genome.fa.s57.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  11  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1734631--1734668	19	2.0	19	94	0	67	10	2	42	44	1.52
1734631--1734697	33	2.0	33	88	0	98	16	2	43	37	1.63
1734657--1734718	23	2.6	23	82	7	70	20	3	40	35	1.69
1738681--1738723	18	2.3	19	96	4	79	65	2	13	18	1.38
1743953--1744163	107	2.0	107	86	0	296	38	11	13	36	1.81
1744149--1744467	22	14.4	22	71	12	172	27	13	24	34	1.92
1744149--1744205	23	2.6	22	81	13	64	24	14	28	33	1.94
1744133--1744434	111	2.7	111	78	6	319	28	13	23	35	1.92
1744740--1744767	12	2.3	12	100	0	56	42	14	17	25	1.87
1744723--1744770	18	2.7	18	81	12	53	41	12	18	27	1.86
1744849--1744913	26	2.4	27	77	10	62	33	12	13	40	1.82
1744935--1745046	40	2.8	42	81	10	144	33	10	19	36	1.87
1745102--1745126	9	2.8	9	100	0	50	36	12	32	20	1.89
1747634--1747754	58	2.1	58	84	0	161	33	9	22	34	1.86
1748947--1749024	10	7.2	10	73	13	57	3	19	0	76	0.93
1749438--1749469	15	2.1	15	94	0	55	6	28	0	65	1.16
1752072--1752394	131	2.5	127	79	9	348	53	8	17	20	1.69
1754020--1754052	14	2.4	14	94	0	57	84	0	15	0	0.61
1754556--1754609	22	2.5	22	90	3	92	38	27	9	24	1.86
1754591--1755257	105	6.3	105	78	8	605	35	16	15	32	1.90
1754624--1755178	215	2.6	215	84	4	681	36	16	14	32	1.90
1755554--1755605	17	2.9	18	80	8	61	73	26	0	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1755785--1755811	13	2.1	13	100	0	54	40	7	7	44	1.60
1760468--1760526	21	2.8	21	81	0	64	23	27	8	40	1.83
1761372--1761433	28	2.2	28	82	5	72	32	11	17	38	1.85
1773384--1773419	18	1.9	18	88	5	54	47	5	11	36	1.63
1776519--1776699	70	2.6	70	87	3	240	43	16	12	27	1.84
1776602--1776658	25	2.2	26	84	9	73	47	14	15	22	1.82
1779587--1779621	14	2.5	15	90	9	56	80	5	0	14	0.89
1782709--1782734	11	2.4	11	100	0	52	50	19	7	23	1.73
1784387--1784463	30	2.6	30	82	0	82	27	22	14	36	1.92
1785332--1785367	18	2.0	18	94	0	63	30	5	5	58	1.44
1785710--1785761	23	2.3	22	93	3	86	59	9	7	23	1.54
1785763--1785825	22	2.9	22	73	4	65	50	1	6	41	1.37
1787737--1787782	15	3.1	15	81	6	58	2	32	19	45	1.62
1792400--1792547	22	6.9	22	71	11	67	44	4	15	35	1.68
1792516--1792570	21	2.6	21	80	11	58	58	5	7	29	1.48
1792595--1792878	22	13.0	22	70	13	86	47	10	7	34	1.66
1792717--1792821	42	2.5	41	80	9	104	44	12	9	33	1.74
1797119--1797166	22	2.1	23	92	3	80	54	4	10	31	1.53
1797369--1797480	22	5.2	22	69	12	79	49	8	8	33	1.64
1797384--1797462	21	3.7	21	79	5	61	51	7	7	32	1.58
1797357--1797441	44	1.9	45	83	4	111	51	5	8	34	1.56
1797695--1797746	22	2.4	22	80	0	59	44	7	9	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797733--1797842	22	5.1	21	72	8	78	44	5	10	39	1.63
1800117--1800159	20	2.2	20	91	0	68	18	6	27	46	1.75
1800136--1800223	39	2.2	39	78	9	81	26	6	23	43	1.79
1800123--1800187	20	3.3	20	81	10	89	23	4	24	47	1.70
1800206--1800253	14	3.5	13	75	10	51	14	10	18	56	1.66
1800330--1800359	3	9.7	3	92	7	51	30	0	0	70	0.88
1807944--1807990	23	2.0	23	83	0	58	17	36	23	23	1.95
1816083--1816166	3	28.0	3	95	0	114	26	0	7	66	1.17
1816930--1816964	3	11.7	3	100	0	70	31	0	0	68	0.90
1816986--1817019	10	3.3	10	87	4	50	79	0	11	8	0.94
1817893--1817950	25	2.4	25	82	8	66	17	10	1	70	1.23
1817890--1817937	17	2.9	16	75	9	51	16	8	2	72	1.18
1819408--1819447	16	2.4	16	87	8	53	22	27	5	45	1.73
1826132--1826189	21	2.7	21	79	12	57	70	0	5	24	1.07
1826271--1826318	14	3.5	14	82	2	62	54	18	10	16	1.70
1828476--1828647	22	7.8	22	72	0	101	38	11	6	43	1.67
1828676--1828723	22	2.2	22	85	7	62	41	12	2	43	1.54
1829203--1829244	19	2.2	19	83	12	50	33	4	7	54	1.49
1833065--1833469	145	2.8	144	84	3	492	38	11	15	34	1.84
1834595--1835273	242	2.9	231	82	7	814	43	6	10	40	1.63
1837242--1837273	15	2.1	15	94	0	55	46	3	0	50	1.17
1837269--1837311	21	2.0	22	86	4	61	60	0	2	37	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839137--1839231	44	2.2	45	83	9	124	51	7	3	37	1.46
1839875--1840203	162	2.0	163	89	2	507	38	16	19	24	1.92
1843109--1843136	5	5.6	5	100	0	56	17	0	0	82	0.68
1844351--1844386	12	2.9	12	87	4	54	25	2	33	38	1.70
1844505--1844567	16	3.9	16	77	8	74	17	0	28	53	1.44
1844505--1844567	17	3.9	17	79	8	71	17	0	28	53	1.44
1844506--1844568	32	2.0	31	84	6	83	19	0	26	53	1.45
1846482--1846735	112	2.3	112	81	4	300	38	18	20	23	1.94
1846622--1846906	87	3.3	87	80	4	333	39	20	19	20	1.93
1847685--1847993	33	9.5	32	76	9	196	35	14	19	30	1.92
1847685--1848005	130	2.5	130	82	3	369	35	14	19	30	1.92
1847824--1848003	98	1.8	98	86	0	261	36	14	17	31	1.90
1849208--1849242	16	2.3	16	90	9	56	0	5	11	82	0.82
1850008--1850045	14	2.8	14	84	4	51	2	7	5	84	0.86
1855799--1855833	12	2.8	12	86	4	52	25	2	34	37	1.71
1855948--1856014	16	4.2	16	84	7	91	16	0	29	53	1.43
1855934--1856014	16	5.2	16	81	12	80	17	0	29	53	1.44
1856287--1856316	3	10.0	3	100	0	60	33	0	0	66	0.92
1858281--1858316	19	1.9	18	88	5	54	36	2	5	55	1.38
1860448--1860499	8	6.5	8	100	0	104	25	11	0	63	1.28
1860448--1860506	24	2.5	24	94	5	104	25	11	0	62	1.29
1860834--1860892	29	2.0	29	93	0	100	52	3	15	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1860839--1860902	29	2.2	29	85	0	83	54	3	14	28	1.55
1865377--1865427	20	2.5	20	83	3	66	47	5	0	47	1.26
1873284--1873314	16	1.9	16	93	0	53	19	0	35	45	1.51
1873308--1873336	15	2.0	15	93	6	51	6	0	44	48	1.29
1873345--1873411	16	4.2	16	88	7	91	19	0	28	52	1.46
1873337--1873403	15	4.2	17	87	11	81	22	0	26	50	1.49
1875628--1875663	19	1.9	18	88	5	54	36	2	5	55	1.38
1878176--1878204	8	3.6	8	100	0	58	24	10	0	65	1.23
1881548--1881586	15	2.6	15	84	12	53	79	0	10	10	0.94
1881551--1881586	14	2.5	14	90	4	54	80	0	8	11	0.90
1893620--1893657	20	1.9	20	100	0	76	26	18	5	50	1.68
1896972--1897003	2	16.0	2	100	0	64	50	0	0	50	1.00
1900045--1900090	17	2.7	18	76	6	51	34	0	0	65	0.93
1900608--1900679	38	2.0	34	81	10	81	50	2	4	43	1.36
1900712--1900766	25	2.2	25	96	0	101	23	16	5	54	1.63
1909478--1909502	2	12.5	2	100	0	50	48	0	0	52	1.00
1910063--1910105	12	3.2	13	78	18	52	13	2	6	76	1.08
1910068--1910116	15	3.4	15	86	13	68	18	0	6	75	1.00
1910062--1910118	27	2.2	27	81	6	73	15	1	5	77	1.03
1910070--1910126	26	2.1	27	81	9	64	19	0	5	75	0.99
1910088--1910137	18	2.8	17	85	8	64	20	0	4	76	0.95
1910294--1910407	50	2.4	46	82	7	129	26	5	12	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910329--1910377	23	2.1	23	82	14	57	24	6	12	57	1.58
1910394--1910540	68	2.1	69	85	3	190	26	4	13	55	1.58
1910410--1910560	24	6.3	24	72	11	123	27	4	12	55	1.56
1910478--1910560	13	6.6	13	72	15	59	28	4	10	55	1.55
1913955--1914090	18	7.6	17	72	17	89	31	2	11	53	1.52
1913930--1914089	34	4.6	34	82	9	180	29	3	12	54	1.55
1913946--1914090	38	4.0	37	83	9	167	30	3	11	54	1.53
1913955--1914094	56	2.6	55	72	18	125	32	2	11	53	1.51
1914113--1914212	35	2.9	35	72	19	82	26	5	16	53	1.63
1914188--1914244	27	2.1	27	84	12	73	24	3	17	54	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106