genome.fa.s57.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  68  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12380113--12380297	51	3.5	51	73	15	158	49	6	14	29	1.68
12380086--12380401	109	2.8	111	82	7	358	50	7	13	28	1.68
12384335--12384368	18	1.9	17	94	5	59	76	2	11	8	1.12
12385789--12386051	51	5.0	50	71	19	189	53	6	11	27	1.62
12385782--12386051	108	2.6	102	83	10	316	54	6	11	27	1.62
12387049--12387084	3	12.3	3	94	5	65	66	0	0	33	0.92
12387049--12387085	14	2.6	14	95	4	65	64	0	0	35	0.94
12388699--12388736	3	12.7	3	94	0	67	68	2	0	28	1.03
12391658--12391690	12	2.8	12	100	0	66	42	15	27	15	1.86
12397333--12397377	21	2.0	22	83	8	56	40	4	11	44	1.60
12403200--12403254	22	2.4	24	82	11	71	56	0	0	43	0.99
12405022--12405082	26	2.5	24	81	10	70	50	0	0	49	1.00
12405218--12405251	17	1.9	18	94	5	61	70	0	0	29	0.87
12407583--12407655	25	3.3	22	81	12	71	57	12	2	27	1.49
12407583--12407636	25	2.2	25	86	0	72	59	12	1	25	1.44
12408183--12408216	13	2.4	15	90	9	54	61	8	0	29	1.26
12409102--12409149	23	2.2	21	88	7	69	58	0	2	39	1.10
12412009--12412048	14	3.0	14	80	20	50	57	0	0	42	0.98
12412149--12412330	69	2.5	71	80	10	183	44	3	4	46	1.43
12412608--12412637	14	2.1	14	93	0	51	26	0	0	73	0.84
12412491--12412891	199	2.0	199	96	0	741	44	5	7	42	1.55
12412807--12412836	14	2.1	14	93	0	51	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12412846--12413002	62	2.5	59	73	10	134	49	5	8	37	1.55
12414624--12414662	18	2.1	18	85	4	51	33	0	0	66	0.92
12417698--12417743	18	2.6	18	86	6	67	26	4	2	67	1.21
12419071--12419131	26	2.3	27	86	13	83	16	1	9	72	1.19
12420781--12420815	17	2.1	17	89	5	54	28	2	11	57	1.48
12420798--12420959	21	7.8	21	70	10	100	33	7	12	46	1.69
12420884--12420924	20	2.1	19	86	4	55	36	9	14	39	1.79
12420914--12420955	22	1.9	22	85	0	57	38	7	9	45	1.64
12421102--12421157	21	2.5	22	91	8	87	82	12	0	5	0.83
12422204--12422279	33	2.3	32	76	14	84	35	3	2	57	1.31
12422316--12422367	17	2.9	18	85	8	70	65	7	1	25	1.30
12422318--12422364	20	2.4	20	85	3	60	65	8	2	23	1.31
12422768--12422844	13	5.5	13	74	17	64	49	28	0	22	1.50
12422768--12422861	29	3.2	29	86	0	134	47	31	0	20	1.50
12422835--12422901	35	1.9	35	87	0	98	50	34	0	14	1.44
12422864--12422953	44	2.0	44	84	0	117	50	30	2	17	1.59
12422864--12422917	14	3.7	14	78	9	63	51	31	1	14	1.53
12422973--12423008	16	2.4	16	90	9	58	41	22	5	30	1.76
12423018--12423079	16	4.1	16	74	12	51	54	25	1	17	1.52
12424563--12424657	22	4.4	22	77	7	61	41	6	5	47	1.51
12424576--12424735	22	7.4	21	73	9	99	36	7	8	47	1.63
12424621--12424757	22	6.3	22	70	8	73	37	10	10	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12424700--12424806	52	2.1	52	83	3	135	39	10	7	42	1.67
12424823--12424866	21	2.3	18	84	11	52	31	13	2	52	1.53
12427906--12427965	14	4.3	14	75	8	50	18	3	3	75	1.09
12427909--12427974	25	2.7	24	78	17	73	16	4	4	74	1.16
12428100--12428131	17	1.9	17	93	6	57	25	3	18	53	1.59
12431142--12431338	59	3.3	59	84	5	279	38	7	5	49	1.53
12432314--12432377	21	3.0	21	77	11	67	65	3	6	25	1.31
12432307--12432372	22	3.0	21	78	12	71	65	3	6	25	1.30
12432328--12432369	17	2.3	18	84	8	50	66	0	4	28	1.12
12432675--12432870	42	4.7	41	86	5	243	39	20	16	23	1.92
12432664--12432870	41	5.0	41	86	7	258	38	20	15	24	1.92
12432631--12432870	83	2.8	85	85	6	335	41	20	15	23	1.90
12432631--12432912	42	6.6	42	81	9	146	41	20	15	22	1.90
12441040--12441076	15	2.5	15	86	0	56	51	5	21	21	1.68
12444209--12444347	60	2.3	61	87	3	192	35	7	5	51	1.54
12444272--12444424	78	2.0	76	86	7	211	35	6	5	51	1.52
12444333--12444365	17	1.9	17	100	0	66	30	0	9	60	1.27
12444339--12444487	59	2.5	59	85	6	210	38	6	5	49	1.52
12444215--12444480	138	1.9	136	86	8	380	35	7	4	51	1.52
12445380--12445454	22	3.5	21	80	12	73	65	2	5	26	1.27
12445418--12445473	3	17.7	3	82	10	67	66	0	3	30	1.09
12449498--12449541	17	2.6	18	82	10	56	20	4	0	75	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12452146--12452225	31	2.6	31	78	11	94	51	0	2	46	1.14
12452324--12452394	29	2.4	29	83	9	90	40	5	1	52	1.34
12454560--12454589	2	15.0	2	100	0	60	50	0	0	50	1.00
12457261--12457290	2	15.0	2	100	0	60	50	0	0	50	1.00
12462466--12462533	17	4.2	16	83	16	88	19	7	1	72	1.16
12462474--12462520	14	3.1	14	83	16	67	19	8	0	72	1.10
12462466--12462554	32	2.9	31	76	16	96	21	6	1	70	1.16
12463074--12463102	14	2.0	15	93	6	51	65	0	34	0	0.93
12463370--12463402	8	4.2	8	92	3	50	30	0	3	66	1.06
12463346--12463388	20	2.2	20	83	8	52	18	0	2	79	0.85
12463462--12463512	13	3.8	13	78	19	59	15	5	0	78	0.93
12463521--12463985	58	7.7	58	77	11	386	44	6	11	37	1.66
12463513--12463987	64	7.9	58	78	8	429	45	6	11	37	1.65
12463978--12464038	24	2.5	24	97	0	113	34	13	3	49	1.58
12468587--12468891	42	7.2	42	79	8	262	29	15	18	37	1.91
12468553--12468886	167	2.0	169	83	5	419	28	15	17	38	1.91
12468599--12468939	42	8.0	44	77	9	178	27	15	17	39	1.90
12469225--12469269	23	1.9	24	90	4	74	24	6	0	68	1.13
12469191--12469326	32	4.0	33	73	15	100	24	5	0	69	1.16
12469223--12469275	23	2.3	22	81	9	70	22	5	0	71	1.06
12469184--12469305	17	7.2	16	73	14	77	22	4	0	72	1.04
12470020--12470056	14	2.6	15	83	12	51	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12470107--12470142	16	2.2	17	90	5	56	13	8	0	77	0.98
12470091--12470141	26	1.9	27	92	4	86	15	9	0	74	1.06
12470080--12470152	6	12.0	6	71	17	53	17	6	0	75	1.02
12470080--12470157	38	2.0	39	82	7	97	17	7	0	74	1.05
12470170--12470695	60	8.8	61	80	8	442	44	5	9	40	1.62
12470173--12470695	120	4.4	119	80	8	539	44	5	9	39	1.62
12470521--12470545	13	1.9	13	100	0	50	64	4	0	32	1.12
12471706--12471754	22	2.2	22	96	0	89	16	16	10	57	1.65
12472769--12472825	5	10.8	5	94	1	69	52	0	3	43	1.18
12472769--12472826	2	30.5	2	77	22	63	51	0	3	44	1.18
12473015--12473040	2	13.0	2	100	0	52	50	0	0	50	1.00
12477245--12477280	2	18.0	2	94	0	63	47	0	0	52	1.00
12480448--12480513	26	2.5	27	82	9	91	54	1	3	40	1.25
12480607--12480649	3	15.0	3	85	4	54	25	0	0	74	0.82
12480729--12480781	13	3.9	13	82	12	63	45	1	0	52	1.11
12484044--12484076	12	2.8	12	95	0	57	9	12	36	42	1.74
12491905--12491929	3	8.3	3	100	0	50	32	36	0	32	1.58
12493665--12493692	2	14.0	2	100	0	56	50	0	50	0	1.00
12494074--12494125	15	3.6	14	86	5	68	0	34	0	65	0.93
12494074--12494125	10	5.3	10	86	4	70	0	34	0	65	0.93
12494559--12494609	16	3.1	16	86	13	68	56	5	0	37	1.23
12494970--12495023	27	2.0	27	85	7	74	42	1	1	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12495952--12495991	19	2.0	20	85	4	55	50	0	10	40	1.36
12497197--12497309	18	6.8	17	72	19	71	53	2	0	42	1.20
12497223--12497300	23	3.1	24	82	12	86	53	2	0	43	1.14
12497181--12497332	38	3.8	40	75	16	129	54	2	0	42	1.19
12497211--12497345	67	2.0	68	88	4	202	57	2	0	40	1.14
12497229--12497345	11	10.9	10	68	24	53	58	2	0	39	1.12
12497418--12497458	16	2.7	15	85	7	55	48	2	0	48	1.14
12497428--12497495	25	2.7	26	88	8	104	51	1	0	47	1.09
12497428--12497495	26	2.7	26	90	4	104	51	1	0	47	1.09
12497418--12497483	15	4.5	16	70	24	56	48	1	0	50	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106