genome.fa.s57.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  38  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7081228--7081288	32	1.9	32	86	3	88	39	18	13	29	1.88
7081749--7081801	26	2.0	26	88	0	79	39	22	7	30	1.82
7081930--7082211	125	2.3	122	80	6	300	31	13	15	39	1.86
7082149--7082209	32	1.9	32	82	0	77	31	11	16	40	1.84
7081998--7082243	125	2.0	125	82	0	303	30	13	14	40	1.85
7083600--7083647	21	2.3	21	85	7	62	6	10	2	81	0.95
7087961--7088016	18	3.0	17	80	15	58	3	12	10	73	1.22
7090689--7090723	18	1.9	18	88	0	52	34	25	0	40	1.56
7099507--7099544	6	6.8	6	93	6	55	73	0	0	26	0.83
7099507--7099547	5	7.6	5	97	2	55	75	0	0	24	0.80
7101110--7101146	19	1.9	20	94	5	67	35	5	0	59	1.20
7101151--7101182	10	3.1	11	86	13	50	37	0	0	62	0.95
7101168--7101210	22	2.0	22	86	9	61	41	2	0	55	1.12
7105574--7105602	14	2.0	15	93	6	51	37	0	0	62	0.96
7107720--7107776	28	2.0	28	90	6	89	22	3	12	61	1.46
7108452--7108477	2	13.0	2	100	0	52	50	0	0	50	1.00
7108992--7109081	40	2.2	41	84	9	114	36	13	14	35	1.85
7113038--7113080	20	2.1	20	83	12	52	51	0	18	30	1.47
7115993--7116338	60	5.7	60	87	5	491	32	12	8	46	1.71
7116354--7116428	25	3.2	23	78	10	80	77	2	5	14	1.06
7116354--7116440	30	2.9	30	84	6	95	78	2	4	14	1.02
7116364--7116440	5	15.2	5	76	20	63	79	2	3	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7116384--7116436	17	2.9	17	83	8	61	83	1	1	13	0.82
7116352--7116440	24	3.7	24	71	23	71	78	2	4	14	1.00
7117333--7117539	41	5.0	41	92	1	279	36	23	16	23	1.94
7118527--7118582	27	2.1	26	87	9	78	10	14	0	75	1.06
7118542--7118600	8	7.8	8	78	14	63	11	10	0	77	0.98
7125261--7125547	60	4.7	60	83	8	355	33	13	7	45	1.72
7125261--7125536	119	2.2	122	88	7	400	34	14	7	44	1.72
7125561--7125646	5	17.6	5	74	20	67	79	2	4	13	1.00
7125340--7125564	119	1.9	117	85	8	314	33	13	6	45	1.70
7125561--7125664	30	3.6	28	74	10	84	76	3	5	13	1.10
7125677--7125705	13	2.1	14	93	6	51	82	0	0	17	0.66
7126678--7126762	3	28.3	3	77	11	52	69	1	3	25	1.12
7126747--7126827	13	6.6	12	76	17	60	77	1	1	19	0.90
7126741--7126827	6	14.2	6	76	17	81	77	1	1	20	0.91
7126695--7126805	40	2.7	40	78	13	100	71	1	3	23	1.12
7126747--7126827	31	2.6	30	82	5	90	77	1	1	19	0.90
7126686--7126808	46	2.7	46	79	9	119	71	1	3	23	1.09
7126735--7126826	18	4.9	18	80	15	98	76	1	1	21	0.92
7126734--7126827	37	2.5	36	80	11	109	76	1	1	21	0.91
7126735--7126828	19	5.0	19	80	14	90	75	1	1	22	0.93
7127797--7127831	16	2.2	16	94	0	61	31	14	11	42	1.81
7133170--7133199	12	2.6	11	90	10	51	10	0	0	90	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7136408--7136438	16	1.9	16	93	0	53	64	9	16	9	1.48
7137449--7137505	21	2.8	20	77	17	62	70	5	3	21	1.22
7138022--7138074	13	4.1	13	85	0	61	50	22	9	16	1.74
7138510--7138544	17	2.1	17	94	0	61	48	0	0	51	1.00
7143084--7143198	21	5.1	21	75	15	95	31	3	11	53	1.53
7143103--7143199	24	4.1	24	81	7	108	31	3	10	54	1.50
7143084--7143219	44	3.0	43	70	22	107	30	2	10	55	1.48
7143276--7143397	55	2.2	53	84	4	154	31	6	9	53	1.58
7143305--7143350	23	2.0	23	95	4	85	26	4	8	60	1.44
7143302--7143363	20	3.0	21	82	15	83	29	4	9	56	1.52
7143450--7143478	4	7.2	4	100	0	58	24	0	0	75	0.80
7143474--7143502	3	9.7	3	100	0	58	31	0	0	68	0.89
7143505--7143566	24	2.6	24	82	7	72	32	1	11	54	1.45
7143535--7143676	35	3.8	36	70	15	94	33	4	8	53	1.53
7143687--7143800	20	6.0	20	74	20	86	33	7	9	50	1.62
7145184--7145482	139	2.2	137	88	4	444	27	11	11	49	1.74
7145408--7145640	118	2.0	118	84	1	306	25	11	13	50	1.74
7147979--7148093	35	3.3	34	81	7	124	30	7	13	48	1.70
7148199--7148263	18	3.6	18	74	0	58	24	13	16	44	1.85
7148203--7148273	36	2.0	36	83	5	90	25	15	18	40	1.89
7148309--7148403	32	3.0	32	87	3	129	32	24	6	36	1.81
7148384--7148418	18	1.9	18	94	0	61	31	34	5	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7148492--7148517	13	2.0	13	100	0	52	30	23	7	38	1.83
7148691--7148860	22	7.8	22	69	6	96	32	25	15	26	1.96
7148691--7148838	64	2.3	66	84	5	203	32	25	15	26	1.95
7148935--7149209	43	6.4	43	79	6	263	29	14	17	38	1.89
7148935--7149209	87	3.2	85	81	5	248	29	14	17	38	1.89
7150135--7150233	21	4.5	21	72	17	76	33	3	8	55	1.45
7150259--7150378	64	1.9	60	83	6	150	28	7	10	53	1.63
7150444--7150468	4	6.2	4	100	0	50	24	0	0	76	0.80
7150616--7150677	20	2.9	22	76	21	60	30	8	12	48	1.70
7150642--7150693	20	2.6	20	79	11	61	34	7	9	48	1.65
7156016--7156069	27	2.0	27	92	0	90	31	12	12	42	1.81
7158500--7158544	21	2.2	21	88	4	65	37	11	13	37	1.80
7165087--7165144	3	18.7	3	77	13	55	63	5	1	29	1.25
7165124--7165187	27	2.4	27	75	12	69	64	6	3	26	1.33
7165648--7165744	44	2.3	42	77	14	103	69	6	13	11	1.36
7167314--7167351	3	12.7	3	94	0	67	65	0	2	31	1.06
7167949--7168004	20	2.8	21	81	5	53	55	0	1	42	1.10
7169754--7169861	32	3.4	31	74	6	99	38	5	5	50	1.49
7170840--7170881	17	2.3	19	88	12	61	52	0	0	47	1.00
7170840--7170889	20	2.3	20	86	10	64	54	0	0	46	1.00
7170875--7170917	16	2.5	17	82	17	54	62	0	2	34	1.08
7171329--7171381	21	2.5	21	78	0	70	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7171616--7171649	18	1.9	17	94	5	59	73	0	0	26	0.83
7176239--7176281	21	2.0	23	81	9	54	65	0	2	32	1.06
7179502--7180430	161	5.8	161	81	4	867	42	14	10	33	1.79
7179502--7180450	162	5.9	158	79	7	682	42	13	10	33	1.78
7181600--7181636	13	2.8	13	87	0	56	62	5	8	24	1.44
7185315--7185344	9	3.3	9	100	0	60	26	20	23	30	1.98
7186701--7186734	17	2.0	17	88	0	50	41	17	11	29	1.85
7192417--7192442	2	13.0	2	100	0	52	50	0	0	50	1.00
7192517--7192541	4	6.2	4	100	0	50	0	48	24	28	1.52
7196097--7196144	2	24.0	2	87	8	71	47	2	2	47	1.25
7198874--7198906	2	16.5	2	100	0	66	51	0	48	0	1.00
7205592--7205626	2	18.0	2	88	5	54	51	0	0	48	1.00
7207059--7207097	15	2.7	15	88	4	53	38	2	0	58	1.12
7207262--7207301	19	2.3	19	87	12	59	40	0	0	60	0.97
7208417--7208495	28	2.8	27	79	7	95	78	5	1	15	0.99
7208417--7208481	5	12.6	5	76	22	55	78	4	0	16	0.91
7208417--7208488	13	5.1	14	78	9	76	79	4	0	16	0.89
7208835--7208859	12	2.1	12	100	0	50	56	16	0	28	1.41
7209350--7209487	3	49.3	3	68	18	84	59	4	0	35	1.22
7209350--7209487	13	9.9	15	71	17	84	59	4	0	35	1.22
7209351--7209481	35	3.6	37	70	15	103	58	4	0	36	1.24
7209836--7209988	60	2.5	60	77	0	162	42	13	20	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7209942--7210083	60	2.4	60	80	2	160	40	9	23	26	1.86
7211197--7211251	9	5.5	10	79	10	51	5	12	0	81	0.84
7211212--7211245	12	2.8	12	91	8	52	5	14	0	79	0.91
7211203--7211244	22	1.9	22	85	9	59	4	16	0	78	0.91
7216575--7216627	7	7.1	7	75	12	52	79	5	0	15	0.91
7216575--7216627	16	3.5	15	75	15	56	79	5	0	15	0.91
7216575--7216627	22	2.3	23	90	3	81	79	5	0	15	0.91
7217506--7217619	5	22.2	5	72	16	74	57	6	1	35	1.34
7217548--7217625	3	28.0	3	72	14	69	64	3	1	30	1.20
7217551--7217593	21	2.0	21	95	0	77	62	2	0	34	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106