genome.fa.s57.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  9  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1406122--1406233	51	2.2	51	82	9	131	54	26	0	17	1.49
1406157--1406224	28	2.4	28	85	5	82	54	27	0	17	1.43
1408979--1409017	19	2.1	19	85	9	53	20	0	12	66	1.24
1409112--1409158	22	2.2	21	84	3	58	21	12	4	61	1.48
1409123--1409177	22	2.5	21	85	5	65	23	14	3	58	1.52
1409123--1409187	22	3.0	20	78	17	58	23	12	4	60	1.51
1409461--1409508	25	1.9	25	87	8	71	31	8	18	41	1.80
1409517--1409587	31	2.3	31	80	9	83	28	28	19	23	1.99
1409600--1409643	20	2.2	20	87	0	61	36	31	25	6	1.82
1409609--1409646	20	1.9	20	100	0	76	36	34	21	7	1.82
1409657--1409694	20	1.9	20	94	0	67	31	26	18	23	1.97
1410015--1410053	21	1.9	20	84	5	51	10	0	7	82	0.86
1410185--1410584	60	6.7	60	89	7	565	45	8	13	33	1.74
1410186--1410584	125	3.4	118	87	9	573	44	8	13	33	1.74
1415377--1415447	15	4.7	16	74	11	60	46	30	2	19	1.64
1415393--1415481	29	3.1	28	80	6	92	48	29	3	19	1.65
1415409--1415612	14	14.8	13	65	19	69	47	29	1	21	1.60
1415464--1415507	22	2.0	23	90	4	72	45	36	0	18	1.49
1416336--1416388	5	10.6	5	88	11	74	83	16	0	0	0.66
1417568--1417592	9	2.8	9	100	0	50	20	0	0	80	0.72
1417580--1417629	26	1.9	26	84	8	66	30	0	0	70	0.88
1417848--1417905	27	2.1	27	81	12	66	68	5	1	24	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1417863--1417908	12	3.3	15	74	20	55	67	6	0	26	1.15
1418169--1418234	20	3.2	20	84	6	78	50	28	1	19	1.57
1420042--1420080	18	2.2	19	90	9	64	33	0	2	64	1.08
1421506--1421550	21	2.2	20	92	4	72	62	2	2	33	1.20
1422875--1422925	19	2.7	18	84	6	57	78	5	5	9	1.08
1422892--1422939	25	2.0	24	83	4	60	75	4	8	12	1.18
1425912--1425940	4	7.2	4	100	0	58	75	0	0	24	0.80
1432633--1432666	17	2.0	17	100	0	68	23	29	5	41	1.78
1433506--1433576	29	2.7	26	80	17	85	69	0	1	29	0.98
1433517--1433576	23	2.7	21	80	14	66	70	0	1	28	0.97
1435031--1435057	10	2.7	10	100	0	54	62	7	0	29	1.22
1435105--1435144	10	4.1	10	87	12	57	47	0	2	50	1.14
1435116--1435208	37	2.6	35	81	5	96	61	3	1	34	1.19
1435156--1435225	17	3.9	18	75	18	58	68	4	1	25	1.16
1435115--1435225	9	12.1	9	71	9	64	62	2	1	33	1.20
1435182--1435224	19	2.2	20	87	4	61	74	2	2	20	1.04
1438559--1438604	19	2.4	19	79	13	58	56	6	0	36	1.25
1459461--1459504	21	2.1	21	82	0	52	45	0	4	50	1.22
1459624--1459649	5	5.2	5	100	0	52	80	0	0	19	0.71
1462615--1462655	18	2.3	18	95	0	73	53	7	21	17	1.67
1469124--1469170	12	4.1	12	78	8	53	72	2	2	23	1.06
1469473--1469547	29	2.6	28	83	8	89	52	24	0	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1469503--1469555	14	3.7	14	72	5	52	52	28	0	18	1.46
1469607--1469669	14	4.4	14	78	6	54	50	25	0	23	1.49
1471642--1471683	3	14.0	3	100	0	84	66	0	0	33	0.92
1471748--1471796	3	16.3	3	91	0	80	63	0	4	32	1.13
1471798--1471846	3	16.3	3	95	0	89	32	2	0	65	1.04
1473283--1473317	16	2.2	16	94	0	61	37	5	8	48	1.58
1480600--1480646	22	2.1	22	84	0	58	59	0	0	40	0.97
1481190--1481231	14	3.1	14	80	16	52	42	0	2	54	1.13
1481845--1481898	27	2.0	26	82	10	65	48	3	0	48	1.19
1483519--1483549	2	16.0	2	93	6	55	51	0	0	48	1.00
1483776--1483823	20	2.4	20	82	6	62	52	0	0	47	1.00
1483781--1483824	20	2.3	19	85	11	63	50	0	0	50	1.00
1485527--1485553	2	13.5	2	100	0	54	48	0	0	51	1.00
1487199--1487233	2	17.5	2	100	0	70	51	0	0	48	1.00
1488631--1488668	20	2.0	20	89	5	60	50	0	0	50	1.00
1488732--1488831	53	1.9	51	84	8	130	51	1	4	44	1.27
1489158--1489191	2	17.0	2	87	0	50	44	0	2	52	1.16
1490979--1491040	23	2.7	23	100	0	124	54	9	12	22	1.67
1493095--1493530	190	2.3	193	81	5	519	33	9	13	43	1.75
1494757--1494802	3	15.3	3	100	0	92	34	0	32	32	1.58
1497333--1497493	86	1.9	86	85	5	227	37	16	18	28	1.92
1497350--1497549	86	2.3	86	79	5	226	37	14	19	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1501074--1501472	200	2.0	200	91	1	647	36	12	13	38	1.82
1503050--1503099	20	2.5	19	78	9	55	40	0	2	58	1.10
1504128--1504187	29	2.1	29	81	6	68	40	1	1	56	1.19
1505058--1505098	21	1.9	22	90	5	66	48	7	0	43	1.30
1513884--1513928	22	2.0	22	82	8	54	33	6	13	46	1.69
1519351--1519419	34	2.0	34	94	0	120	30	5	7	56	1.50
1524000--1524025	4	6.5	4	100	0	52	76	23	0	0	0.78
1524031--1524060	6	4.8	6	95	4	51	53	13	16	16	1.73
1526439--1526479	20	2.0	20	85	0	55	58	2	0	39	1.11
1526951--1526992	20	2.1	20	100	0	84	23	0	23	52	1.47
1532826--1532870	17	2.5	19	75	20	51	71	8	6	13	1.31
1552405--1552440	18	2.1	18	90	10	58	38	13	19	27	1.90
1555719--1556342	158	4.0	155	77	8	555	34	8	17	40	1.79
1555734--1556342	157	3.9	158	76	7	565	34	7	17	40	1.78
1558411--1558446	6	5.7	6	87	12	54	63	0	5	30	1.17
1565859--1565946	34	2.6	34	80	3	88	43	7	12	36	1.72
1566181--1566218	17	2.2	18	90	9	62	7	13	0	78	0.94
1567250--1567293	19	2.2	21	88	8	65	54	0	0	45	0.99
1567265--1567313	24	2.0	25	88	4	73	55	0	0	44	0.99
1580462--1580529	36	1.9	35	91	5	111	47	30	2	19	1.64
1580495--1580540	14	3.4	13	80	11	56	50	28	2	19	1.60
1580462--1580537	36	2.1	35	88	7	109	47	30	2	19	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1580501--1580548	14	3.4	14	77	11	53	52	29	2	16	1.56
1580525--1580575	21	2.4	22	83	3	68	52	31	1	13	1.51
1580490--1580555	28	2.4	28	84	0	87	51	31	1	15	1.52
1580497--1580593	28	3.4	29	76	9	78	49	31	2	16	1.57
1581791--1581840	26	1.9	26	83	0	64	24	2	10	64	1.35
1581797--1581847	26	2.0	26	84	0	66	27	1	5	64	1.27
1587258--1587304	20	2.3	20	88	0	76	82	6	6	4	0.92
1587268--1587316	11	4.6	10	80	16	55	83	4	10	2	0.85
1587286--1587315	12	2.4	12	94	5	51	90	3	6	0	0.56
1587258--1587312	20	2.8	19	86	8	65	83	5	7	3	0.89
1587257--1587311	28	2.0	28	82	7	67	81	5	7	5	0.97
1588662--1588769	47	2.3	47	95	0	198	28	18	13	38	1.89
1589490--1589548	22	2.7	22	78	5	66	28	25	18	27	1.98
1589293--1589635	127	2.7	126	83	4	413	33	13	15	36	1.87
1589940--1589995	22	2.5	22	85	2	67	32	19	14	33	1.92
1589747--1589988	109	2.2	110	82	0	306	23	16	18	41	1.90
1589958--1590032	22	3.4	22	81	0	96	26	20	18	34	1.95
1589857--1590147	153	1.9	153	87	2	424	23	17	18	40	1.91
1590092--1590202	22	5.0	22	73	7	64	27	20	18	32	1.97
1589870--1590180	153	2.0	153	83	3	394	23	18	18	38	1.93
1590110--1590207	22	4.5	22	70	10	74	28	21	18	31	1.97
1589939--1590322	175	2.2	174	81	3	450	25	18	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590404--1590490	22	4.0	22	76	0	75	29	22	16	31	1.96
1590187--1590469	131	2.2	130	79	3	291	24	19	17	38	1.92
1590558--1590620	22	2.9	22	78	0	72	31	17	15	34	1.92
1590574--1590840	110	2.4	109	80	1	282	25	19	15	39	1.91
1590447--1590732	132	2.2	131	77	3	295	25	18	15	40	1.90
1590833--1590909	22	3.5	22	72	8	68	27	24	16	31	1.97
1590976--1591018	22	2.0	22	85	0	59	27	20	16	34	1.94
1592736--1592783	22	2.2	22	96	3	89	68	0	10	20	1.18
1592809--1592878	3	23.3	3	88	5	97	64	1	0	34	1.03
1593014--1593100	28	3.1	28	81	6	88	51	29	1	17	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106