genome.fa.s57.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  104  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22036614--22036705	33	2.7	34	81	8	89	51	0	1	47	1.07
22036645--22036771	38	3.5	37	72	20	108	48	2	0	48	1.20
22037077--22037144	25	2.6	29	78	21	78	41	1	0	57	1.08
22043978--22044004	14	1.9	14	100	0	54	37	7	18	37	1.79
22044161--22044340	18	10.1	18	68	21	87	56	2	1	40	1.21
22044187--22044340	46	3.4	45	77	14	163	57	3	1	38	1.23
22044258--22044336	16	5.3	16	77	13	80	58	3	0	37	1.16
22044161--22044359	13	15.2	13	66	22	96	55	2	1	41	1.20
22044236--22044338	43	2.3	44	86	5	145	58	3	0	36	1.23
22044182--22044358	28	5.9	28	72	20	119	56	2	1	39	1.21
22044161--22044248	22	3.9	23	79	11	74	54	1	1	43	1.15
22044161--22044361	43	4.7	43	77	12	139	55	2	0	40	1.20
22044199--22044358	61	2.6	59	74	13	146	55	3	1	40	1.23
22044388--22044436	18	2.8	17	82	11	55	44	0	0	55	0.99
22044404--22044458	17	3.4	16	80	7	58	45	0	0	54	0.99
22044448--22044513	16	4.6	15	74	24	70	48	0	0	51	1.00
22044419--22044508	26	2.9	31	76	22	84	47	0	0	52	1.00
22044451--22044520	9	8.2	9	74	17	69	50	0	0	50	1.00
22044451--22044520	26	2.8	26	91	6	110	50	0	0	50	1.00
22047851--22047887	17	2.1	18	95	5	67	29	0	0	70	0.88
22056627--22056660	9	3.7	9	84	7	50	82	0	2	14	0.79
22056630--22056692	19	3.2	19	80	6	72	71	1	7	19	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22056955--22057004	17	2.8	18	76	14	59	50	2	0	48	1.12
22058701--22058758	27	2.1	27	93	0	98	34	0	20	44	1.52
22062570--22062606	8	4.5	8	93	3	56	43	0	2	54	1.14
22062828--22062915	32	2.8	32	82	0	95	42	12	7	37	1.72
22062933--22063064	34	3.9	34	82	1	140	40	11	8	39	1.71
22063576--22063620	13	3.8	12	88	8	65	64	0	0	35	0.94
22063585--22063627	16	2.6	16	88	7	59	65	0	0	34	0.93
22072643--22072688	24	1.9	24	82	8	58	56	0	0	43	0.99
22072993--22073099	23	4.4	24	75	18	87	50	0	0	47	1.13
22073043--22073109	25	2.8	25	82	12	72	56	1	0	41	1.08
22084855--22084927	4	18.5	4	84	2	58	39	24	8	27	1.84
22084869--22084940	32	2.2	32	80	0	81	34	27	12	25	1.92
22084866--22084940	36	2.1	36	87	0	105	36	26	12	25	1.91
22098804--22098829	8	3.2	8	100	0	52	61	23	15	0	1.33
22099657--22099684	3	9.3	3	100	0	56	64	0	0	35	0.94
22105942--22105971	13	2.4	13	94	5	53	46	0	0	53	1.00
22106079--22106145	26	2.7	24	80	11	80	47	1	2	47	1.26
22106063--22106151	26	3.8	24	73	17	71	48	1	3	47	1.26
22106475--22106590	42	3.0	38	78	13	112	50	2	2	44	1.29
22106801--22106846	23	2.0	22	84	16	58	52	2	0	45	1.13
22109997--22110050	28	2.0	27	85	3	72	75	0	18	5	0.98
22115131--22115155	10	2.5	10	100	0	50	84	0	8	8	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22115990--22116095	52	2.0	52	88	0	158	30	13	12	44	1.80
22116336--22116393	19	3.0	19	74	18	57	74	1	13	10	1.15
22118665--22118746	36	2.2	36	78	8	85	39	18	13	29	1.89
22119555--22119663	46	2.4	46	82	3	130	32	7	16	44	1.75
22119685--22119770	24	3.7	24	70	13	63	73	9	4	12	1.23
22119802--22119862	9	6.6	9	73	12	52	67	6	3	22	1.29
22121308--22121337	15	2.1	14	93	6	51	90	0	10	0	0.47
22121308--22121345	13	2.9	14	80	15	53	84	0	15	0	0.63
22121308--22121359	26	2.0	26	84	0	68	82	1	15	0	0.75
22121308--22121361	22	2.5	22	85	11	69	81	1	16	0	0.78
22128986--22129046	24	2.6	23	79	7	68	49	0	1	49	1.10
22133033--22133063	7	4.4	7	100	0	62	38	0	12	48	1.42
22134605--22134635	11	2.8	11	100	0	62	19	19	0	61	1.35
22158611--22158675	30	2.2	30	85	0	85	43	0	3	53	1.16
22159988--22160055	2	37.0	2	75	16	58	47	0	5	47	1.26
22160351--22160406	21	2.6	21	78	13	69	33	25	1	39	1.66
22161160--22161194	10	3.5	10	92	7	54	51	5	0	42	1.25
22162994--22163032	3	13.0	3	100	0	78	66	0	0	33	0.92
22167977--22168028	25	2.1	25	85	0	68	23	15	30	30	1.95
22170632--22170731	50	2.0	50	94	0	173	41	15	11	33	1.82
22171223--22172121	224	4.0	225	98	0	1721	41	21	10	26	1.85
22178949--22179013	31	2.0	35	85	11	93	40	1	0	58	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22181285--22181314	11	2.7	11	94	0	51	46	0	0	53	1.00
22181937--22182160	111	2.0	111	95	0	403	30	15	15	38	1.88
22183067--22183119	22	2.4	23	81	12	58	41	0	3	54	1.18
22184622--22184674	24	2.1	26	82	6	65	45	1	5	47	1.37
22186279--22186318	21	1.9	21	84	0	53	42	5	12	40	1.64
22189356--22189498	5	27.2	5	74	17	87	39	0	5	54	1.29
22189400--22189495	13	7.5	13	75	9	72	40	0	3	56	1.15
22189359--22189454	18	5.2	18	75	16	81	36	1	8	54	1.38
22189421--22189481	18	3.3	19	79	9	63	45	0	4	49	1.23
22189960--22189992	10	3.4	10	83	8	50	36	3	6	54	1.41
22192914--22193182	144	1.9	144	81	6	321	43	10	13	31	1.79
22198731--22198849	60	2.0	60	85	3	159	26	8	11	52	1.66
22198887--22198916	2	15.0	2	100	0	60	50	0	0	50	1.00
22200188--22200228	16	2.6	16	78	17	50	43	2	0	53	1.13
22201047--22201090	23	1.9	24	90	9	74	34	0	15	50	1.45
22201280--22201310	2	16.0	2	93	6	55	48	0	0	51	1.00
22203268--22203312	12	3.8	12	80	11	56	62	0	0	37	0.96
22203266--22203344	24	3.1	25	78	8	79	60	1	1	36	1.13
22203283--22203325	19	2.3	19	84	8	52	65	0	0	34	0.93
22203300--22203369	5	14.6	5	70	19	51	57	4	1	37	1.27
22204085--22204130	23	1.9	25	86	8	69	69	0	4	26	1.07
22204135--22204173	11	3.5	11	85	3	51	56	0	2	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22204226--22204270	16	2.6	17	86	6	56	60	0	0	40	0.97
22205829--22205868	13	3.1	13	81	0	53	42	0	0	57	0.98
22205863--22205898	18	2.0	18	89	10	56	55	0	2	41	1.14
22206385--22206426	10	4.3	10	81	6	50	52	4	11	30	1.59
22206915--22206959	22	2.0	23	91	4	74	44	11	4	40	1.60
22219765--22220014	129	1.9	129	90	0	392	28	29	10	32	1.89
22221320--22221363	22	2.0	22	81	4	52	56	4	0	38	1.20
22221610--22221685	24	3.1	24	78	9	64	40	0	5	53	1.23
22224967--22225072	51	2.1	51	90	0	167	21	16	8	53	1.69
22228532--22228565	17	2.0	17	100	0	68	11	35	11	41	1.78
22229068--22229145	35	2.2	35	80	13	97	26	8	8	55	1.61
22229159--22229197	16	2.4	17	82	8	53	56	2	7	33	1.41
22229191--22229224	17	2.0	17	88	11	52	55	5	5	32	1.48
22230685--22230726	14	3.2	13	81	15	50	26	0	26	47	1.52
22230797--22230853	29	2.0	28	83	10	71	29	3	15	50	1.61
22234124--22234459	143	2.4	143	77	4	304	43	14	11	30	1.81
22234634--22234676	20	2.2	19	83	4	50	25	13	9	51	1.71
22237264--22237306	20	2.1	21	84	16	56	48	0	0	51	1.00
22239065--22239096	15	2.1	15	100	0	64	43	6	9	40	1.62
22240844--22241032	94	2.0	94	97	0	360	33	15	16	33	1.91
22241357--22241430	26	2.9	23	75	20	67	48	1	4	45	1.29
22241520--22241665	8	17.5	8	72	15	91	43	0	1	54	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22241520--22241676	26	5.5	28	73	18	112	43	0	1	54	1.13
22241549--22241676	26	4.7	26	78	12	123	43	0	0	54	1.11
22241519--22241676	57	2.7	58	83	10	205	43	0	1	55	1.12
22243206--22243282	6	12.5	6	76	18	54	3	14	1	80	0.92
22243190--22243274	15	5.8	14	75	15	66	3	14	2	80	0.95
22243206--22243281	27	2.7	27	80	13	75	3	14	1	80	0.92
22243252--22243289	17	2.2	18	86	13	53	13	10	0	76	1.02
22243468--22243506	17	2.4	17	86	4	53	2	0	10	87	0.65
22245035--22245081	18	2.7	18	90	3	69	12	0	10	76	1.02
22245798--22245836	21	1.9	20	89	5	60	74	0	2	23	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106