genome.fa.s57.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  33  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6185291--6185342	13	4.0	13	76	16	54	69	1	28	0	0.99
6185574--6185632	20	2.8	22	73	17	54	49	1	0	49	1.11
6187284--6187328	2	22.5	2	88	0	63	44	4	2	48	1.35
6188325--6188419	47	2.0	47	91	4	156	31	11	17	38	1.86
6193683--6193760	31	2.5	31	77	8	86	37	6	12	43	1.69
6193717--6193791	31	2.4	30	80	12	73	40	5	8	46	1.56
6198075--6198104	2	15.0	2	100	0	60	50	0	0	50	1.00
6199875--6199925	13	3.9	13	75	17	52	19	0	3	76	0.94
6199881--6199928	21	2.4	20	82	6	62	20	0	4	75	0.97
6202380--6202424	17	2.6	18	92	7	83	33	24	15	26	1.95
6209211--6209251	19	2.2	19	91	4	66	80	2	2	14	0.92
6210034--6210089	18	3.1	18	74	7	51	57	7	0	35	1.26
6210034--6210137	48	2.2	48	80	8	117	59	6	0	32	1.30
6210321--6210488	64	2.6	63	77	8	187	45	13	23	17	1.84
6210540--6210682	63	2.3	63	85	2	198	45	13	23	17	1.84
6210608--6210962	119	2.9	118	80	6	381	44	13	21	20	1.85
6211942--6211998	28	2.1	26	80	9	60	8	8	8	73	1.25
6212022--6212145	66	1.9	66	81	3	151	16	17	8	57	1.64
6212021--6212159	66	2.1	66	78	5	147	14	17	7	60	1.57
6214934--6215004	37	1.9	37	82	5	90	61	5	12	19	1.50
6217868--6218009	43	3.3	43	81	4	169	29	12	11	46	1.77
6217910--6218230	43	7.4	43	76	5	211	27	12	11	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6217868--6218104	87	2.8	86	80	3	226	27	11	11	48	1.74
6217997--6218158	85	1.9	86	88	1	245	25	11	11	51	1.71
6217997--6218230	85	2.7	84	80	10	219	25	11	11	50	1.73
6217994--6218230	128	1.8	129	82	7	302	25	12	12	49	1.75
6219223--6219258	4	8.8	4	87	6	54	25	0	2	72	0.98
6219224--6219258	17	2.1	17	94	0	61	22	0	2	74	0.95
6219545--6219602	26	2.3	23	78	16	62	46	6	6	39	1.57
6222436--6222493	28	2.2	26	85	14	75	44	0	0	55	0.99
6222446--6222505	28	2.2	27	88	8	86	48	0	0	51	1.00
6222597--6222828	73	3.2	73	63	19	185	40	6	4	47	1.51
6222604--6222897	147	2.0	147	97	0	561	38	7	5	48	1.56
6222932--6222989	24	2.6	23	81	10	68	37	5	10	46	1.60
6223163--6223191	12	2.3	13	94	5	51	31	0	10	58	1.31
6224456--6224584	56	2.3	57	80	6	147	64	10	6	18	1.46
6224483--6224589	56	1.9	56	86	3	153	64	12	5	17	1.45
6228437--6228461	13	1.9	13	100	0	50	32	0	0	68	0.90
6228738--6229078	168	2.0	168	98	0	655	42	17	12	27	1.86
6232696--6232858	84	1.9	84	81	4	195	26	13	19	39	1.89
6239956--6240002	7	6.9	7	80	4	51	40	2	0	57	1.11
6239956--6240000	20	2.2	20	92	0	72	40	2	0	57	1.11
6240648--6240740	32	2.8	33	87	11	127	47	0	2	50	1.13
6244808--6244841	17	1.9	18	94	5	61	44	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6244975--6245041	33	2.0	33	97	0	125	17	19	0	62	1.33
6246144--6246375	28	8.5	28	67	20	129	51	0	1	45	1.17
6246242--6246375	5	26.2	5	69	20	64	52	1	0	45	1.15
6246317--6246390	23	3.2	22	78	17	71	50	1	2	45	1.24
6246130--6246395	102	2.6	102	81	13	262	50	0	1	46	1.17
6246197--6246432	53	4.4	52	71	19	150	49	0	2	47	1.22
6246644--6246682	19	2.1	19	90	0	60	82	7	2	7	0.94
6249745--6249778	8	4.5	8	85	14	54	76	11	0	11	1.02
6249747--6249779	14	2.4	14	100	0	66	72	12	0	15	1.12
6255916--6255956	18	2.3	17	88	12	64	80	4	7	7	1.02
6255914--6255957	19	2.3	20	84	11	65	79	4	6	9	1.04
6256062--6256086	13	1.9	13	100	0	50	20	8	0	72	1.10
6256034--6256102	32	2.1	33	89	2	104	23	5	0	71	1.08
6256622--6256656	15	2.3	15	90	0	52	14	8	31	45	1.75
6256763--6256820	21	2.8	21	75	0	62	22	17	13	46	1.83
6258647--6258693	17	2.9	16	78	12	51	31	19	4	44	1.70
6261841--6261879	20	2.0	20	84	0	51	38	15	17	28	1.91
6262137--6262233	41	2.4	40	89	6	151	23	12	19	44	1.85
6262132--6262260	41	3.2	41	83	5	120	23	12	24	40	1.89
6267849--6267941	8	10.3	9	69	26	56	75	2	12	9	1.13
6267841--6267941	41	2.5	39	79	7	105	74	1	14	8	1.15
6267842--6267933	23	3.9	24	73	9	73	76	2	13	8	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6267898--6267940	17	2.6	17	85	7	54	81	0	9	9	0.88
6268620--6268842	79	2.8	79	78	3	270	34	10	25	29	1.89
6269290--6269701	46	9.5	46	72	16	228	37	10	15	36	1.82
6269295--6269676	67	6.0	64	74	15	258	37	9	15	36	1.81
6269295--6269644	113	3.2	110	79	10	387	38	9	15	36	1.81
6269523--6269640	21	5.5	21	75	8	85	40	10	16	33	1.82
6269559--6269640	42	2.0	42	83	9	105	40	9	17	32	1.82
6270132--6270227	43	2.2	43	88	5	140	22	10	19	46	1.80
6270132--6270260	43	3.0	45	83	9	137	24	12	19	43	1.85
6278678--6278945	144	1.9	142	78	10	296	31	11	14	42	1.81
6279338--6279378	22	1.9	21	90	5	64	26	26	0	46	1.53
6280129--6280217	44	2.0	44	100	0	178	31	15	4	48	1.65
6280327--6280401	14	5.4	14	72	12	55	42	25	2	29	1.68
6280333--6280403	21	3.4	21	78	0	79	40	25	2	30	1.70
6280381--6280440	24	2.5	24	83	0	75	38	31	1	28	1.67
6282219--6282262	21	2.2	20	87	4	61	65	0	4	29	1.12
6282321--6282360	18	2.2	18	90	0	62	80	7	10	2	1.00
6283557--6283593	19	2.0	18	94	5	65	72	0	0	27	0.84
6283975--6284015	19	2.2	19	95	0	73	41	24	9	24	1.85
6284026--6284081	19	2.9	19	83	0	67	39	25	14	21	1.91
6287296--6287455	87	1.8	88	95	1	295	43	6	16	33	1.74
6289655--6289726	19	3.9	18	75	18	60	84	8	5	1	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6289655--6289694	13	3.2	13	86	6	57	87	12	0	0	0.54
6289655--6289731	16	4.9	15	72	15	66	84	7	6	1	0.83
6289734--6289917	96	1.9	97	81	1	226	52	9	11	26	1.67
6290327--6290371	9	5.1	8	87	12	54	86	0	13	0	0.57
6290329--6290385	18	3.1	18	85	9	78	84	0	15	0	0.63
6290329--6290374	10	4.8	10	89	5	69	86	0	13	0	0.56
6290329--6290382	20	2.8	19	81	8	65	83	0	16	0	0.65
6291401--6291494	36	2.6	36	80	6	102	14	15	13	55	1.70
6291442--6291522	36	2.2	36	82	4	92	11	14	16	58	1.64
6291514--6291594	36	2.2	36	84	0	99	17	13	11	58	1.64
6291661--6292926	36	35.0	36	68	9	250	15	13	16	54	1.72
6293054--6293146	9	10.0	9	74	16	66	82	7	3	6	0.92
6293062--6293127	19	3.4	19	75	21	66	83	4	4	7	0.91
6293054--6293146	38	2.5	37	81	18	104	82	7	3	6	0.92
6293056--6293147	25	3.8	24	75	14	82	83	7	3	5	0.89
6293055--6293147	13	7.0	12	74	20	78	83	7	3	5	0.88
6293058--6293173	47	2.6	46	81	13	118	80	9	6	4	1.02
6293055--6293173	46	2.7	44	81	12	120	80	9	5	4	1.00
6293055--6293147	1	93.0	1	68	0	51	83	7	3	5	0.88
6295049--6295090	17	2.5	18	85	11	54	78	0	2	19	0.86
6295182--6295230	27	2.0	23	84	15	62	69	0	2	28	1.00
6313062--6313170	55	2.0	55	94	3	193	33	5	24	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6316331--6316385	20	3.0	17	76	21	58	61	3	16	18	1.48
6316334--6316383	17	2.9	17	80	14	50	62	4	16	18	1.48
6317004--6317065	26	2.3	27	86	8	83	38	19	8	33	1.81
6317072--6317211	48	2.9	47	84	5	163	33	15	10	41	1.80
6317063--6317373	49	6.4	48	79	9	208	35	12	13	38	1.83
6317133--6317378	49	5.0	49	82	6	259	34	14	13	36	1.86
6317201--6317398	49	4.0	49	80	8	129	35	14	15	34	1.87
6319260--6319408	73	2.0	73	92	0	244	28	4	24	41	1.75
6320919--6320968	26	1.9	26	91	0	82	44	2	4	50	1.32
6320961--6321016	17	3.5	17	76	9	64	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106