genome.fa.s57.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  65  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11772028--11772068	19	2.1	20	86	4	57	48	0	9	41	1.36
11772905--11773009	18	5.7	18	75	16	92	49	11	5	33	1.62
11772905--11773031	18	6.6	19	73	22	90	48	12	5	33	1.64
11773126--11773173	25	2.0	25	95	4	89	50	10	4	35	1.56
11773124--11773182	25	2.4	24	86	8	84	54	8	3	33	1.48
11773240--11773292	20	2.6	20	88	8	72	50	11	5	32	1.61
11773266--11773328	33	1.9	33	90	6	101	55	12	6	25	1.60
11773302--11773368	28	2.4	28	87	7	91	55	13	2	28	1.53
11773332--11773417	32	2.7	32	80	7	102	52	9	5	32	1.57
11773391--11773609	20	10.9	20	69	14	105	52	10	5	31	1.59
11773564--11773724	24	7.0	24	70	16	135	54	9	3	32	1.50
11773564--11773705	47	3.0	45	80	10	153	54	8	3	33	1.47
11773649--11773713	21	3.2	20	80	6	76	55	10	3	30	1.50
11773649--11773694	20	2.2	20	88	3	65	56	10	2	30	1.46
11773636--11773724	21	4.1	21	71	13	63	55	10	2	32	1.46
11773694--11773748	17	3.3	16	75	7	56	52	10	7	29	1.63
11774121--11774309	42	4.5	42	80	13	194	40	15	12	31	1.85
11774121--11774309	84	2.2	83	82	9	231	40	15	12	31	1.85
11775767--11775815	12	3.9	12	76	10	53	2	6	6	85	0.80
11778542--11778566	8	3.1	8	100	0	50	40	12	24	24	1.88
11781753--11781839	16	4.8	18	74	17	83	48	9	5	36	1.59
11781800--11781856	16	3.3	16	75	17	60	50	12	5	31	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11781753--11781863	18	6.0	20	73	21	84	49	9	5	35	1.59
11781946--11782007	24	2.6	24	87	7	90	53	11	3	32	1.53
11782056--11782107	24	2.2	23	80	10	59	59	11	1	26	1.42
11782079--11782146	20	3.4	19	80	11	66	55	10	4	29	1.52
11782089--11782148	20	2.9	21	78	9	70	53	13	5	28	1.60
11782116--11782255	33	4.3	32	74	9	115	52	14	6	26	1.65
11782142--11782181	21	2.0	20	90	5	62	57	15	5	22	1.57
11782132--11782275	32	4.5	32	77	4	137	52	14	6	26	1.65
11782244--11782292	20	2.4	21	82	3	64	48	14	6	30	1.67
11782340--11782429	21	4.0	23	75	16	82	54	11	4	30	1.55
11782399--11782472	17	4.2	16	73	14	58	50	9	9	31	1.67
11782435--11782472	20	2.0	18	90	10	58	47	10	7	34	1.67
11782443--11782497	30	1.9	30	85	10	80	47	14	9	29	1.75
11782469--11782503	17	2.1	17	89	10	54	57	11	5	25	1.56
11782939--11782969	15	2.1	15	93	0	53	45	25	0	29	1.54
11783112--11783153	19	2.2	19	83	8	50	76	4	0	19	0.96
11783696--11784039	107	3.4	103	84	9	411	39	9	6	44	1.62
11783696--11784039	101	3.3	100	84	9	408	39	9	6	44	1.62
11784163--11784193	16	1.9	16	93	0	53	67	0	3	29	1.06
11784800--11784854	28	2.0	28	92	0	92	29	25	16	29	1.97
11800366--11800594	93	2.5	93	81	13	251	50	2	3	42	1.34
11801359--11801391	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11808999--11809030	15	2.1	15	94	0	55	75	3	6	15	1.14
11811962--11811998	17	2.3	16	90	9	58	51	10	13	24	1.73
11815094--11815153	18	3.4	16	76	17	57	31	5	1	61	1.27
11817615--11817676	2	31.5	2	88	3	81	50	4	0	45	1.23
11821096--11821140	23	1.9	24	86	4	65	55	6	13	24	1.62
11834517--11834557	8	5.2	8	85	2	57	41	0	0	58	0.98
11834517--11834572	16	3.6	15	85	2	58	46	0	0	53	1.00
11836368--11836420	6	8.8	6	85	0	70	35	15	47	1	1.56
11838877--11839033	78	2.0	78	83	4	201	42	15	21	21	1.89
11839715--11839800	44	2.0	43	86	4	120	13	12	26	46	1.80
11840093--11840151	22	2.7	23	82	14	65	42	1	1	54	1.20
11842561--11842594	17	1.9	18	94	5	61	67	0	0	32	0.91
11844473--11844519	19	2.5	19	82	3	60	19	10	4	65	1.39
11850803--11850843	22	1.9	21	85	5	55	48	9	12	29	1.72
11853825--11853864	20	1.9	20	85	10	53	25	7	5	62	1.42
11855898--11855930	17	2.0	17	88	5	50	66	3	12	18	1.36
11864898--11864956	28	2.1	28	84	3	75	40	15	8	35	1.77
11869959--11870007	3	16.7	3	95	4	91	32	0	0	67	0.91
11871813--11871880	33	2.1	33	88	0	100	52	14	13	19	1.73
11874762--11874802	2	20.5	2	100	0	82	0	48	0	51	1.00
11875248--11875281	18	1.9	18	88	5	52	26	0	0	73	0.83
11876061--11876109	22	2.2	22	100	0	98	30	14	6	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11876154--11876192	13	2.9	13	84	3	51	71	0	2	25	0.98
11878059--11878100	21	2.0	21	100	0	84	38	9	14	38	1.78
11878902--11879134	128	1.8	124	79	14	269	34	10	13	41	1.80
11879529--11879597	35	2.0	35	85	5	95	37	10	15	36	1.82
11882797--11882849	25	2.1	25	85	0	70	43	30	5	20	1.75
11882797--11882835	12	3.1	13	81	7	53	41	30	7	20	1.80
11882861--11882891	12	2.6	12	94	0	53	38	19	12	29	1.89
11883636--11884307	187	3.6	184	80	7	633	42	9	11	36	1.73
11884167--11884430	124	2.1	124	85	1	350	43	7	10	37	1.69
11884167--11884361	62	3.2	60	68	16	155	43	7	11	37	1.69
11883991--11884616	311	2.0	310	83	2	774	43	8	10	37	1.70
11884302--11885028	186	3.9	185	79	7	675	42	10	10	36	1.75
11884291--11885028	374	2.0	373	80	6	823	42	10	10	36	1.75
11891645--11891699	24	2.3	24	93	0	92	30	5	27	36	1.79
11892055--11892089	17	1.9	19	88	11	56	22	14	40	22	1.90
11892511--11892550	18	2.2	18	100	0	80	32	27	15	25	1.95
11892518--11892557	18	2.2	18	86	0	53	40	22	10	27	1.86
11892851--11893101	134	1.9	135	79	0	288	43	18	8	29	1.80
11893346--11893391	24	1.9	24	86	0	65	50	0	0	50	1.00
11897638--11897689	24	2.2	24	100	0	104	51	25	7	15	1.69
11908030--11908057	6	4.7	6	100	0	56	85	0	14	0	0.59
11909866--11909904	2	19.5	2	94	0	69	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11910974--11911018	2	22.5	2	95	0	81	0	51	0	48	1.00
11913780--11913821	16	2.6	16	85	11	59	73	0	9	16	1.08
11913780--11913827	16	3.0	15	82	14	53	72	0	10	16	1.10
11918352--11918386	18	2.0	18	88	5	54	34	0	5	60	1.21
11918602--11918725	63	2.0	63	81	10	148	41	6	6	45	1.55
11919017--11919304	150	1.9	148	80	10	336	41	9	10	38	1.72
11931972--11932017	10	4.5	10	86	5	65	82	0	15	2	0.76
11931970--11932017	21	2.3	21	89	7	71	81	0	16	2	0.79
11933044--11933101	9	6.4	9	78	7	55	25	20	10	43	1.84
11933044--11933101	27	2.1	27	83	0	71	25	20	10	43	1.84
11933693--11933756	23	2.8	22	71	13	58	42	23	4	29	1.74
11936094--11936392	57	5.1	55	80	11	255	49	5	7	37	1.54
11936895--11937008	56	2.0	56	93	0	192	47	9	6	36	1.61
11939605--11939659	24	2.4	23	81	6	67	76	9	9	5	1.15
11942035--11942352	171	1.8	175	81	5	396	35	11	14	38	1.83
11942680--11942750	34	2.1	34	89	0	106	19	14	18	47	1.82
11945374--11945421	21	2.3	21	81	0	60	41	12	25	20	1.87
11945870--11945894	13	1.9	13	100	0	50	60	0	0	40	0.97
11946393--11946435	22	2.0	22	90	9	70	55	0	9	34	1.32
11946428--11946484	8	6.5	8	77	16	51	57	3	0	38	1.16
11946407--11946484	36	2.1	38	85	4	106	56	2	2	38	1.27
11946407--11946500	29	3.3	29	73	21	83	53	3	2	41	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11948190--11948262	28	2.8	26	80	13	78	56	1	2	39	1.22
11948958--11949003	24	1.9	24	86	0	65	43	0	2	54	1.12
11949031--11949069	21	1.9	21	89	5	62	43	0	0	56	0.99
11949031--11949082	21	2.5	21	78	9	54	44	0	0	55	0.99
11949082--11949122	20	2.0	21	85	4	57	51	0	0	48	1.00
11950222--11950276	27	2.0	27	82	6	67	43	3	0	52	1.18
11955217--11955495	129	2.1	129	83	3	346	30	26	22	20	1.98
11955152--11955495	131	2.6	131	81	3	399	28	25	22	23	1.99
11956375--11956411	7	5.4	7	84	15	51	45	16	13	24	1.83
11957013--11957066	27	2.0	27	88	0	81	33	1	9	55	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106