genome.fa.s57.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  97  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20528671--20528713	22	2.0	22	95	0	77	51	23	0	25	1.49
20530090--20530117	13	2.2	13	100	0	56	28	7	7	57	1.52
20532874--20532913	21	1.9	21	85	10	55	32	2	12	52	1.52
20532893--20532958	15	4.8	13	73	12	51	39	0	10	50	1.37
20532934--20533129	3	66.3	3	74	12	147	33	5	3	58	1.37
20532911--20533129	59	3.7	60	78	10	175	34	4	4	56	1.40
20534131--20534169	15	2.6	15	84	11	53	53	10	2	33	1.48
20540026--20540121	31	3.1	31	87	0	129	29	6	15	48	1.69
20554108--20554143	18	1.9	19	88	5	56	11	11	0	77	0.99
20554530--20554562	14	2.2	16	89	10	52	57	0	0	42	0.98
20554603--20554632	14	2.1	14	93	0	51	33	0	0	66	0.92
20556123--20556161	9	4.1	9	83	9	51	43	5	2	48	1.38
20560101--20560168	33	2.1	33	100	0	136	35	5	17	41	1.74
20569602--20569650	23	2.1	24	84	3	64	40	2	2	55	1.23
20570889--20570923	18	1.9	18	94	0	61	37	2	11	48	1.54
20572150--20572255	53	2.0	53	81	7	126	47	8	11	33	1.70
20576178--20576244	34	2.0	34	82	5	82	55	0	2	41	1.15
20594684--20594709	12	2.2	12	100	0	52	7	15	15	61	1.55
20597745--20597785	15	2.9	15	79	17	52	46	0	0	53	1.00
20599759--20599802	19	2.3	19	84	4	52	68	2	0	29	1.02
20603993--20604022	3	10.0	3	100	0	60	33	0	0	66	0.92
20610936--20610968	12	2.8	12	90	9	50	60	0	3	36	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20613143--20613217	27	2.9	27	84	7	84	58	0	0	41	0.98
20613193--20613236	20	2.1	22	79	12	56	56	0	2	40	1.11
20616566--20616618	8	6.1	8	81	12	52	79	0	16	3	0.88
20616914--20616943	2	15.0	2	92	0	51	46	0	0	53	1.00
20617187--20617214	2	14.0	2	100	0	56	50	0	0	50	1.00
20618017--20618067	26	2.0	26	84	3	68	37	0	1	60	1.08
20618526--20618564	2	19.5	2	91	0	51	41	0	2	56	1.13
20618626--20618692	29	2.3	30	82	12	86	28	0	5	65	1.16
20618761--20618833	29	2.5	29	84	6	94	49	2	9	38	1.50
20618752--20618833	30	2.8	30	83	5	96	50	2	10	36	1.51
20618761--20618846	29	3.0	28	77	6	91	54	2	8	34	1.43
20619526--20619670	70	2.0	72	86	6	204	57	12	2	28	1.47
20622572--20622600	14	2.1	14	93	6	51	51	3	0	44	1.18
20627567--20627597	16	2.0	15	93	6	53	32	3	6	58	1.40
20633218--20633247	2	15.5	2	93	6	53	53	0	0	46	1.00
20635993--20636022	2	15.5	2	93	6	53	50	50	0	0	1.00
20637043--20637079	2	18.5	2	100	0	74	51	0	0	48	1.00
20637247--20637290	15	2.7	17	77	22	58	47	4	0	47	1.22
20637247--20637340	28	3.1	29	76	16	84	46	3	1	48	1.25
20638491--20638520	5	6.2	5	92	7	53	0	20	0	80	0.72
20638494--20638520	14	1.9	14	100	0	54	0	18	0	81	0.69
20646598--20646623	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20649176--20649224	3	16.3	3	95	0	89	67	0	2	30	1.02
20653210--20653240	15	2.1	15	100	0	62	25	6	41	25	1.79
20653580--20653628	25	2.0	25	91	0	80	26	22	12	38	1.89
20657548--20657588	22	1.9	22	90	5	66	70	0	0	29	0.87
20658862--20658888	12	2.2	12	100	0	54	59	0	0	40	0.98
20660050--20660093	23	1.9	23	81	9	54	56	9	9	25	1.59
20661818--20661851	14	2.4	14	90	0	50	52	5	5	35	1.50
20662272--20662297	2	13.0	2	100	0	52	50	0	0	50	1.00
20672209--20672242	2	17.0	2	100	0	68	50	0	50	0	1.00
20682540--20682606	34	2.0	34	84	0	89	38	1	7	52	1.39
20682982--20683031	22	2.2	22	82	10	57	34	10	0	56	1.33
20686996--20687042	20	2.3	20	96	0	85	53	31	0	14	1.42
20693196--20693254	11	4.8	12	76	14	57	18	1	5	74	1.09
20694233--20694281	8	6.4	8	88	6	75	75	2	0	22	0.90
20700441--20700471	8	3.8	8	95	4	53	90	0	0	9	0.46
20700441--20700471	9	3.6	9	91	8	55	90	0	0	9	0.46
20700425--20700498	17	4.4	17	72	19	57	79	0	13	6	0.91
20701287--20701330	23	1.9	23	85	0	61	45	4	22	27	1.72
20701536--20701580	20	2.2	20	88	4	63	35	13	11	40	1.80
20701630--20701725	21	4.6	21	84	2	104	40	11	11	36	1.77
20702164--20702583	42	9.9	42	82	6	456	24	10	16	47	1.79
20702164--20702570	124	3.2	126	83	7	457	24	10	16	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20702164--20702583	86	5.0	84	81	6	449	24	10	16	47	1.79
20702166--20702597	166	2.6	165	82	5	440	24	10	16	47	1.79
20703984--20704028	17	2.7	16	82	6	54	80	0	2	17	0.82
20703984--20704029	8	5.6	8	87	5	65	78	0	2	19	0.86
20705071--20705105	18	2.1	18	89	10	56	5	22	0	71	1.07
20705286--20705315	13	2.4	12	94	5	51	33	0	6	60	1.23
20705245--20705940	158	4.5	158	85	3	828	25	7	14	53	1.66
20707270--20707302	17	1.9	17	93	0	57	12	18	15	54	1.71
20707785--20708009	121	1.9	122	80	2	274	35	9	10	44	1.72
20710955--20711001	19	2.6	18	90	9	78	85	6	4	4	0.84
20711104--20711155	25	2.1	25	85	3	70	82	0	1	15	0.75
20711119--20711155	18	2.0	19	89	5	58	86	0	2	10	0.67
20711115--20711147	7	4.9	7	96	3	59	87	0	0	12	0.53
20711630--20711744	7	16.4	7	100	0	230	71	0	0	28	0.86
20713476--20713524	25	2.0	25	87	0	71	69	0	0	30	0.89
20713480--20713531	13	3.5	14	76	20	52	75	0	0	25	0.81
20713823--20713858	17	2.1	17	94	0	63	77	0	8	13	0.98
20714493--20714556	27	2.4	28	84	5	87	29	3	6	60	1.36
20714824--20714853	13	2.3	13	94	0	51	86	3	0	10	0.67
20715014--20715110	31	3.1	30	78	8	86	50	6	6	37	1.53
20717271--20717360	33	2.8	33	77	9	98	30	1	4	64	1.20
20717267--20717345	29	2.7	30	84	7	99	30	1	1	67	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20720651--20720773	32	3.9	31	70	7	104	44	4	3	47	1.40
20720748--20720794	21	2.3	20	85	3	58	53	0	8	38	1.32
20721661--20721717	20	2.5	22	84	15	73	52	0	0	47	1.00
20721656--20721717	13	5.3	13	74	20	57	51	0	0	48	1.00
20731562--20731605	22	2.0	22	95	0	79	43	13	11	31	1.80
20735454--20735497	22	2.0	22	95	0	79	43	13	11	31	1.80
20736818--20737048	116	2.0	116	93	0	399	21	20	22	35	1.96
20737560--20737790	103	2.2	102	74	6	214	40	8	8	43	1.64
20737934--20737986	22	2.5	21	81	3	61	54	5	1	37	1.35
20738156--20738234	21	3.9	20	80	5	79	77	3	3	15	1.06
20738176--20738243	12	5.3	12	78	18	57	79	4	5	10	1.04
20738189--20738247	24	2.4	25	80	5	68	79	5	6	8	1.04
20739915--20739982	22	3.0	22	78	8	57	57	4	2	35	1.34
20741043--20741080	17	2.2	17	86	9	51	57	0	5	36	1.21
20743609--20743670	27	2.3	27	88	2	99	20	6	38	33	1.79
20745742--20745784	21	2.0	21	90	0	68	67	23	0	9	1.19
20746145--20746186	21	2.0	22	85	4	59	7	16	2	73	1.15
20746145--20746186	22	2.0	21	85	4	57	7	16	2	73	1.15
20746223--20746261	12	3.2	12	92	0	60	61	7	2	28	1.37
20746228--20746283	18	3.2	18	79	2	60	62	7	3	26	1.38
20746239--20746283	18	2.6	18	85	3	65	62	6	4	26	1.39
20754349--20754390	21	2.0	21	85	4	57	59	11	11	16	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20755391--20755445	20	2.7	21	74	23	55	34	0	0	65	0.93
20755826--20755853	1	28.0	1	100	0	56	100	0	0	0	0.00
20756284--20756350	29	2.4	27	76	13	64	53	0	0	46	1.00
20780954--20781031	27	2.8	28	84	3	104	37	7	19	35	1.80
20783449--20783477	15	1.9	15	100	0	58	34	10	20	34	1.87
20787875--20787939	26	2.6	26	85	4	80	47	13	18	20	1.82
20788159--20788202	22	2.0	22	86	8	63	40	6	13	38	1.71
20792665--20792692	2	14.0	2	100	0	56	50	0	0	50	1.00
20806517--20806562	21	2.1	22	92	4	76	52	0	6	41	1.27
20815018--20815050	2	16.5	2	93	0	57	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106