genome.fa.s57.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  17  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2831891--2831934	22	1.9	23	86	9	63	68	2	0	29	1.02
2832096--2832358	132	2.0	132	91	1	429	35	14	16	33	1.90
2834518--2834663	77	1.9	77	85	0	202	24	10	35	29	1.89
2835022--2835070	20	2.5	19	83	3	62	20	0	6	73	1.04
2835022--2835070	19	2.5	20	80	6	55	20	0	6	73	1.04
2835003--2835059	14	4.0	14	73	11	53	14	1	7	77	1.06
2835057--2835111	19	3.0	19	70	15	53	34	0	3	61	1.13
2835383--2835460	8	9.6	8	70	13	52	5	2	12	79	1.00
2835432--2835479	18	2.7	18	77	6	53	6	6	12	75	1.19
2835648--2835690	22	2.0	22	90	0	68	37	11	16	34	1.85
2835682--2835928	125	2.0	125	82	4	302	37	12	13	36	1.84
2835767--2836096	148	2.2	146	77	7	353	36	13	16	34	1.87
2836586--2836647	32	1.9	32	86	0	88	29	14	20	35	1.93
2836773--2836834	32	1.9	32	86	0	88	29	14	20	35	1.93
2836506--2836874	187	2.0	187	100	0	738	36	15	16	31	1.90
2836889--2837210	130	2.5	127	84	4	425	33	14	13	37	1.86
2838275--2838431	85	1.8	85	83	2	208	18	21	7	53	1.67
2838435--2838499	13	4.8	13	75	16	60	4	12	1	81	0.91
2838437--2838501	28	2.3	27	84	10	78	4	10	1	83	0.87
2847366--2847390	3	8.3	3	100	0	50	68	0	0	32	0.90
2848362--2848396	18	1.9	18	88	0	52	25	42	11	20	1.85
2858019--2858134	22	5.1	22	74	14	103	57	0	1	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2858041--2858136	15	5.9	15	75	21	95	58	0	2	39	1.10
2860593--2860655	10	5.7	11	76	20	53	73	4	0	22	1.02
2861422--2861464	17	2.5	17	81	14	52	13	2	4	79	1.00
2864437--2864520	30	2.8	30	82	7	100	40	4	1	53	1.30
2864435--2864527	29	3.2	30	79	8	104	39	5	1	53	1.31
2865107--2865143	11	3.3	11	85	7	56	48	0	0	51	1.00
2865107--2865174	23	2.8	23	80	6	64	51	1	4	42	1.31
2865128--2865202	28	2.7	27	72	24	68	50	2	5	41	1.39
2865140--2865206	30	2.2	30	82	12	84	53	2	5	37	1.41
2868339--2868369	16	1.9	16	100	0	62	51	3	0	45	1.17
2868865--2868905	21	2.0	21	95	0	73	56	0	7	36	1.27
2868466--2870946	654	3.9	645	75	14	2229	39	10	7	42	1.68
2871517--2871603	45	1.9	46	83	4	115	32	4	11	51	1.58
2871733--2871781	22	2.2	22	89	7	73	73	2	2	22	1.04
2871799--2871844	18	2.5	17	83	13	56	80	2	4	13	0.95
2872693--2872717	3	8.3	3	100	0	50	68	0	0	32	0.90
2872726--2872818	15	6.5	14	71	22	52	51	8	4	35	1.52
2873954--2874007	28	1.9	28	92	0	90	33	9	11	46	1.71
2875426--2875530	33	3.4	32	68	20	89	22	0	18	58	1.45
2875367--2875523	58	2.7	58	85	6	194	21	1	20	56	1.51
2875494--2875557	25	2.7	23	74	11	65	26	0	14	59	1.35
2875427--2875536	58	1.9	58	84	3	150	20	0	20	58	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2876309--2876356	25	1.9	25	83	8	62	52	6	2	39	1.39
2876629--2876678	25	2.0	26	84	11	68	52	2	2	44	1.24
2877630--2877685	21	2.7	21	100	0	112	10	19	17	51	1.74
2885330--2885388	22	2.7	23	79	7	70	64	16	5	13	1.45
2886251--2886300	22	2.3	22	79	3	57	42	2	2	54	1.23
2893264--2893334	35	2.0	35	91	0	115	33	4	16	45	1.67
2897337--2897377	12	3.4	12	86	0	64	41	26	9	21	1.84
2915837--2915887	21	2.4	21	78	15	59	39	37	13	9	1.78
2916785--2916836	8	5.9	8	79	16	50	78	0	1	19	0.84
2917555--2917585	15	2.0	16	93	6	55	48	0	0	51	1.00
2917654--2917681	14	2.0	14	100	0	56	50	0	0	50	1.00
2920936--2920967	15	2.1	16	94	5	57	68	9	9	12	1.39
2921691--2921733	17	2.4	18	88	3	61	67	11	18	2	1.32
2922646--2922688	3	14.3	3	100	0	86	32	0	0	67	0.91
2923075--2923139	7	9.4	7	75	8	53	52	26	0	21	1.47
2923081--2923135	19	2.8	19	83	5	65	50	27	0	21	1.49
2930933--2931172	100	2.4	101	80	4	245	37	11	8	42	1.73
2931475--2931532	30	2.0	28	90	9	91	56	10	8	24	1.60
2933358--2933405	24	2.0	24	87	0	69	41	10	4	43	1.58
2937680--2937737	25	2.4	25	78	18	68	25	1	6	65	1.27
2938295--2938320	13	2.0	13	100	0	52	38	15	15	30	1.88
2945677--2945719	22	2.0	22	85	0	59	74	9	13	2	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2946266--2946303	8	4.8	8	83	9	51	57	0	36	5	1.21
2948194--2948260	32	2.1	32	82	0	80	47	4	5	41	1.48
2948710--2948743	3	11.7	3	87	6	52	35	61	0	2	1.11
2956732--2956888	76	2.1	75	84	2	197	33	10	3	51	1.55
2956974--2957010	18	2.2	18	85	9	51	24	27	0	48	1.51
2962056--2962104	25	2.0	25	84	8	64	20	14	6	59	1.56
2965971--2966019	19	2.4	20	86	10	64	77	4	8	10	1.10
2965971--2966020	20	2.4	22	80	12	61	78	4	8	10	1.09
2980752--2980816	22	2.9	22	81	6	69	60	4	0	35	1.18
2981628--2981979	144	2.5	144	81	2	386	30	13	13	42	1.83
2988905--2989112	49	4.1	51	87	6	291	35	19	12	32	1.90
3008021--3008060	20	2.0	20	100	0	80	20	30	30	20	1.97
3009762--3009786	11	2.3	11	100	0	50	0	8	0	92	0.40
3009877--3009910	17	1.9	18	88	5	52	2	14	0	82	0.79
3011736--3011778	22	2.0	22	86	9	61	13	2	11	72	1.22
3018032--3018124	18	5.3	18	70	14	61	32	0	29	38	1.57
3018061--3018131	18	3.9	18	72	7	63	30	0	30	38	1.58
3021382--3022602	612	2.0	610	90	1	1939	47	8	4	39	1.55
3024816--3024937	41	2.9	39	79	17	106	19	6	5	68	1.33
3024866--3024916	21	2.5	21	84	9	61	17	5	3	72	1.20
3024813--3024938	20	6.2	20	69	25	68	19	6	5	69	1.31
3024892--3024928	17	2.1	17	90	5	56	13	8	8	70	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3025770--3025829	13	4.6	13	87	6	77	18	0	5	76	0.96
3025784--3025832	4	11.8	4	82	8	62	20	0	4	75	0.96
3025856--3025912	11	5.4	11	81	10	57	14	5	1	78	0.99
3025856--3025949	5	18.4	5	75	16	70	14	5	2	77	1.04
3025855--3025941	6	14.7	6	68	20	58	14	5	1	78	1.00
3025855--3025941	17	5.2	17	73	14	67	14	5	1	78	1.00
3025982--3026368	59	6.7	58	78	8	412	43	7	14	34	1.74
3025982--3026363	116	3.3	115	88	5	515	43	7	14	34	1.73
3027247--3027409	80	2.0	80	98	0	317	26	20	12	40	1.88
3031953--3032069	35	3.4	34	75	13	121	23	21	6	48	1.73
3031953--3032086	35	3.8	34	75	11	110	22	21	8	47	1.78
3041742--3041780	9	4.4	9	84	15	55	74	2	0	23	0.94
3041748--3041780	17	2.0	16	94	5	57	75	0	0	24	0.80
3042103--3042150	25	2.0	25	83	4	62	35	4	12	47	1.60
3052208--3052291	6	14.0	6	96	0	60	47	0	19	33	1.49
3052208--3052259	3	17.3	3	95	0	95	36	0	30	32	1.58
3052258--3052291	3	11.3	3	100	0	68	64	0	0	35	0.94
3052290--3052327	3	12.7	3	100	0	76	34	0	0	65	0.93
3052817--3052851	15	2.4	14	86	9	52	28	0	2	68	1.04
3055532--3055557	4	6.5	4	100	0	52	46	0	0	53	1.00
3055593--3055636	3	14.7	3	90	0	70	65	2	2	29	1.16
3055602--3055642	9	4.6	9	93	0	55	65	4	0	29	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3055879--3055912	10	3.4	10	87	0	50	0	14	0	85	0.60
3055897--3055954	20	2.8	20	80	12	64	15	1	5	77	1.02
3055897--3055954	22	2.8	19	78	12	53	15	1	5	77	1.02
3056065--3056325	130	2.0	128	96	1	486	37	21	10	29	1.87
3056364--3056417	22	2.5	22	90	6	83	38	20	14	25	1.91
3056350--3056446	22	4.4	22	77	11	74	38	15	14	31	1.88
3056527--3056572	22	2.1	22	83	0	56	30	15	19	34	1.93
3056547--3056879	104	3.2	103	80	2	380	37	16	10	34	1.83
3057460--3057522	26	2.4	26	86	0	81	33	12	19	34	1.89
3057555--3058053	157	3.1	161	86	9	698	30	13	15	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106