genome.fa.s57.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  31  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5776288--5776343	24	2.4	23	84	3	67	3	14	1	80	0.93
5781173--5781207	6	5.8	6	93	0	61	20	0	48	31	1.50
5781278--5781329	23	2.2	25	86	13	74	34	0	7	57	1.27
5781278--5781329	24	2.2	24	86	6	70	34	0	7	57	1.27
5783262--5783309	3	16.0	3	100	0	96	66	0	0	33	0.92
5784622--5785212	162	3.7	160	76	5	573	32	10	16	40	1.83
5791011--5791053	21	2.0	21	86	0	59	44	16	16	23	1.86
5794727--5794831	53	2.0	53	88	3	158	21	12	11	54	1.69
5800734--5800763	13	2.4	13	94	5	53	73	10	0	16	1.09
5806279--5806315	14	2.6	14	91	0	56	62	24	0	13	1.31
5807891--5807940	25	2.0	25	100	0	100	36	20	8	36	1.82
5811315--5811347	3	10.7	3	93	6	57	66	0	0	33	0.92
5811316--5811347	16	2.0	16	100	0	64	68	0	0	31	0.90
5817049--5817093	12	3.7	12	79	5	54	82	13	0	4	0.82
5817558--5817588	11	2.8	11	95	0	53	93	3	0	3	0.41
5818638--5818759	43	2.8	43	84	1	145	33	18	15	31	1.93
5820002--5820194	73	2.6	74	81	7	196	26	14	20	38	1.91
5820002--5820191	37	5.1	36	77	9	168	25	14	21	38	1.91
5820693--5821090	144	2.8	144	85	4	518	32	14	12	40	1.84
5824668--5824912	37	6.5	38	77	8	225	35	8	18	37	1.82
5824668--5824912	113	2.2	113	82	5	291	35	8	18	37	1.82
5824672--5824912	76	3.2	74	78	9	247	35	8	18	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5828333--5828407	34	2.2	35	86	11	102	57	10	8	24	1.59
5828457--5828504	16	3.0	16	76	11	53	62	6	2	29	1.31
5828500--5828550	22	2.4	21	80	12	59	60	5	7	25	1.47
5831805--5831845	18	2.4	17	87	4	55	4	9	4	80	1.00
5836440--5836556	40	3.0	39	81	5	128	30	19	18	30	1.96
5836451--5836591	40	3.5	40	78	7	117	32	19	16	31	1.94
5836489--5836591	39	2.6	39	81	7	111	33	18	15	32	1.92
5836667--5836710	22	2.0	22	83	12	56	18	18	6	56	1.62
5838338--5838561	112	2.0	112	99	0	439	37	9	7	45	1.64
5838750--5838818	13	5.3	13	82	0	75	26	7	20	46	1.76
5838776--5838873	46	2.1	47	83	5	119	30	6	16	46	1.71
5838828--5838880	13	4.0	14	85	9	58	28	5	18	47	1.72
5838822--5838880	26	2.3	26	84	0	73	30	5	16	47	1.69
5839204--5839237	15	2.3	15	89	0	50	61	5	5	26	1.42
5839790--5839905	52	2.2	52	86	3	153	50	16	19	13	1.78
5842545--5842589	23	2.0	23	86	8	65	8	15	2	73	1.18
5842591--5842629	7	5.6	7	82	11	53	2	12	0	84	0.72
5842581--5842624	21	2.0	23	91	8	74	4	13	2	79	0.98
5842550--5842629	28	2.9	27	75	12	83	5	13	2	78	1.01
5842593--5842680	21	4.2	20	78	8	70	4	20	1	73	1.07
5843148--5843185	13	2.9	13	81	14	51	10	10	0	78	0.95
5854418--5854456	19	2.1	19	85	0	51	46	0	23	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5854428--5854465	19	1.9	19	89	5	58	36	5	28	28	1.79
5858987--5859042	21	2.6	21	83	8	60	42	10	14	32	1.80
5859715--5859779	33	2.0	33	90	0	103	58	12	7	21	1.59
5860900--5861064	84	2.0	84	98	0	321	32	13	16	36	1.88
5863630--5863686	26	2.3	25	82	8	64	28	7	19	45	1.76
5864541--5864590	20	2.4	21	86	3	66	46	2	0	52	1.12
5864955--5865047	32	2.9	32	82	6	100	38	25	12	22	1.90
5867854--5867933	21	3.8	21	72	6	72	42	31	5	21	1.74
5869550--5869589	21	2.0	20	85	5	53	22	20	7	50	1.73
5873232--5873355	9	14.9	8	69	19	60	78	0	16	4	0.92
5873241--5873318	12	6.3	13	70	21	53	79	0	14	6	0.92
5873231--5873336	49	2.1	50	86	6	144	78	0	16	5	0.93
5873259--5873344	17	5.1	16	71	19	50	77	0	18	3	0.90
5873270--5873354	10	8.5	10	69	21	54	77	0	20	2	0.88
5873231--5873360	50	2.6	48	82	10	136	77	0	16	5	0.94
5874771--5874810	12	3.2	12	89	3	53	85	2	12	0	0.71
5875044--5875154	32	3.7	30	69	22	81	22	11	17	48	1.79
5875054--5875493	57	7.8	56	80	7	381	22	13	18	45	1.85
5875055--5875440	112	3.4	112	78	8	406	22	13	18	45	1.84
5875114--5875497	169	2.3	170	82	3	436	22	14	18	44	1.85
5875054--5875504	226	2.0	226	81	6	529	22	14	18	45	1.85
5875054--5875578	57	9.4	56	77	9	306	21	14	19	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5875453--5875558	51	2.1	51	89	0	158	17	16	20	45	1.86
5876671--5876741	29	2.4	29	88	0	97	19	11	15	53	1.72
5878325--5878367	22	1.9	23	86	13	63	37	0	2	60	1.10
5878442--5878510	32	2.2	32	81	5	77	56	7	0	36	1.27
5880277--5880310	11	3.0	11	83	8	50	61	0	0	38	0.96
5880487--5880529	19	2.2	20	80	12	54	37	0	2	60	1.10
5881167--5881217	12	3.7	14	82	15	54	54	11	1	31	1.47
5881179--5881244	12	5.3	13	77	12	59	54	15	1	28	1.50
5883190--5883336	43	3.4	43	80	6	158	40	19	10	29	1.84
5893337--5893879	145	3.7	143	76	10	433	31	14	12	40	1.84
5897808--5897855	17	2.8	17	93	0	78	22	16	47	12	1.80
5898643--5898995	183	1.9	180	93	1	598	35	16	11	36	1.85
5904533--5904657	44	2.9	44	83	5	139	56	13	9	20	1.66
5905418--5905454	12	3.0	12	92	4	56	56	13	8	21	1.63
5905444--5905496	20	2.7	20	90	0	88	49	13	9	28	1.73
5905478--5905513	16	2.3	16	90	4	56	58	13	5	22	1.56
5905796--5905827	12	2.6	13	85	14	50	84	0	0	15	0.63
5907290--5907367	6	13.0	6	84	8	54	24	1	0	74	0.89
5907292--5907367	18	4.6	16	77	17	68	23	1	0	75	0.89
5907301--5907364	3	22.7	3	76	17	66	26	1	0	71	0.94
5907292--5907370	15	6.1	12	77	20	63	24	1	0	74	0.89
5907579--5907634	29	1.9	29	89	7	87	37	3	1	57	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5908401--5908522	3	43.0	3	80	9	123	29	1	4	64	1.21
5909045--5909112	32	2.1	33	81	13	79	32	10	11	45	1.74
5909387--5909457	5	14.2	5	71	11	56	22	4	1	71	1.11
5909387--5909457	21	3.5	20	77	9	74	22	4	1	71	1.11
5909387--5909443	26	2.2	26	78	6	62	21	5	1	71	1.14
5909404--5909456	22	2.4	23	78	15	67	22	5	0	71	1.06
5914170--5914230	12	5.2	12	77	15	56	73	4	11	9	1.23
5914177--5914217	21	1.9	21	90	5	64	80	4	9	4	1.00
5914177--5914244	11	5.8	12	75	19	63	76	5	8	8	1.15
5915640--5915709	3	25.0	3	77	13	60	34	1	4	60	1.25
5915631--5915709	24	3.2	25	76	7	72	32	2	5	59	1.33
5916563--5916623	5	12.0	5	72	10	52	24	4	1	68	1.18
5918067--5918103	11	3.3	11	85	7	56	16	0	2	81	0.81
5918185--5918233	25	1.9	26	83	4	64	40	2	4	53	1.32
5919676--5919709	3	11.3	3	100	0	68	64	0	0	35	0.94
5922410--5922447	2	19.0	2	88	0	58	50	0	44	5	1.24
5922410--5922448	10	3.9	10	93	0	69	48	0	43	7	1.31
5927403--5927498	47	2.0	48	95	2	176	55	9	9	26	1.62
5928834--5928887	24	2.2	25	87	9	76	64	0	0	35	0.94
5928834--5928887	25	2.2	24	87	9	74	64	0	0	35	0.94
5938274--5938323	26	2.0	23	85	11	64	62	4	12	22	1.46
5940189--5940218	15	1.9	16	93	6	53	16	26	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5940602--5940627	12	2.2	12	100	0	52	15	19	7	57	1.62
5948015--5948067	22	2.4	21	74	22	54	5	9	9	75	1.18
5963454--5963493	15	2.9	14	88	7	55	7	20	5	67	1.34
5966919--5966951	17	1.9	17	88	11	50	18	0	3	78	0.87
5966923--5966969	23	2.1	22	84	4	58	17	2	6	74	1.12
5968596--5968642	23	2.0	24	87	4	69	68	4	6	21	1.30
5968953--5968989	19	1.9	19	88	0	56	37	0	0	62	0.96
5972927--5972981	25	2.2	25	80	9	58	38	5	9	47	1.58
5973037--5973090	27	2.0	26	82	10	65	79	12	0	7	0.92
5973044--5973091	23	2.2	22	85	14	64	79	12	0	8	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106