genome.fa.s57.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  22  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3947985--3948009	8	3.1	8	100	0	50	16	0	24	60	1.36
3958994--3959082	31	2.8	31	70	17	74	21	3	5	69	1.24
3969673--3969843	33	5.2	33	84	0	207	32	15	14	38	1.87
3969674--3969877	99	2.1	99	84	1	266	31	14	13	39	1.85
3969673--3969890	66	3.3	66	85	1	258	31	16	13	39	1.86
3969932--3970074	36	4.0	36	79	6	148	26	14	16	42	1.86
3970189--3970333	36	4.0	35	82	8	150	26	8	18	45	1.79
3970189--3970333	37	4.0	36	81	7	170	26	8	18	45	1.79
3971986--3972016	13	2.5	13	94	5	55	87	0	12	0	0.55
3971986--3972019	12	2.9	11	87	12	50	88	0	11	0	0.52
3979456--3979720	100	2.7	98	90	5	405	56	4	8	30	1.49
3984143--3984186	8	5.4	8	86	5	52	9	18	0	72	1.10
3984143--3984204	17	3.6	17	77	10	56	12	17	0	69	1.19
3996007--3996040	17	2.1	17	88	5	52	29	5	5	58	1.45
4002050--4002112	27	2.4	26	82	12	67	36	7	0	55	1.29
4003075--4003119	22	2.0	24	86	8	67	57	0	0	42	0.98
4004679--4004717	20	1.9	21	89	5	62	66	0	0	33	0.92
4005556--4005596	22	2.0	20	85	9	55	51	0	0	48	1.00
4006409--4006566	86	1.8	86	82	8	205	43	3	3	50	1.34
4008651--4008703	9	5.9	9	88	0	61	16	0	15	67	1.23
4012947--4013479	266	2.0	266	92	2	883	36	16	14	32	1.89
4013882--4014175	58	5.0	58	82	3	311	36	11	5	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4014779--4014830	20	2.5	21	84	6	61	7	11	7	73	1.26
4014996--4015032	16	2.3	16	90	9	58	13	2	0	83	0.74
4014992--4015026	9	3.8	9	85	7	52	14	2	0	82	0.77
4015161--4015389	42	5.5	42	80	10	226	44	20	10	24	1.83
4015178--4015389	41	5.1	42	81	7	238	41	22	10	25	1.86
4015179--4015392	83	2.6	82	85	8	258	42	21	10	25	1.85
4015664--4016043	114	3.3	114	90	1	575	33	15	14	36	1.88
4016252--4016302	21	2.5	20	75	15	50	35	15	9	39	1.81
4016231--4016386	79	2.0	79	87	7	228	33	19	8	37	1.84
4016179--4016345	38	4.3	38	72	14	126	33	19	9	37	1.85
4016137--4016348	117	1.8	117	87	4	320	33	17	10	38	1.84
4016334--4016575	21	10.8	21	75	15	177	37	16	9	36	1.82
4016375--4016502	25	5.4	25	84	11	98	34	16	11	37	1.85
4016334--4016576	46	5.4	45	77	12	225	37	16	9	36	1.81
4016337--4016576	92	2.6	93	79	13	250	37	16	9	37	1.81
4016334--4016577	67	3.6	68	75	15	227	37	15	9	36	1.81
4017385--4017411	4	6.8	4	100	0	54	25	22	0	51	1.48
4017800--4017882	9	8.9	9	72	12	60	7	14	0	78	0.95
4017822--4017877	10	5.8	10	76	21	57	8	16	0	75	1.05
4017803--4017882	29	2.8	29	76	16	94	7	15	0	77	0.98
4017827--4017869	6	7.5	6	85	15	56	11	16	0	72	1.13
4017833--4017878	12	4.4	11	86	13	62	8	15	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4017818--4017884	14	4.7	15	76	10	61	7	14	0	77	0.97
4017803--4017891	28	3.2	27	76	17	85	7	15	0	76	1.00
4017778--4017892	22	5.1	22	70	17	76	6	16	0	75	1.06
4018242--4018274	17	1.9	17	93	0	57	3	15	0	81	0.80
4018779--4018839	23	2.7	23	100	0	122	50	9	4	34	1.57
4021851--4022045	58	3.3	59	84	5	232	35	10	6	47	1.65
4022767--4022817	20	2.5	20	81	9	68	3	11	5	78	1.06
4025087--4025113	2	13.5	2	100	0	54	48	0	0	51	1.00
4027962--4028060	33	3.0	33	96	0	180	36	12	12	39	1.80
4028575--4028619	2	22.5	2	86	0	63	48	0	4	46	1.22
4029607--4029658	26	2.0	26	84	0	68	30	7	19	42	1.79
4034793--4034844	20	2.5	21	75	6	52	51	9	3	34	1.53
4036254--4036293	21	1.9	21	85	10	55	40	12	7	40	1.71
4039627--4039670	3	14.7	3	100	0	88	34	0	0	65	0.93
4040988--4041017	14	2.1	15	93	6	53	36	10	13	40	1.78
4042694--4042724	8	3.8	8	95	4	53	54	0	0	45	0.99
4046998--4047045	25	2.0	23	84	8	60	41	6	33	18	1.76
4047323--4047369	25	1.9	24	91	4	76	36	0	0	63	0.94
4049219--4049253	17	2.1	17	88	0	52	60	0	0	40	0.97
4049415--4049581	16	10.5	16	66	12	58	38	2	8	50	1.45
4049446--4049518	32	2.3	32	83	2	94	42	1	4	52	1.29
4049565--4049607	21	2.1	21	86	4	61	39	6	4	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4052205--4052231	12	2.2	12	100	0	54	25	59	7	7	1.51
4055389--4055433	23	2.0	24	86	8	67	37	0	0	62	0.96
4055378--4055424	18	2.8	16	81	12	58	36	2	0	61	1.08
4055758--4055804	17	2.9	16	87	12	69	63	0	2	34	1.06
4055519--4056009	100	4.9	100	78	11	356	54	4	4	36	1.41
4055561--4056141	99	5.9	96	76	11	441	52	4	4	38	1.41
4057082--4057141	22	2.8	21	74	18	61	56	13	5	25	1.57
4059653--4059842	48	4.0	49	79	10	203	38	21	12	27	1.89
4063902--4064085	58	3.2	56	84	9	246	37	13	8	40	1.74
4063956--4064223	137	1.9	138	95	0	484	37	13	8	39	1.77
4064065--4064105	20	2.0	20	100	0	82	39	9	19	31	1.84
4064008--4064163	79	2.0	78	91	1	249	37	12	10	39	1.77
4064085--4064446	119	3.1	118	97	1	670	33	14	8	43	1.76
4064087--4064422	58	5.7	58	87	5	503	35	15	7	41	1.76
4064452--4064577	13	9.6	13	72	17	66	73	3	4	18	1.14
4064470--4064520	9	5.4	9	77	11	50	82	1	3	11	0.89
4065421--4065483	30	2.2	27	83	13	74	63	1	14	20	1.38
4065445--4065513	28	2.5	29	86	6	90	62	1	11	24	1.37
4065502--4065570	25	2.7	26	84	4	86	66	1	0	31	1.00
4065492--4065555	22	2.7	23	83	13	76	65	0	1	32	1.02
4065509--4065579	22	3.3	21	78	7	72	64	2	0	32	1.08
4065623--4065662	9	4.7	9	84	15	50	67	7	0	25	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4076727--4076955	80	2.9	80	81	4	232	35	12	12	39	1.81
4076693--4076944	40	6.3	40	79	6	199	36	10	13	40	1.79
4077030--4077136	41	2.6	41	75	8	119	23	11	15	49	1.77
4077186--4077225	20	2.0	20	85	9	55	72	10	7	10	1.28
4077635--4077682	24	2.0	24	84	15	64	68	4	14	12	1.34
4077653--4077684	13	2.3	15	89	10	50	62	3	18	15	1.45
4077816--4077870	23	2.3	24	84	12	78	50	0	23	25	1.49
4078406--4078470	32	2.0	32	91	5	105	40	10	10	38	1.75
4078369--4078515	78	1.9	77	84	4	197	36	12	11	39	1.79
4078447--4078608	45	3.6	45	78	7	177	33	9	12	44	1.74
4078450--4078619	91	1.9	89	86	7	245	32	8	12	46	1.71
4079466--4079511	21	2.2	21	88	0	65	36	4	13	45	1.63
4079873--4079908	16	2.2	16	90	0	54	16	13	11	58	1.63
4080021--4080116	3	31.7	3	93	2	93	55	0	1	43	1.06
4088037--4088141	53	2.0	53	90	0	165	30	15	12	41	1.84
4091403--4091456	24	2.4	23	82	14	60	64	5	5	24	1.36
4093597--4093631	16	2.2	16	94	0	61	37	5	14	42	1.69
4093598--4093893	88	3.4	87	83	2	324	43	7	6	42	1.59
4095765--4095799	15	2.3	15	90	5	52	45	0	5	48	1.26
4095733--4096261	59	8.8	58	79	11	532	36	10	6	45	1.66
4096276--4096357	5	15.8	5	75	18	71	78	2	4	14	1.03
4096306--4096358	17	3.3	16	80	12	56	79	1	5	13	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4096286--4096357	21	3.3	21	81	11	83	77	2	5	13	1.05
4096276--4096357	6	14.5	6	69	20	52	78	2	4	14	1.03
4096383--4096415	16	2.1	15	94	5	57	78	6	0	15	0.93
4097273--4097318	18	2.4	19	92	7	76	73	8	6	10	1.23
4097312--4097344	17	1.9	17	88	11	50	72	0	3	24	0.98
4097322--4097393	21	3.4	22	78	5	85	69	2	4	23	1.19
4097273--4097350	18	4.2	17	77	18	59	71	5	6	16	1.25
4097367--4097525	4	40.0	4	67	15	55	64	4	2	28	1.25
4097313--4097393	21	3.9	21	73	10	67	71	2	3	22	1.14
4097381--4097430	19	2.6	21	81	15	63	62	4	2	32	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106