genome.fa.s57.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  94  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19860993--19861052	3	20.0	3	89	0	93	61	3	35	0	1.12
19864149--19864183	17	2.1	17	94	0	61	51	0	0	48	1.00
19864165--19864207	11	3.7	11	78	9	50	58	2	0	39	1.11
19865565--19865735	90	1.9	89	89	1	261	33	14	9	42	1.78
19865923--19865952	15	2.0	15	93	0	51	23	0	20	56	1.42
19866107--19866161	27	2.0	28	89	3	85	54	9	3	32	1.49
19871449--19871486	20	1.9	20	88	0	58	50	0	2	47	1.15
19871814--19871929	21	5.4	21	77	4	72	37	6	6	49	1.54
19872016--19872193	22	8.1	22	77	0	122	38	8	6	47	1.59
19872016--19872186	44	3.9	43	76	4	146	38	8	6	46	1.61
19872034--19872193	66	2.4	66	77	0	167	38	8	5	47	1.58
19872215--19872287	22	3.3	22	75	7	67	36	5	10	46	1.62
19872237--19872300	22	2.9	22	77	9	51	40	7	7	43	1.62
19872303--19872418	22	5.3	22	78	6	92	38	6	4	50	1.49
19872293--19872416	44	2.8	43	74	6	113	39	8	4	48	1.52
19872452--19872504	22	2.4	22	84	6	63	43	15	1	39	1.57
19872503--19872591	22	4.1	22	77	9	76	37	6	5	50	1.52
19872648--19872772	67	1.9	66	85	8	173	38	6	5	49	1.52
19872714--19872783	22	3.2	22	81	0	86	37	8	4	50	1.53
19873199--19873710	22	23.7	22	68	9	151	36	6	3	52	1.46
19873205--19873696	44	11.4	43	69	12	170	36	6	3	53	1.45
19873628--19873746	44	2.8	44	81	2	143	36	7	5	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19873634--19873690	11	5.2	11	78	0	60	38	5	3	52	1.41
19873854--19873920	22	3.1	22	77	14	68	38	8	4	47	1.55
19875561--19875614	5	10.6	5	77	18	58	81	1	1	14	0.86
19875561--19875615	11	5.3	10	82	12	67	81	1	1	14	0.85
19875565--19875613	25	1.9	27	88	12	77	81	2	2	14	0.87
19875647--19875689	7	6.3	7	82	12	54	69	0	2	27	1.00
19876859--19877296	42	10.5	41	80	10	367	40	19	13	27	1.89
19876840--19877300	82	5.5	82	80	8	463	39	19	13	27	1.89
19879021--19879065	22	2.0	22	86	0	63	4	13	2	80	0.97
19879028--19879073	22	2.1	22	83	0	56	2	17	2	78	0.96
19879428--19879474	24	2.0	24	82	0	58	10	19	2	68	1.30
19883091--19883359	114	2.3	114	89	4	398	36	13	7	42	1.72
19883089--19883359	58	4.7	58	89	3	397	36	13	7	42	1.73
19883377--19883414	12	3.5	11	89	7	51	76	0	0	23	0.79
19883426--19883465	3	13.0	3	89	5	62	65	0	2	32	1.06
19884282--19884325	12	3.6	12	87	3	61	79	2	2	15	0.93
19884609--19884638	15	1.9	16	93	6	53	46	0	0	53	1.00
19885452--19885682	124	1.8	126	84	1	313	36	13	9	40	1.77
19886549--19886632	38	2.3	38	87	8	129	53	7	1	38	1.36
19890080--19890134	24	2.3	24	93	0	92	41	12	18	27	1.86
19891011--19891115	52	2.0	52	88	0	156	29	21	5	42	1.76
19891917--19892020	52	2.0	52	90	0	163	30	21	5	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19900551--19900597	2	23.0	2	82	4	58	46	0	2	51	1.13
19900555--19900589	18	1.9	18	100	0	70	48	0	0	51	1.00
19900590--19900639	25	1.9	26	88	8	75	52	0	6	42	1.26
19904854--19904928	30	2.5	30	86	0	96	56	2	5	36	1.36
19905351--19905380	2	15.0	2	92	0	51	46	0	3	50	1.18
19918594--19918709	6	19.5	6	74	13	64	18	4	1	75	1.05
19918648--19918709	21	3.0	21	80	15	76	16	1	1	80	0.87
19918594--19918693	9	11.1	9	69	17	57	19	4	2	75	1.07
19918594--19918707	9	12.9	8	71	21	54	17	4	1	76	1.04
19919603--19919634	12	2.7	12	90	0	55	25	25	34	15	1.95
19919724--19919750	13	2.1	13	100	0	54	22	0	0	77	0.76
19919723--19919837	18	6.4	18	70	19	64	20	3	3	73	1.13
19919774--19919838	11	6.4	10	82	12	53	13	4	1	80	0.95
19919773--19919850	6	13.7	6	71	15	58	14	6	1	78	1.01
19919785--19919838	18	3.1	18	83	2	74	12	3	1	81	0.91
19919813--19919856	16	2.9	15	83	12	54	15	6	2	75	1.12
19919894--19919985	27	3.2	27	64	24	71	39	7	16	36	1.77
19919885--19920159	58	4.7	58	83	8	344	45	6	12	35	1.68
19919865--19920159	117	2.5	117	84	5	384	45	6	11	36	1.66
19919904--19920059	32	5.2	31	62	21	91	44	8	12	33	1.73
19926847--19926882	15	2.3	15	90	4	54	77	0	13	8	0.98
19926822--19926882	31	1.9	31	83	9	79	72	0	16	11	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19926847--19926882	8	4.6	8	89	6	56	77	0	13	8	0.98
19927885--19928019	41	3.3	41	86	4	200	25	14	22	37	1.93
19928289--19928451	12	13.1	12	70	16	84	23	3	2	69	1.16
19928336--19928455	3	38.7	3	73	12	66	26	1	2	69	1.11
19929427--19929491	11	6.4	10	82	12	53	13	4	1	80	0.95
19929426--19929503	6	13.7	6	71	15	58	14	6	1	78	1.01
19929426--19929484	17	3.4	16	77	11	55	13	5	1	79	0.97
19929438--19929491	18	3.1	18	83	2	74	12	3	1	81	0.91
19929466--19929509	16	2.9	15	83	12	54	15	6	2	75	1.12
19929537--19929866	57	5.7	57	82	11	379	44	6	12	36	1.68
19929537--19929866	176	1.9	172	85	7	450	44	6	12	36	1.68
19933904--19933956	14	3.6	14	72	22	54	49	1	0	49	1.12
19933904--19933965	31	2.1	28	82	11	72	51	1	0	46	1.10
19934000--19934065	28	2.4	28	81	0	87	43	0	4	51	1.22
19935878--19935905	2	14.0	2	100	0	56	50	0	0	50	1.00
19945852--19945889	16	2.4	16	86	0	58	31	15	13	39	1.86
19949847--19949912	32	2.0	33	82	8	82	46	1	0	51	1.10
19950122--19950148	2	13.5	2	100	0	54	0	48	0	51	1.00
19958370--19958410	18	2.3	18	88	12	59	60	0	17	21	1.35
19960130--19960158	9	3.3	9	95	4	51	51	10	0	37	1.36
19963091--19963120	2	15.0	2	100	0	60	0	50	0	50	1.00
19965549--19965584	17	2.1	18	94	5	65	66	0	16	16	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19965919--19965957	21	1.9	20	89	5	60	56	2	0	41	1.13
19967024--19967062	2	19.5	2	83	0	51	46	2	2	48	1.29
19967020--19967062	14	3.1	14	86	0	59	46	4	2	46	1.36
19970969--19971091	64	1.9	64	86	4	178	37	13	14	34	1.85
19976120--19976157	19	2.0	20	84	5	51	52	5	0	42	1.24
19977200--19977226	2	13.5	2	100	0	54	0	51	0	48	1.00
19979743--19979793	21	2.5	21	96	3	95	49	0	0	50	1.00
19979781--19979837	16	3.7	16	75	13	57	64	0	0	35	0.93
19979759--19979829	30	2.3	30	78	2	79	59	0	0	40	0.98
19979783--19979867	24	3.4	25	75	15	86	61	0	0	38	0.96
19983351--19983388	16	2.4	17	82	13	53	13	7	5	73	1.22
19988615--19988809	64	3.0	64	90	0	300	37	15	14	32	1.88
19991975--19992004	2	15.0	2	92	0	51	0	53	0	46	1.00
19994693--19994771	22	3.5	23	77	16	69	48	1	0	50	1.08
20000348--20000390	22	1.9	22	86	13	61	53	0	0	46	1.00
20000322--20000399	40	2.0	38	85	5	102	47	2	3	46	1.34
20001859--20001895	18	2.2	18	85	9	51	43	0	2	54	1.14
20007507--20007532	2	13.0	2	100	0	52	50	0	0	50	1.00
20011315--20011347	14	2.3	15	89	5	50	33	3	6	57	1.38
20011274--20011384	57	1.9	57	87	7	163	42	1	3	52	1.29
20011152--20011645	270	1.8	268	86	5	710	39	9	5	45	1.59
20011539--20011750	57	3.7	57	72	16	179	39	6	3	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20011907--20012047	58	2.4	58	83	1	156	44	6	2	46	1.43
20012090--20012137	18	2.7	18	77	6	53	39	0	4	56	1.19
20020559--20020592	9	3.8	9	100	0	68	58	8	32	0	1.29
20035755--20035780	5	5.2	5	100	0	52	80	0	0	19	0.71
20046503--20046530	2	14.0	2	100	0	56	50	0	0	50	1.00
20046881--20046922	8	5.0	8	81	18	50	28	0	0	71	0.86
20050010--20050072	31	2.0	31	82	11	76	47	0	1	50	1.10
20050132--20050172	22	1.9	22	85	5	57	31	0	0	68	0.90
20051791--20051844	2	27.5	2	84	3	74	50	0	5	44	1.25
20056102--20056143	21	2.0	21	100	0	84	28	14	14	42	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106