genome.fa.s57.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  59  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10465212--10465260	21	2.5	20	74	9	55	57	0	0	42	0.99
10465583--10465622	21	1.9	21	89	0	62	42	0	2	55	1.13
10466972--10467040	26	2.5	27	76	9	77	49	0	0	50	1.00
10466972--10467041	28	2.5	28	73	15	74	48	0	0	51	1.00
10467087--10467143	25	2.2	25	81	6	69	52	1	1	43	1.21
10469341--10469378	20	1.9	20	84	10	51	23	0	23	52	1.47
10470836--10470881	19	2.4	20	82	10	69	63	0	0	36	0.95
10475726--10476974	364	3.4	362	80	6	1285	28	20	29	22	1.98
10478858--10478895	18	2.1	18	100	0	76	34	15	21	28	1.94
10484768--10484811	22	2.0	22	86	8	63	47	11	9	31	1.71
10488152--10488200	25	2.0	25	91	0	80	36	18	28	16	1.92
10488264--10488313	25	2.0	26	84	7	68	62	2	12	24	1.40
10488495--10488525	6	5.2	6	100	0	62	67	0	0	32	0.91
10508104--10508182	39	2.0	39	100	0	158	32	7	12	46	1.70
10509948--10509994	21	2.3	20	82	13	60	44	0	4	51	1.21
10514076--10514210	66	2.1	65	85	1	180	25	15	28	29	1.96
10515535--10515576	8	5.5	8	80	8	52	0	2	11	85	0.68
10515531--10515576	22	2.1	22	88	4	67	0	2	13	84	0.71
10529497--10529871	187	2.0	187	100	0	750	37	14	13	33	1.86
10533099--10533145	21	2.2	22	81	11	53	27	0	10	61	1.29
10535761--10535955	97	2.0	98	93	1	338	31	21	27	20	1.97
10538917--10539032	59	2.0	60	83	11	150	56	1	2	38	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10539006--10539061	27	2.2	26	83	6	69	67	5	0	26	1.11
10557698--10557746	24	2.0	25	88	8	73	59	4	12	24	1.50
10557891--10557934	22	2.0	22	86	0	61	45	6	6	40	1.57
10561846--10561889	22	2.0	22	86	8	63	47	6	9	36	1.62
10563087--10563133	24	2.0	24	87	8	69	38	23	10	27	1.88
10563938--10563982	12	3.5	12	82	11	54	44	0	2	53	1.13
10565496--10565534	2	19.5	2	94	0	69	48	2	0	48	1.15
10565653--10565698	24	1.9	24	82	8	58	54	6	0	39	1.26
10565885--10565920	15	2.4	15	90	9	56	11	5	0	83	0.80
10570449--10570480	2	16.0	2	100	0	64	50	0	0	50	1.00
10571665--10571712	23	2.0	24	84	4	62	37	2	0	60	1.09
10587491--10587535	19	2.3	19	84	7	54	33	2	0	64	1.06
10588953--10589053	49	2.1	49	92	0	166	39	5	10	43	1.64
10590750--10590788	21	1.9	20	85	15	53	66	5	10	17	1.39
10597705--10597775	35	2.0	35	100	0	142	42	2	11	43	1.55
10604963--10604989	2	13.5	2	100	0	54	51	0	0	48	1.00
10607594--10607640	19	2.5	20	80	19	57	19	8	19	53	1.70
10609159--10609184	12	2.2	12	100	0	52	46	7	0	46	1.31
10610957--10611194	131	1.8	128	91	2	395	57	2	7	31	1.41
10611755--10611796	21	2.0	21	95	0	75	69	0	7	23	1.13
10612548--10612605	30	1.9	30	82	6	73	51	6	3	37	1.46
10618199--10618236	12	3.1	13	88	7	53	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10618646--10618775	34	3.8	34	79	4	136	40	3	9	46	1.54
10618646--10618775	68	1.9	68	80	3	154	40	3	9	46	1.54
10623971--10624014	21	2.1	21	83	8	54	36	20	11	31	1.88
10626818--10627633	187	4.4	186	84	2	990	35	11	10	42	1.76
10626790--10627611	374	2.2	374	85	2	1096	35	11	11	41	1.77
10631678--10631747	35	2.0	35	82	0	86	35	20	11	32	1.88
10631883--10632588	305	2.3	304	76	6	692	35	13	13	37	1.84
10652366--10652407	20	2.0	21	90	4	68	28	7	14	50	1.69
10655247--10655297	21	2.5	21	87	3	68	45	0	3	50	1.20
10658304--10658345	20	2.1	20	95	0	75	19	42	0	38	1.51
10661430--10661547	47	2.5	47	83	1	139	38	14	12	33	1.84
10661524--10661674	43	3.5	44	78	7	148	39	15	15	29	1.89
10672767--10672799	17	1.9	17	93	0	57	3	0	6	90	0.52
10676649--10676698	25	2.0	25	88	4	73	44	10	10	36	1.72
10685641--10685670	14	2.1	15	93	6	53	63	3	0	33	1.11
10686625--10686653	12	2.5	12	94	5	51	48	0	6	44	1.29
10686729--10686772	11	4.0	11	85	8	54	56	0	0	43	0.99
10686737--10686762	12	2.2	12	100	0	52	61	0	0	38	0.96
10686703--10686774	23	3.1	23	72	4	65	59	0	0	40	0.97
10688086--10688119	17	2.1	17	88	5	52	32	2	5	58	1.37
10688943--10689002	31	1.9	31	93	0	102	43	11	3	41	1.57
10688951--10689015	31	2.1	30	83	11	78	43	10	3	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10692616--10693199	317	1.8	317	86	0	846	39	14	17	28	1.89
10694931--10695316	194	2.0	192	95	1	700	34	25	11	29	1.90
10696190--10696324	17	7.9	17	65	12	62	31	14	20	34	1.92
10696178--10696296	34	3.5	34	75	10	116	30	15	19	34	1.93
10696350--10696397	16	3.0	16	84	0	69	50	8	8	33	1.63
10697760--10697791	12	2.5	13	95	5	57	12	6	0	81	0.87
10697827--10697871	17	2.6	17	78	3	54	44	20	0	35	1.51
10700694--10700726	16	2.1	16	94	0	57	66	6	6	21	1.35
10702079--10702118	14	2.9	14	88	3	55	70	0	0	30	0.88
10702078--10702139	13	4.9	12	75	21	56	70	3	1	24	1.10
10702078--10702139	26	2.4	25	79	10	63	70	3	1	24	1.10
10702088--10702174	12	7.2	12	71	18	56	77	3	3	16	1.05
10702122--10702173	22	2.5	20	82	11	61	82	1	3	11	0.88
10702126--10702175	21	2.3	22	89	3	75	82	2	4	12	0.90
10702519--10702575	29	2.0	29	86	13	82	66	17	0	15	1.25
10702654--10702703	14	3.6	14	78	7	50	62	10	4	24	1.44
10702654--10702708	27	2.0	27	85	0	74	61	12	3	21	1.46
10703189--10703239	19	2.6	19	84	6	57	68	9	3	17	1.33
10713935--10713969	18	1.9	18	94	0	61	34	22	2	40	1.69
10719876--10719958	7	12.3	7	87	7	66	13	6	10	69	1.34
10719862--10719936	25	3.2	25	72	11	68	12	6	10	70	1.33
10719904--10719950	21	2.2	21	96	0	85	14	10	12	61	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10719904--10719950	14	3.4	14	96	0	85	14	10	12	61	1.56
10719950--10719975	13	2.0	13	100	0	52	30	0	0	69	0.89
10720740--10720797	24	2.4	23	80	8	71	41	18	13	25	1.88
10721072--10721121	22	2.2	23	79	13	59	24	18	26	32	1.97
10721146--10721246	32	3.2	32	73	0	94	30	14	21	32	1.94
10723323--10723354	14	2.2	14	94	5	55	0	0	12	87	0.54
10728078--10728110	12	2.8	12	90	0	57	27	6	0	66	1.15
10728735--10728794	3	20.0	3	100	0	120	33	0	0	66	0.92
10730390--10730503	30	3.8	30	76	7	99	38	2	2	56	1.27
10731193--10731240	22	2.2	22	85	7	62	83	4	2	10	0.87
10732260--10732306	20	2.4	19	82	13	51	72	2	4	21	1.12
10732260--10732306	21	2.4	19	82	13	51	72	2	4	21	1.12
10732355--10732388	9	3.7	9	84	7	50	61	0	2	35	1.11
10732356--10732390	10	3.6	10	84	7	54	62	0	2	34	1.10
10732541--10732585	18	2.4	18	88	7	63	75	0	2	22	0.91
10741995--10742033	20	2.0	19	90	5	60	74	0	0	25	0.82
10743060--10743462	202	2.0	199	85	5	544	41	11	14	32	1.83
10747900--10747926	3	9.0	3	100	0	54	66	0	0	33	0.92
10749504--10749563	11	5.5	11	81	0	75	50	25	0	25	1.50
10749504--10749563	22	2.7	22	92	0	102	50	25	0	25	1.50
10755382--10755432	26	2.0	26	84	7	68	66	3	25	3	1.26
10757168--10757668	142	3.6	142	79	5	434	32	12	14	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10757398--10757667	137	2.0	137	82	4	330	33	11	13	41	1.81
10759276--10759365	25	3.5	25	77	8	76	48	34	2	14	1.56
10759328--10759457	20	6.6	19	79	8	127	47	31	3	17	1.63
10759258--10759365	26	4.2	26	76	10	80	49	32	2	15	1.59
10759328--10759454	39	3.2	40	80	7	143	46	32	3	18	1.64
10759917--10759947	15	2.1	15	100	0	62	32	6	0	61	1.21
10759968--10760252	147	2.0	145	83	4	358	50	8	9	31	1.65
10760229--10760296	20	3.2	20	76	13	73	51	7	14	26	1.68
10760228--10760296	23	3.2	21	76	13	77	52	7	14	26	1.67
10760882--10760932	18	2.8	18	90	3	75	41	37	0	21	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106