genome.fa.s57.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  61  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10979466--10979502	18	2.0	18	89	5	56	37	0	0	62	0.96
10979512--10979551	19	2.0	20	95	4	73	50	0	0	50	1.00
10979509--10979551	22	2.0	22	90	0	68	48	0	0	51	1.00
10983212--10983267	15	3.7	15	77	15	53	44	3	1	50	1.29
10983217--10983274	30	1.9	30	89	6	91	44	5	1	48	1.35
10984876--10984925	21	2.3	23	86	6	68	46	0	4	50	1.20
10986134--10986159	2	13.0	2	100	0	52	50	0	0	50	1.00
10987531--10987585	21	2.5	22	76	11	58	32	3	1	61	1.24
10988577--10988614	5	7.6	5	90	0	58	76	2	21	0	0.91
10988827--10988865	2	19.5	2	100	0	78	0	48	0	51	1.00
10998493--10998539	17	2.7	18	83	6	53	42	0	0	57	0.98
11000383--11000756	190	2.0	190	93	1	642	34	14	18	32	1.92
11001430--11001666	120	2.0	120	82	5	291	37	6	5	51	1.49
11001461--11001690	120	1.9	119	86	2	327	34	7	5	52	1.53
11004061--11004162	42	2.4	42	79	9	111	39	19	12	28	1.89
11005808--11005837	16	1.9	15	93	6	51	0	0	13	86	0.57
11011993--11012245	137	1.8	137	87	0	380	37	10	5	46	1.62
11012107--11012533	184	2.3	185	78	6	407	36	9	6	48	1.60
11012341--11012406	20	3.3	19	70	17	53	24	7	7	60	1.50
11016969--11017041	35	2.1	36	85	10	98	67	2	2	27	1.18
11032227--11032256	15	2.1	15	93	6	53	10	30	0	60	1.30
11039488--11039533	22	2.0	23	83	4	58	41	0	10	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11040084--11040124	20	2.1	20	95	4	75	26	14	0	58	1.37
11048119--11048163	18	2.4	18	85	3	54	44	8	6	40	1.62
11055362--11055478	57	2.0	60	85	8	161	19	11	6	62	1.50
11055362--11055478	60	2.0	58	85	8	157	19	11	6	62	1.50
11055805--11055855	23	2.3	21	86	6	66	19	0	0	80	0.71
11055802--11055855	24	2.4	24	87	9	78	20	0	0	79	0.73
11055802--11055870	12	6.1	11	70	12	50	24	0	0	75	0.81
11055958--11056005	25	1.9	25	87	8	71	39	6	4	50	1.47
11056029--11056071	5	8.0	5	85	14	59	18	0	0	81	0.69
11056035--11056073	18	2.2	18	95	4	71	15	0	0	84	0.62
11056089--11056144	13	4.6	12	78	10	60	73	10	0	16	1.10
11056406--11056453	10	4.7	10	76	5	51	0	31	0	68	0.90
11056942--11056982	16	2.6	15	88	7	55	14	4	0	80	0.87
11057223--11057412	42	4.5	42	75	7	156	46	17	8	26	1.78
11057250--11057409	41	3.9	40	78	4	151	48	18	9	23	1.77
11057529--11057588	31	1.9	31	86	6	86	36	15	8	40	1.77
11059141--11059168	9	3.1	9	100	0	56	10	10	0	78	0.96
11064575--11064606	8	3.9	8	95	4	55	21	3	0	75	0.95
11066415--11066459	18	2.5	18	96	0	81	26	20	11	42	1.85
11069475--11069553	24	3.5	23	78	8	83	40	6	2	50	1.41
11069592--11069625	15	2.2	16	89	5	52	35	0	0	64	0.94
11069532--11069649	39	2.9	40	72	19	102	41	1	3	53	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11069800--11069849	22	2.3	22	86	6	66	48	4	8	40	1.51
11070090--11070137	22	2.1	22	84	3	60	37	8	2	52	1.44
11073473--11073537	26	2.5	26	89	0	103	32	33	3	30	1.73
11076817--11076866	24	2.1	24	88	0	73	56	0	0	44	0.99
11076816--11076906	32	2.8	32	85	5	112	53	2	2	41	1.25
11076903--11076958	21	2.6	23	78	18	66	51	1	0	46	1.11
11080981--11081025	19	2.5	17	82	13	54	4	6	2	86	0.76
11082025--11082055	2	15.5	2	100	0	62	51	0	0	48	1.00
11085787--11085813	2	13.5	2	100	0	54	0	48	0	51	1.00
11091394--11091589	98	2.0	98	97	0	374	20	17	16	45	1.86
11092736--11092809	35	2.1	36	81	18	86	50	6	29	13	1.67
11093439--11093527	30	3.0	28	72	9	79	34	3	16	44	1.65
11093644--11093682	17	2.1	20	86	13	57	17	15	17	48	1.81
11094095--11094139	19	2.4	19	88	0	63	15	6	35	42	1.73
11094194--11094521	140	2.3	140	80	4	365	25	15	23	35	1.94
11094759--11095201	85	5.2	85	72	9	291	25	13	19	41	1.88
11094720--11095188	170	2.8	169	78	5	403	26	13	18	41	1.88
11095128--11095284	72	2.2	71	77	5	163	29	13	16	40	1.86
11095749--11095818	35	2.0	34	83	2	86	51	4	30	14	1.61
11097872--11097909	19	2.0	20	89	5	60	26	13	5	55	1.59
11099280--11099806	262	2.0	263	97	0	993	30	14	16	38	1.88
11100250--11100299	23	2.2	23	82	7	57	22	20	8	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11102064--11102333	135	2.0	135	97	0	513	41	16	17	24	1.90
11104000--11104137	63	2.2	63	83	5	172	28	10	29	31	1.90
11104754--11104814	31	2.0	31	84	12	81	42	8	13	36	1.74
11104945--11105283	43	8.0	42	83	4	369	24	11	18	45	1.82
11106254--11106305	24	2.1	25	85	3	70	21	0	1	76	0.87
11108655--11108682	12	2.3	12	100	0	56	14	21	32	32	1.93
11108849--11108879	13	2.4	13	94	0	53	64	0	12	22	1.27
11108882--11108937	29	2.0	28	82	3	67	39	0	12	48	1.41
11108929--11108977	10	4.6	11	79	20	52	63	0	0	36	0.95
11108937--11108983	23	2.0	23	88	8	69	68	0	0	31	0.90
11110495--11110553	3	19.7	3	100	0	118	67	0	0	32	0.91
11113806--11113843	3	12.7	3	100	0	76	34	0	0	65	0.93
11114826--11114879	28	2.0	27	82	10	65	50	3	0	46	1.19
11115664--11115697	17	1.9	18	88	5	52	55	0	0	44	0.99
11123011--11123049	2	19.5	2	100	0	78	51	0	48	0	1.00
11123366--11123421	13	4.2	13	77	8	58	51	1	1	44	1.22
11123366--11123421	28	2.1	28	83	6	71	51	1	1	44	1.22
11133745--11133784	22	1.9	20	85	10	53	60	5	15	20	1.53
11133810--11133851	15	2.9	15	80	16	52	52	0	0	47	1.00
11133823--11133865	19	2.1	21	87	8	63	44	0	2	53	1.13
11135273--11135324	21	2.5	22	87	6	72	50	0	0	50	1.00
11135270--11135324	20	2.7	21	78	10	69	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11135645--11135701	22	2.5	23	75	11	55	63	3	0	33	1.12
11135323--11135963	320	2.0	320	95	0	1138	40	13	12	32	1.83
11145633--11145704	37	1.9	37	97	0	135	29	27	4	38	1.75
11155727--11155759	2	16.5	2	93	0	57	51	3	0	45	1.16
11155723--11155759	12	3.1	12	96	0	65	51	5	0	43	1.24
11159590--11159617	2	14.0	2	100	0	56	50	0	0	50	1.00
11164580--11165065	252	2.0	242	88	4	731	27	17	16	37	1.92
11167204--11167305	34	3.1	34	87	5	145	13	32	1	51	1.52
11167204--11167289	32	2.6	33	92	3	138	12	32	0	54	1.38
11184139--11184355	81	2.7	81	84	1	283	34	28	5	31	1.79
11186054--11186103	23	2.2	23	82	3	57	50	14	14	22	1.77
11186152--11186200	15	3.2	14	88	11	62	69	8	0	22	1.14
11186928--11186980	23	2.3	23	83	9	63	35	7	5	50	1.54
11188056--11188102	23	2.1	22	88	4	67	82	6	6	4	0.92
11199097--11199814	97	7.3	98	73	10	479	32	9	16	40	1.82
11199104--11199829	49	14.8	47	72	10	372	32	9	17	40	1.82
11199185--11199829	100	6.5	97	73	8	335	32	9	17	40	1.82
11200257--11200306	23	2.2	23	85	0	64	56	4	8	32	1.47
11201114--11201175	29	2.1	29	96	0	115	33	6	4	54	1.47
11208632--11208656	13	1.9	13	100	0	50	84	0	0	16	0.63
11218017--11218047	2	15.5	2	100	0	62	51	0	0	48	1.00
11219128--11219177	24	2.1	24	100	0	100	18	30	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11219591--11219798	103	2.0	103	100	0	416	37	21	15	25	1.93
11223592--11223646	23	2.4	23	93	0	92	36	9	9	45	1.68
11227590--11227685	40	2.4	39	84	5	129	33	7	17	41	1.77
11227868--11227917	23	2.2	22	82	6	64	52	16	10	22	1.73
11229130--11229163	3	11.7	3	93	6	61	70	0	0	29	0.87
11229763--11229843	40	2.0	42	87	7	121	23	8	6	61	1.47
11230614--11230663	23	2.0	26	85	11	70	52	6	0	42	1.26
11237181--11237217	2	18.5	2	100	0	74	51	48	0	0	1.00
11238427--11238470	22	2.0	22	86	0	61	34	13	13	38	1.84
11253345--11253416	28	2.6	27	77	2	72	47	2	0	50	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106