genome.fa.s57.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  48  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8320904--8321017	22	4.6	27	71	25	74	42	1	0	54	1.16
8320895--8321040	41	3.4	42	76	13	111	43	1	1	54	1.17
8321579--8321617	17	2.4	16	82	4	51	76	5	2	15	1.06
8329206--8329249	22	2.0	22	100	0	88	22	9	22	45	1.80
8331015--8331058	22	2.0	22	81	4	52	15	9	18	56	1.65
8331663--8331776	33	3.5	32	84	7	140	31	4	9	54	1.53
8331825--8331887	31	2.1	29	88	8	92	30	6	12	50	1.65
8331902--8331999	22	4.5	22	70	24	75	26	4	12	57	1.53
8333136--8333174	18	2.2	17	86	4	51	28	5	5	61	1.39
8342996--8343218	88	2.5	90	82	7	260	35	7	22	34	1.83
8343665--8343803	43	3.2	42	81	4	161	30	9	15	44	1.78
8344512--8344701	96	2.0	95	95	3	346	22	5	21	50	1.69
8345287--8345406	20	6.2	20	65	19	65	31	4	10	53	1.55
8345383--8345527	78	1.9	78	88	2	220	32	6	10	51	1.61
8354056--8354098	19	2.2	20	88	12	63	53	0	2	44	1.13
8354067--8354112	19	2.4	21	82	13	55	45	0	4	50	1.21
8355441--8355498	21	2.8	21	81	2	73	50	3	0	46	1.18
8356284--8356320	2	20.0	2	84	15	53	51	0	0	48	1.00
8358210--8358247	20	1.9	20	94	0	67	47	7	0	44	1.32
8358928--8358953	12	2.2	12	100	0	52	23	0	7	69	1.14
8367672--8367758	33	2.6	33	80	7	113	47	12	13	26	1.79
8368073--8368177	39	2.7	38	82	5	113	33	15	11	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8369029--8369081	24	2.2	25	86	10	74	3	15	0	81	0.83
8369029--8369081	25	2.2	24	86	3	70	3	15	0	81	0.83
8369046--8369081	17	2.3	15	90	9	54	0	16	0	83	0.65
8372373--8372416	17	2.7	18	76	16	51	43	6	0	50	1.29
8372616--8372650	13	2.7	13	95	0	61	17	0	25	57	1.40
8372616--8372658	13	3.2	13	90	3	50	20	2	23	53	1.57
8372632--8372679	21	2.3	20	71	3	51	20	2	31	45	1.63
8374742--8374802	20	3.0	20	79	13	72	26	11	16	45	1.81
8375076--8375136	13	4.7	13	80	13	54	4	3	9	81	0.94
8375281--8375337	22	2.6	21	75	8	60	28	17	24	29	1.97
8375336--8375389	22	2.4	23	74	17	60	27	14	27	29	1.95
8375411--8375755	40	8.6	40	75	7	229	35	10	14	39	1.81
8375418--8375755	80	4.2	81	78	8	325	35	10	14	39	1.80
8375445--8375709	119	2.2	119	81	6	304	36	11	14	37	1.82
8375451--8375814	159	2.3	159	80	6	389	34	11	14	39	1.83
8375731--8375817	40	2.2	40	85	4	113	26	12	14	45	1.81
8377423--8377471	23	2.1	23	85	7	64	14	6	4	75	1.14
8381934--8382076	39	3.7	39	82	2	155	32	9	20	37	1.86
8384295--8384326	12	2.8	12	95	4	57	9	0	53	37	1.34
8384347--8384381	13	2.7	13	90	0	52	17	2	25	54	1.57
8384919--8385184	143	1.9	142	80	10	319	40	12	13	33	1.82
8386472--8386512	19	2.1	20	86	13	59	39	9	0	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8387738--8387793	18	3.1	17	73	19	51	69	7	7	16	1.33
8387820--8387896	25	3.0	24	78	12	75	70	5	2	22	1.20
8387836--8387901	31	2.2	30	81	10	80	71	4	3	21	1.18
8388258--8388315	19	3.1	19	79	0	62	29	0	20	50	1.49
8388578--8388648	25	2.9	24	76	14	72	21	2	2	73	1.09
8388578--8388639	4	15.2	4	74	15	56	22	1	3	72	1.08
8389018--8389065	24	2.0	24	100	0	96	20	33	25	20	1.97
8389170--8389203	3	11.7	3	93	6	61	67	0	0	32	0.91
8393126--8393162	12	3.0	13	84	7	51	43	29	5	21	1.75
8393619--8394074	187	2.4	186	82	7	539	41	11	10	36	1.76
8393931--8394198	127	2.1	124	85	4	351	41	10	12	35	1.77
8393958--8394151	62	3.1	59	70	18	142	44	10	10	34	1.74
8394058--8394843	187	4.2	183	79	6	695	40	11	12	35	1.79
8393774--8394384	314	2.0	312	85	5	849	41	10	11	35	1.76
8400902--8401162	142	1.8	142	80	3	310	32	6	16	44	1.75
8402600--8402842	134	1.8	134	81	3	310	40	19	11	28	1.86
8406820--8406906	39	2.3	36	75	13	84	49	6	5	37	1.54
8407890--8407942	25	2.0	27	85	10	74	5	13	5	75	1.16
8408498--8408549	22	2.4	22	83	0	59	32	15	25	26	1.95
8410467--8410500	15	2.4	14	90	5	50	0	11	0	88	0.52
8412667--8412734	23	2.9	24	76	10	70	58	11	0	29	1.33
8414195--8414243	11	4.4	11	79	10	55	73	0	2	24	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8416082--8416141	18	3.3	18	88	2	84	68	10	3	18	1.32
8417208--8417323	61	1.9	61	91	3	189	37	5	6	50	1.51
8420514--8420568	26	2.0	26	86	10	74	61	5	9	23	1.46
8421808--8421924	3	40.3	3	72	10	82	32	3	3	60	1.30
8421808--8421923	19	6.1	18	72	17	67	32	3	3	60	1.30
8422354--8422400	11	4.4	11	78	5	51	51	8	6	34	1.58
8422717--8422784	21	3.3	20	82	13	86	14	4	5	75	1.16
8423043--8423075	16	2.0	17	94	5	59	48	0	0	51	1.00
8429915--8429948	18	1.9	18	88	5	52	50	2	5	41	1.42
8431388--8431749	48	7.5	47	84	3	375	39	18	12	29	1.88
8432047--8432095	19	2.6	20	84	9	68	10	10	2	77	1.07
8432047--8432093	9	5.1	9	78	12	51	8	10	2	78	1.04
8436440--8436529	44	2.0	44	82	0	108	31	10	4	54	1.53
8438932--8439017	44	2.0	44	88	4	129	53	12	13	19	1.72
8439778--8439840	30	2.1	30	87	0	90	25	15	7	50	1.71
8439788--8439853	30	2.2	30	83	2	89	27	16	12	43	1.83
8440323--8440410	3	31.3	3	76	11	71	29	4	3	62	1.31
8440323--8440393	10	6.7	11	70	19	53	29	1	4	64	1.20
8441205--8441260	27	2.1	27	83	6	69	19	1	7	71	1.18
8445406--8445473	32	2.1	32	83	2	82	33	7	7	51	1.58
8446400--8446442	7	6.0	7	83	5	50	9	0	9	81	0.88
8452640--8452763	11	10.6	12	68	23	54	45	4	0	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8453116--8453154	19	2.0	20	90	5	62	43	0	0	56	0.99
8453612--8453638	3	9.0	3	100	0	54	33	0	0	66	0.92
8454442--8454505	26	2.5	26	76	7	67	18	6	4	70	1.27
8456356--8456402	24	2.0	24	86	0	67	38	17	8	36	1.80
8459764--8459826	26	2.4	25	76	21	67	44	1	6	47	1.38
8459981--8460030	21	2.4	21	83	9	66	48	2	2	48	1.24
8461124--8461176	22	2.3	23	90	9	83	60	0	3	35	1.15
8461258--8461313	13	4.8	12	73	22	57	51	1	0	46	1.11
8461259--8461315	22	2.5	22	83	13	71	50	1	0	47	1.11
8461269--8461316	11	4.5	11	80	12	55	50	2	0	47	1.12
8462216--8462277	22	2.9	22	76	11	74	54	0	8	37	1.30
8463436--8463482	14	3.4	14	84	0	67	19	0	31	48	1.49
8463478--8463509	2	16.0	2	100	0	64	50	0	0	50	1.00
8464953--8465005	26	2.0	26	100	0	106	43	11	3	41	1.58
8466368--8466406	16	2.4	16	91	4	60	61	2	7	28	1.37
8466626--8466723	48	2.1	48	80	5	110	44	5	4	45	1.44
8469135--8469190	19	2.9	19	76	5	58	19	0	25	55	1.43
8470645--8470800	53	2.9	53	79	0	159	32	14	28	24	1.95
8470671--8470819	54	2.8	54	79	8	144	33	12	28	25	1.92
8470775--8470878	54	1.9	54	80	7	122	30	7	30	30	1.85
8475204--8475243	15	2.7	15	92	0	71	52	17	7	22	1.69
8478968--8479013	16	2.8	16	90	9	74	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8479015--8479122	30	3.7	29	78	13	114	45	3	11	39	1.57
8479151--8479196	23	2.0	23	86	0	65	56	2	10	30	1.46
8481546--8481583	18	2.1	18	85	9	51	55	0	7	36	1.29
8481559--8481760	106	1.9	106	86	4	291	41	4	8	45	1.54
8493006--8493109	26	4.0	26	87	0	145	28	17	16	37	1.91
8502748--8502792	19	2.3	20	88	3	65	35	2	4	57	1.31
8502763--8502801	20	2.0	20	85	10	53	35	5	5	53	1.45
8503364--8503411	20	2.3	22	85	7	64	66	0	2	31	1.03
8503364--8503412	21	2.3	22	82	10	57	67	0	2	30	1.02
8504239--8504274	3	12.0	3	100	0	72	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106