genome.fa.s57.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  6  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836146--836201	14	4.1	14	80	15	55	3	0	12	83	0.76
836153--836200	25	1.9	25	86	0	69	4	0	6	89	0.58
836350--836444	35	2.7	35	82	6	95	45	7	26	21	1.77
836655--836767	35	3.2	35	78	5	120	46	9	21	23	1.80
836620--836798	70	2.6	70	76	9	170	49	10	18	21	1.77
837088--837180	35	2.7	35	77	0	105	43	10	23	22	1.85
838279--838358	23	3.5	23	83	6	99	30	17	23	28	1.97
838278--838369	46	2.0	46	86	0	130	30	16	23	29	1.96
838295--838370	23	3.3	23	80	7	91	31	15	22	30	1.95
838204--838545	120	2.8	119	78	6	323	30	15	23	30	1.96
838376--838458	23	3.7	23	80	1	87	28	16	22	31	1.96
838748--838783	17	2.3	15	90	9	54	2	13	0	83	0.76
843671--843706	16	2.3	16	90	4	56	8	16	2	72	1.21
845632--845718	16	5.4	15	78	12	75	18	2	31	48	1.61
845650--845708	8	7.4	8	84	5	75	18	0	30	50	1.47
845650--845708	24	2.5	24	91	5	93	18	0	30	50	1.47
850164--850196	9	3.8	9	88	8	50	90	0	3	6	0.52
852669--852830	84	1.9	84	91	0	261	37	12	12	37	1.82
852964--853018	22	2.5	22	82	5	67	32	16	21	29	1.95
853232--853263	9	3.7	9	91	8	57	71	18	0	9	1.12
853233--853262	8	3.6	8	95	4	51	70	20	0	10	1.16
853230--853293	28	2.2	29	83	8	78	76	14	0	9	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853232--853292	9	6.7	9	76	10	52	75	14	0	9	1.04
855420--855581	7	22.6	7	68	7	83	49	33	0	17	1.47
855404--855668	58	4.4	57	75	15	218	49	31	1	18	1.55
855506--855581	35	2.1	37	92	4	129	48	32	0	18	1.48
855557--855668	14	7.7	14	68	13	57	49	31	2	16	1.60
855420--855668	123	2.0	123	84	7	328	48	32	1	17	1.55
855599--855642	22	2.0	21	86	4	61	43	31	6	18	1.76
855448--855642	95	2.1	95	87	1	277	47	31	1	18	1.58
855727--855765	20	1.9	21	89	5	62	56	28	0	15	1.40
860445--860478	18	1.9	17	94	5	59	41	0	0	58	0.98
860446--860486	18	2.4	17	84	8	55	46	0	0	53	1.00
864962--865097	64	2.1	64	91	1	218	22	18	14	44	1.86
867903--868005	37	3.2	30	78	18	125	32	0	8	58	1.35
867904--867995	18	5.5	16	69	18	71	32	1	8	57	1.36
867930--868010	37	2.2	37	97	0	153	28	1	9	60	1.36
867904--867965	30	2.1	29	90	6	97	33	1	8	56	1.38
869061--869113	3	17.7	3	92	7	90	32	0	0	67	0.91
876395--876624	55	4.1	56	79	5	234	45	12	13	29	1.80
876395--876624	111	2.1	111	83	3	284	45	12	13	29	1.80
878257--878425	35	4.9	34	76	7	110	50	10	18	20	1.76
878325--878502	68	2.6	67	77	6	153	54	8	15	20	1.68
878487--878692	70	2.9	70	78	5	204	50	13	17	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
878487--878606	35	3.4	35	74	4	116	50	10	19	20	1.76
878533--878638	35	3.0	35	82	5	142	49	11	18	20	1.78
878954--879046	35	2.7	35	83	6	134	39	9	26	23	1.86
880095--880174	23	3.5	23	83	6	99	30	18	22	28	1.98
880094--880185	46	2.0	46	86	0	130	30	17	22	29	1.97
880099--880186	23	3.8	23	77	8	90	32	17	20	29	1.95
880232--880294	23	2.7	23	77	0	63	31	19	22	26	1.97
880051--880361	120	2.6	119	76	9	301	30	15	23	30	1.95
880566--880634	27	2.6	27	80	11	70	7	11	1	79	0.98
882590--882645	17	2.9	19	80	17	71	8	7	1	82	0.92
883034--883092	26	2.3	26	83	13	79	3	6	11	77	1.07
887532--887574	8	5.4	8	83	10	61	13	0	32	53	1.41
887516--887575	24	2.5	24	83	0	75	18	3	28	50	1.63
887498--887620	16	7.5	16	71	9	70	18	5	30	45	1.73
887538--887588	24	2.1	24	85	7	68	15	3	35	45	1.65
888091--888118	3	9.3	3	100	0	56	67	0	0	32	0.91
894150--894218	26	2.7	26	75	4	68	43	15	10	30	1.80
894105--894229	26	4.6	26	67	11	61	38	16	12	33	1.85
894536--894697	84	1.9	84	93	0	279	37	11	12	37	1.81
894831--894885	22	2.5	22	82	5	67	32	16	21	29	1.95
897306--897540	28	8.5	28	67	19	111	48	31	2	17	1.60
897400--897473	7	10.4	7	72	8	60	48	35	0	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897386--897437	21	2.5	21	87	6	70	53	28	0	17	1.44
897407--897545	14	9.7	14	69	12	77	47	33	2	16	1.61
897619--897674	14	3.8	15	72	11	53	48	28	3	19	1.66
903377--903422	15	2.9	16	78	18	51	52	0	4	43	1.21
903759--903815	27	2.1	27	100	0	114	17	3	10	68	1.33
905222--905289	30	2.3	30	87	5	93	47	0	10	42	1.37
905236--905298	30	2.1	31	88	8	94	46	0	4	49	1.23
906914--906948	3	11.7	3	93	0	61	65	2	0	31	1.07
907667--907714	23	2.0	24	84	4	62	56	2	6	35	1.36
907836--907884	21	2.3	21	82	0	53	57	8	8	26	1.56
909685--909712	14	2.0	14	100	0	56	42	7	0	50	1.30
910063--910088	3	8.7	3	100	0	52	30	34	0	34	1.58
915129--915168	20	2.0	20	85	5	53	45	7	15	32	1.74
915070--915218	76	2.0	75	81	5	176	39	6	16	36	1.75
919748--919782	18	2.0	17	88	5	52	22	0	2	74	0.95
919886--919930	14	3.1	14	90	3	72	31	2	8	57	1.41
919886--919932	15	3.2	15	84	6	69	31	2	8	57	1.41
929423--929460	15	2.5	15	87	12	51	5	18	7	68	1.34
930349--930506	59	2.5	62	74	13	146	35	10	6	47	1.64
932128--932170	17	2.6	16	85	3	59	27	9	18	44	1.80
932891--932964	8	9.5	8	75	16	66	12	16	0	71	1.14
932891--932964	17	4.8	16	70	16	66	12	16	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932890--932946	25	2.3	25	79	14	64	12	17	0	70	1.17
932916--932958	12	3.2	12	79	20	50	9	13	0	76	1.01
933883--933925	23	2.0	23	86	9	63	53	16	2	27	1.55
936884--936932	23	2.2	23	85	7	66	38	4	8	48	1.52
943906--944140	86	2.7	85	81	5	249	37	14	17	29	1.90
944000--944175	86	2.0	86	80	4	194	39	14	17	28	1.88
944300--944429	55	2.4	54	80	6	145	42	17	19	20	1.90
945253--945316	10	6.6	10	77	8	53	1	7	9	81	0.94
945268--945315	13	3.7	13	75	10	53	2	2	12	83	0.83
945587--945638	11	5.0	10	79	6	50	7	11	0	80	0.89
945599--945650	24	2.1	26	86	13	74	9	9	0	80	0.90
945599--945641	22	2.0	22	86	9	61	6	9	0	83	0.80
949271--949309	20	1.9	21	85	15	55	43	5	10	41	1.61
954163--954228	16	3.5	19	74	16	57	22	3	1	72	1.06
954167--954214	24	2.0	25	83	4	62	22	2	2	72	1.05
961772--961804	12	2.8	12	90	0	57	24	15	6	54	1.63
968774--968882	48	2.2	50	80	8	125	30	9	6	54	1.57
969591--969742	14	10.4	14	65	23	55	67	3	8	20	1.34
969618--969742	27	4.6	27	74	14	62	68	4	8	20	1.32
974408--974432	10	2.5	10	100	0	50	48	8	0	44	1.32
975652--975807	44	3.6	44	82	5	156	23	10	10	55	1.65
975668--975780	21	5.2	21	63	22	54	21	10	10	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984013--984052	14	2.9	14	86	13	57	77	0	22	0	0.77
984159--984270	21	5.4	21	76	10	104	62	1	8	26	1.35
984202--984268	19	3.4	19	81	4	71	62	1	5	29	1.28
984262--984337	41	1.9	37	82	15	91	67	2	13	17	1.35
985175--985216	18	2.3	19	91	4	68	42	26	2	28	1.67
989175--989207	2	16.5	2	93	0	57	48	0	3	48	1.17
990164--990192	2	14.5	2	100	0	58	0	48	0	51	1.00
992056--992107	26	2.0	27	92	3	88	44	0	7	48	1.31
992094--992179	18	4.9	18	72	18	58	50	1	1	47	1.16
992271--992310	21	1.9	21	89	0	62	45	0	2	52	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106