genome.fa.s57.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  21  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3655155--3655184	6	5.0	6	95	0	51	13	50	20	16	1.78
3664010--3664089	42	1.9	41	87	7	117	48	6	5	40	1.50
3665130--3665288	62	2.5	63	80	8	173	40	15	12	30	1.85
3669848--3670585	128	5.6	128	77	9	641	40	11	12	35	1.79
3669991--3670254	143	1.8	145	88	1	406	40	10	15	33	1.81
3670161--3670371	64	3.3	61	74	9	172	35	11	15	37	1.84
3670186--3670431	65	3.8	62	73	13	176	39	10	12	37	1.79
3670223--3670431	65	3.2	62	76	13	190	37	9	13	39	1.77
3669718--3670512	400	2.0	401	83	3	1017	40	10	13	35	1.80
3676389--3677249	160	5.4	160	79	7	730	32	10	14	43	1.79
3678446--3678478	17	2.0	17	94	5	59	48	0	3	48	1.17
3682184--3682276	44	2.1	44	82	4	107	50	12	16	20	1.77
3683660--3683824	86	1.9	84	86	2	231	29	18	13	38	1.89
3683819--3683931	51	2.2	51	87	0	163	30	17	12	38	1.87
3684637--3684812	3	62.7	3	71	16	92	36	2	4	56	1.35
3684638--3684716	5	16.0	5	75	15	58	36	0	5	58	1.20
3684638--3684808	27	6.2	26	72	14	105	36	2	4	55	1.36
3689157--3689181	11	2.3	11	100	0	50	16	0	8	76	1.02
3690190--3690231	21	1.9	22	85	9	59	50	0	2	47	1.14
3693756--3693805	6	8.3	6	81	14	59	80	4	0	16	0.87
3693756--3693806	11	4.8	11	76	9	61	78	3	0	17	0.90
3693749--3693805	25	2.3	24	88	11	80	78	3	0	17	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3693749--3693805	11	4.6	12	78	20	55	78	3	0	17	0.88
3693752--3693800	19	2.5	19	83	6	62	79	4	0	16	0.88
3695269--3695297	2	14.5	2	100	0	58	0	0	48	51	1.00
3699323--3699393	3	24.0	3	88	8	110	32	2	0	64	1.08
3702991--3703029	18	2.1	19	85	4	53	56	2	0	41	1.13
3703817--3704131	132	2.4	133	82	3	366	27	12	20	39	1.88
3714160--3714480	80	4.1	79	82	3	367	22	7	24	44	1.79
3722780--3722820	20	2.1	20	95	4	75	51	4	12	31	1.60
3723127--3723172	18	2.6	18	92	0	74	34	17	6	41	1.75
3724302--3724380	33	2.4	33	85	10	108	46	0	0	53	1.00
3724413--3724505	29	3.2	29	83	7	100	50	5	0	44	1.25
3724774--3724798	7	3.6	7	100	0	50	52	0	0	48	1.00
3735750--3735792	21	2.0	21	95	0	77	32	9	6	51	1.61
3735795--3735819	6	4.2	6	100	0	50	48	16	0	36	1.46
3736497--3736529	16	2.1	16	100	0	66	18	24	6	51	1.68
3739123--3739147	2	12.5	2	100	0	50	52	0	0	48	1.00
3746452--3746508	25	2.3	25	84	0	78	52	7	1	38	1.39
3746462--3746516	25	2.2	25	83	0	65	50	5	3	40	1.43
3747455--3747501	19	2.5	19	87	12	71	17	10	19	53	1.72
3747790--3747829	3	13.3	3	100	0	80	67	0	0	32	0.91
3748632--3748662	2	15.5	2	100	0	62	51	0	0	48	1.00
3749292--3749331	21	1.9	21	94	0	71	45	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3757864--3757925	30	2.1	30	93	0	106	46	4	25	22	1.71
3761913--3762099	95	2.0	94	86	5	261	39	6	6	48	1.55
3762227--3762256	1	30.0	1	93	0	51	96	0	3	0	0.21
3762597--3762737	15	9.0	15	66	23	51	50	0	1	47	1.15
3762624--3762713	19	5.1	19	73	21	70	51	0	1	47	1.08
3762583--3762653	26	2.8	25	83	8	90	50	0	1	47	1.09
3762741--3762896	23	7.3	22	76	17	159	42	0	1	55	1.12
3762742--3762899	18	8.6	18	74	20	132	42	0	1	55	1.12
3762758--3762834	31	2.5	32	79	12	97	44	0	1	54	1.08
3762758--3762899	39	3.4	40	80	14	155	42	0	1	55	1.13
3762740--3762899	62	2.6	58	78	16	169	41	0	1	56	1.12
3763724--3763766	2	21.5	2	100	0	86	51	0	0	48	1.00
3763815--3763846	1	32.0	1	100	0	64	100	0	0	0	0.00
3764317--3764371	26	2.2	25	77	6	58	49	3	1	45	1.30
3766508--3766557	20	2.6	19	81	9	57	60	0	2	38	1.09
3766767--3766841	32	2.4	32	86	6	109	46	12	9	32	1.73
3768139--3768186	19	2.6	19	80	3	62	52	0	4	43	1.20
3778639--3778689	19	2.6	20	81	9	61	64	5	15	13	1.46
3784591--3784656	18	3.7	19	77	15	70	12	0	12	75	1.04
3784587--3784660	23	3.1	23	81	9	87	12	0	10	77	1.01
3784587--3784660	24	3.1	22	81	12	76	12	0	10	77	1.01
3791715--3791739	12	2.1	12	100	0	50	60	16	8	16	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3793966--3794012	23	2.0	23	95	0	85	42	14	8	34	1.77
3794110--3794379	135	2.0	135	95	0	486	39	12	10	37	1.78
3795637--3795704	33	2.1	33	94	0	118	44	5	7	42	1.56
3798154--3798183	13	2.3	13	94	0	51	83	0	3	13	0.77
3798110--3798175	35	1.9	35	84	3	89	62	4	4	28	1.35
3801305--3801329	13	1.9	13	100	0	50	56	0	8	36	1.29
3802454--3802492	20	2.0	20	84	0	51	43	5	25	25	1.75
3805412--3805447	18	2.0	18	88	0	54	11	2	13	72	1.23
3807809--3807845	17	2.1	18	90	5	58	13	0	10	75	1.04
3807880--3807906	10	2.7	10	100	0	54	59	7	0	33	1.25
3809170--3809201	11	3.0	11	95	4	57	46	0	28	25	1.53
3811978--3812039	16	3.8	17	79	10	67	25	8	9	56	1.59
3812437--3812520	20	4.3	20	73	10	68	57	0	1	41	1.06
3812452--3812529	40	2.0	40	92	0	129	58	0	1	39	1.06
3815214--3815244	11	2.7	11	95	5	53	54	0	0	45	0.99
3816153--3816210	16	3.6	16	76	17	50	41	1	6	50	1.39
3817389--3817422	2	17.0	2	100	0	68	0	50	0	50	1.00
3835263--3835288	1	26.0	1	100	0	52	0	0	0	100	0.00
3835848--3835949	51	2.0	51	100	0	204	11	7	11	68	1.39
3846996--3847389	198	2.0	199	90	2	632	30	16	20	32	1.95
3849049--3849089	20	2.1	21	82	13	52	29	2	2	65	1.18
3849416--3849468	21	2.7	20	85	8	72	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3851047--3851174	45	2.8	45	81	0	148	37	21	7	34	1.80
3862804--3862829	10	2.6	10	100	0	52	53	0	7	38	1.30
3865953--3866079	68	1.9	68	89	0	200	42	13	7	37	1.71
3875070--3875114	9	5.0	9	82	17	58	35	8	13	42	1.75
3879018--3879063	21	2.2	21	88	3	67	28	4	6	60	1.40
3879355--3879398	21	2.0	22	91	4	72	25	6	15	52	1.68
3879861--3879909	19	2.6	19	86	0	62	4	20	0	75	0.96
3879985--3880118	15	9.6	14	66	20	68	5	17	0	76	1.02
3879961--3880118	12	12.8	12	69	20	62	4	18	1	75	1.04
3880054--3880114	11	5.9	11	75	14	67	0	14	0	85	0.60
3880058--3880118	10	6.3	9	82	14	77	0	14	0	85	0.60
3880054--3880118	20	3.2	20	88	0	103	0	15	0	84	0.62
3880059--3880115	29	2.0	30	93	6	100	0	15	0	84	0.63
3881029--3881070	22	1.9	22	85	9	59	52	19	0	28	1.46
3885764--3885999	114	2.1	115	80	8	259	37	11	15	35	1.83
3888982--3889036	21	2.6	21	97	0	101	38	21	7	32	1.81
3889693--3889744	25	2.1	25	92	0	86	42	26	9	21	1.83
3889746--3889819	28	2.6	28	78	0	85	45	25	6	21	1.76
3891181--3891208	13	2.2	13	100	0	56	28	0	21	50	1.49
3891218--3891482	63	4.2	60	67	18	139	40	13	10	34	1.80
3891206--3891593	188	2.1	189	89	2	584	39	12	10	37	1.78
3908473--3908507	16	2.2	16	100	0	70	31	11	11	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3920288--3920357	31	2.3	31	80	2	79	38	20	7	34	1.80
3920394--3920461	29	2.3	29	85	7	84	48	2	10	38	1.52
3920630--3920681	21	2.7	19	79	8	61	55	0	7	36	1.29
3921904--3921937	14	2.5	14	90	4	52	58	0	14	26	1.36
3922731--3922760	10	3.1	10	95	4	53	36	0	0	63	0.95
3923155--3923214	28	2.1	28	81	6	68	43	5	5	46	1.47
3933749--3933828	39	2.1	39	92	0	133	35	40	3	21	1.71
3936488--3936535	10	4.9	10	94	2	80	52	0	47	0	1.00
3941720--3941760	21	1.9	22	85	5	57	14	17	12	56	1.68
3946291--3946319	13	2.1	14	93	6	51	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106