genome.fa.s57.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  89  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18219200--18219250	18	2.8	18	82	8	59	66	0	0	33	0.92
18219212--18219265	25	2.2	25	83	12	67	68	0	0	31	0.90
18223142--18223171	10	3.1	10	95	4	53	26	0	0	73	0.84
18225082--18225116	2	17.5	2	93	0	61	0	48	0	51	1.00
18228013--18228056	22	2.1	22	88	12	67	43	0	0	56	0.99
18228019--18228082	29	2.2	29	88	0	92	42	1	0	56	1.09
18228013--18228071	23	2.8	22	80	10	61	40	1	0	57	1.09
18228029--18228087	29	2.0	29	96	0	109	37	1	0	61	1.07
18234506--18234550	23	1.9	23	86	4	63	35	40	8	15	1.79
18252273--18252305	17	2.0	17	88	5	50	27	0	0	72	0.85
18259628--18259657	9	3.2	9	95	4	51	63	0	0	36	0.95
18259630--18259659	10	3.1	10	95	4	53	63	0	0	36	0.95
18260760--18260790	4	7.8	4	100	0	62	51	22	0	25	1.48
18260921--18260949	2	14.5	2	100	0	58	48	0	0	51	1.00
18261525--18261556	2	16.0	2	100	0	64	50	0	0	50	1.00
18270429--18270475	24	2.0	24	87	8	69	48	8	2	40	1.45
18271050--18271177	60	2.1	61	88	5	197	46	4	22	25	1.71
18273984--18274047	34	1.9	33	83	3	83	20	1	31	46	1.60
18274287--18274380	47	2.0	47	100	0	188	23	12	21	42	1.87
18274577--18274631	2	27.5	2	100	0	110	0	49	0	50	1.00
18279451--18279482	15	2.2	15	94	5	57	31	6	0	62	1.20
18280074--18280099	4	6.5	4	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18284872--18284924	26	2.0	26	82	13	65	49	0	1	49	1.12
18285386--18285430	23	2.0	23	82	8	56	46	4	0	48	1.22
18290157--18290201	23	1.9	24	82	13	58	35	2	2	60	1.22
18291084--18291113	13	2.3	13	94	0	51	26	6	10	56	1.57
18292264--18292303	20	2.0	20	85	0	53	67	0	0	32	0.91
18292826--18292866	15	2.7	16	81	7	50	41	2	0	56	1.13
18293531--18293568	20	2.0	20	89	5	60	28	0	21	50	1.49
18300615--18300727	26	4.5	24	74	12	93	45	1	1	51	1.22
18300615--18300727	51	2.2	50	81	7	131	45	1	1	51	1.22
18300686--18300732	22	2.2	20	79	17	51	48	0	0	51	1.00
18300615--18300744	53	2.5	51	81	7	154	46	1	1	50	1.20
18302176--18302201	10	2.6	10	100	0	52	92	0	0	7	0.39
18310185--18310260	38	2.0	38	82	10	93	48	9	5	36	1.58
18310246--18310286	16	2.6	16	84	3	57	48	2	0	48	1.14
18310601--18310712	48	2.3	50	89	4	165	42	4	5	47	1.46
18315640--18315973	160	2.1	160	100	0	668	27	8	14	49	1.73
18318433--18318472	16	2.6	15	85	14	55	50	0	2	47	1.14
18330726--18330779	23	2.3	24	87	3	74	37	5	0	57	1.22
18331765--18331799	16	2.2	16	89	0	52	57	8	0	34	1.29
18332327--18332400	18	4.2	18	74	14	66	52	1	1	44	1.17
18332423--18332461	15	2.6	15	91	0	69	38	0	2	58	1.12
18332423--18332543	18	6.7	17	68	25	63	39	0	4	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18332729--18332755	14	1.9	14	100	0	54	37	0	7	55	1.28
18333374--18333446	38	1.9	38	94	5	130	34	6	16	42	1.75
18333729--18333762	13	2.6	13	90	0	59	44	0	0	55	0.99
18333730--18333762	6	5.0	7	85	14	52	42	0	0	57	0.98
18334212--18334253	15	2.8	15	92	0	66	42	23	33	0	1.55
18339503--18339536	12	2.9	12	95	4	61	17	23	35	23	1.95
18339503--18339537	18	2.0	17	88	5	52	17	22	34	25	1.96
18340167--18340211	21	2.2	20	84	8	54	51	0	0	48	1.00
18340177--18340228	21	2.7	20	82	11	63	44	0	0	55	0.99
18355505--18355565	26	2.3	26	77	11	61	49	4	3	42	1.40
18356584--18356635	25	2.1	25	82	13	63	40	5	9	44	1.61
18354753--18356867	521	4.0	531	83	6	2580	40	10	10	39	1.73
18362019--18362076	27	2.1	28	84	9	75	43	1	1	53	1.21
18362120--18362146	4	6.8	4	100	0	54	51	0	0	48	1.00
18373405--18373439	15	2.3	15	90	0	52	40	2	0	57	1.14
18382905--18383151	122	2.0	123	87	3	356	44	4	3	48	1.39
18383049--18383115	29	2.2	29	89	5	98	47	2	1	47	1.26
18383060--18383122	29	2.2	28	83	11	74	49	1	0	49	1.10
18390468--18390632	82	2.0	82	98	0	321	17	15	44	21	1.86
18391122--18391171	19	2.6	19	75	12	57	52	0	4	44	1.20
18391208--18391245	19	2.0	19	94	0	67	52	2	0	44	1.14
18394548--18394608	32	1.9	32	83	6	79	34	1	8	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18400080--18400107	10	2.8	10	100	0	56	7	32	21	39	1.80
18412639--18412665	2	13.5	2	100	0	54	51	0	0	48	1.00
18413801--18413844	21	2.0	23	86	8	65	70	9	4	15	1.30
18419800--18419877	27	2.9	26	74	14	77	41	2	2	53	1.28
18423486--18423541	23	2.4	24	85	8	80	53	0	0	46	1.00
18423531--18423566	15	2.3	16	95	4	65	47	0	0	52	1.00
18426800--18426833	17	2.0	17	88	0	50	61	2	0	35	1.11
18427047--18427082	14	2.5	14	90	4	54	16	0	0	83	0.65
18428343--18428386	18	2.4	19	81	11	56	43	0	0	56	0.99
18429819--18429870	12	4.3	12	81	18	72	32	0	0	67	0.91
18432187--18432223	2	18.5	2	88	0	56	43	0	5	51	1.24
18435019--18435054	18	2.1	17	89	5	54	38	0	8	52	1.32
18435243--18435290	20	2.4	20	80	16	55	62	2	0	35	1.07
18441462--18441535	32	2.3	32	92	0	121	36	0	9	54	1.33
18442018--18442055	20	1.9	20	88	0	58	5	13	7	73	1.22
18443380--18443422	19	2.3	19	79	0	50	46	0	0	53	1.00
18451279--18451312	2	17.0	2	100	0	68	50	0	0	50	1.00
18451397--18451429	2	16.5	2	100	0	66	0	0	48	51	1.00
18454525--18454586	27	2.3	27	88	5	90	27	35	17	19	1.94
18455940--18455994	24	2.3	24	78	6	67	43	1	0	54	1.10
18455937--18456007	25	2.8	24	80	8	70	42	2	0	54	1.14
18457385--18457426	18	2.5	17	85	11	59	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18458798--18458840	13	3.4	12	78	9	50	76	6	0	16	0.99
18458791--18458849	22	2.6	22	75	5	64	76	6	0	16	1.00
18460635--18460683	23	2.1	23	85	7	64	77	6	0	16	0.96
18460648--18460690	19	2.2	20	87	4	61	76	4	0	18	0.95
18461387--18461444	27	2.2	25	80	14	64	18	0	1	79	0.82
18461605--18461901	41	7.1	43	84	4	351	41	19	10	27	1.85
18462909--18462948	18	2.3	18	91	8	66	10	5	0	85	0.75
18473215--18473562	191	1.8	190	81	6	434	37	8	5	48	1.57
18473492--18473630	68	2.1	67	93	1	233	39	10	3	46	1.55
18475728--18475761	2	17.0	2	93	0	59	47	0	0	52	1.00
18475915--18475964	21	2.3	23	79	10	59	40	2	0	58	1.10
18492286--18492683	207	1.9	212	81	8	490	39	7	5	47	1.56
18494897--18494921	13	1.9	13	100	0	50	76	0	0	24	0.80
18494907--18494956	24	2.1	24	81	7	57	64	2	0	34	1.05
18494999--18495045	25	1.9	24	86	4	67	46	0	2	51	1.13
18498007--18498051	21	2.1	21	88	8	65	75	0	0	24	0.80
18498123--18498192	34	2.1	34	81	10	81	45	2	2	48	1.32
18498239--18498284	21	2.1	22	96	4	85	63	0	2	34	1.07
18498993--18499045	28	1.9	27	81	11	63	28	20	16	33	1.95
18501566--18501609	22	2.0	22	86	4	63	38	0	2	59	1.10
18503250--18503304	13	4.5	12	74	19	51	60	1	0	38	1.08
18503966--18504005	14	2.7	15	84	11	55	45	5	0	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18505054--18505100	20	2.3	21	85	10	62	46	0	4	48	1.21
18505166--18505228	23	2.9	23	81	11	62	34	1	0	63	1.04
18514278--18514308	10	3.1	10	95	0	53	41	0	0	58	0.98
18514795--18514832	2	19.0	2	88	0	58	44	0	5	50	1.24
18515552--18515589	16	2.2	18	86	9	53	50	0	0	50	1.00
18516987--18517031	21	2.0	22	87	8	65	68	0	11	20	1.19
18517940--18517977	20	1.9	19	89	5	58	55	7	2	34	1.43
18528360--18528412	21	2.6	20	85	5	70	33	0	0	66	0.92
18530463--18530493	1	31.0	1	93	0	53	96	0	3	0	0.21
18538816--18538869	26	2.1	26	85	0	72	57	0	1	40	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106