	8.7	6	76	24	54	34	0	0	66	0.92
8583925--8583971	8	5.9	8	79	16	53	34	0	0	65	0.93
8583921--8583971	16	2.9	18	81	18	72	35	0	0	64	0.94
8583919--8583975	18	3.3	18	76	18	75	35	0	0	64	0.93
8583962--8584004	22	2.0	22	90	4	70	53	0	2	44	1.13
8587930--8587972	22	2.0	22	85	0	59	37	11	4	46	1.61
8591965--8591991	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8591989--8592032	22	2.0	22	81	0	52	38	13	9	38	1.77
8595123--8595169	21	2.2	21	92	0	76	27	2	4	65	1.22
8595131--8595171	21	2.0	21	100	0	82	19	2	4	73	1.13
8595436--8595474	20	2.0	20	94	0	69	17	0	61	20	1.34
8605109--8605168	21	2.5	25	74	17	65	13	13	0	73	1.10
8605109--8605158	21	2.4	21	96	0	91	14	12	0	74	1.09
8604381--8606265	981	1.9	965	82	8	2369	37	8	7	46	1.62
8606472--8606505	3	11.3	3	100	0	68	32	0	0	67	0.91
8615042--8615103	20	3.1	20	86	4	81	32	4	4	58	1.40
8619149--8619197	25	2.0	24	84	15	64	73	0	18	8	1.07
8619146--8619210	14	4.9	14	75	19	59	73	0	18	7	1.06
8620749--8620985	44	5.4	43	73	9	160	32	20	14	32	1.93
8620774--8621020	66	3.8	66	68	14	195	32	19	14	33	1.92
8620750--8620890	22	6.4	22	73	6	124	32	19	13	34	1.91
8623309--8623390	36	2.3	36	77	8	87	29	2	12	56	1.49
8628152--8628324	83	2.1	83	91	2	276	27	11	11	49	1.74
8633259--8633656	192	2.1	192	98	0	760	41	8	8	41	1.65
8641809--8641858	25	2.0	25	88	7	75	32	20	18	30	1.96
8644173--8644214	12	3.6	12	83	3	50	4	2	14	78	1.01
8652333--8652359	2	13.5	2	100	0	54	48	0	0	51	1.00
8656291--8656371	40	2.0	40	95	2	146	12	14	27	45	1.81
8656476--8656507	15	2.1	16	94	5	57	84	0	3	12	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8656536--8656599	26	2.5	24	80	7	65	45	1	10	42	1.49
8659398--8659455	27	2.3	25	82	14	66	44	12	6	36	1.68
8673212--8673752	144	3.8	142	80	6	522	40	11	14	33	1.81
8673212--8673752	288	1.9	287	80	5	646	40	11	14	33	1.81
8686078--8686146	3	23.0	3	84	0	93	27	1	5	65	1.24
8687179--8687248	35	2.0	35	94	5	124	25	12	17	44	1.84
8689103--8689136	11	3.0	11	95	4	59	88	0	11	0	0.52
8689521--8689551	13	2.4	13	94	0	53	0	9	3	87	0.66
8689524--8689559	18	1.9	19	88	5	56	2	8	2	86	0.77
8698704--8698764	30	2.0	30	96	0	113	39	19	3	37	1.68
8699231--8699291	31	2.0	31	100	0	122	49	0	3	47	1.18
8704548--8704607	31	1.9	31	93	0	102	46	0	5	48	1.24
8708184--8708246	21	3.0	21	76	6	65	77	0	12	9	0.98
8710593--8710617	2	12.5	2	100	0	50	48	0	0	52	1.00
8718240--8718590	90	3.9	90	78	10	274	42	5	7	44	1.57
8721991--8722033	9	4.8	9	82	0	59	34	13	32	18	1.90
8731520--8731612	18	4.7	20	67	21	54	76	3	7	12	1.12
8731561--8731622	7	8.6	7	85	7	70	83	3	3	9	0.86
8732180--8732220	17	2.4	18	80	12	50	82	7	2	7	0.91
8733110--8733161	21	2.5	20	76	11	52	69	0	7	23	1.14
8738630--8738660	15	2.1	15	100	0	62	87	6	0	6	0.68
8738849--8738939	27	3.2	27	63	19	67	38	13	4	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8738729--8738952	117	1.9	117	85	7	312	38	13	5	41	1.68
8738728--8738960	58	4.0	59	81	7	269	37	13	5	43	1.67
8738963--8739035	25	3.0	25	68	9	60	68	4	1	26	1.15
8739531--8739598	36	2.0	33	83	11	84	50	11	5	32	1.63
8739876--8739985	20	5.3	22	68	17	67	60	0	5	33	1.19
8740209--8740547	45	7.9	41	75	9	175	40	17	14	27	1.89
8740256--8740400	42	3.5	40	80	6	146	36	18	15	28	1.92
8740211--8740422	85	2.5	83	78	5	210	39	18	15	26	1.90
8740217--8740547	86	3.9	86	76	6	278	40	17	14	27	1.88
8740513--8740599	42	2.1	41	82	2	102	39	20	12	27	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106