genome.fa.s57.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  60  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10760947--10760989	18	2.4	18	88	7	61	41	37	0	20	1.53
10763637--10763683	24	2.0	24	86	0	67	14	17	23	44	1.85
10763743--10763810	31	2.2	31	89	5	102	27	7	29	35	1.84
10779204--10779273	12	5.7	11	73	18	50	34	0	1	64	1.03
10781091--10781127	15	2.5	15	90	0	56	35	24	8	32	1.85
10781627--10781749	44	2.8	43	77	1	129	30	10	15	43	1.80
10782770--10782827	4	14.8	4	75	10	57	27	1	3	67	1.17
10782735--10782789	27	2.0	27	82	6	67	16	7	5	70	1.28
10782779--10782823	15	2.9	15	83	6	54	28	2	2	66	1.15
10783078--10783123	17	2.7	17	75	18	51	26	0	13	60	1.32
10783087--10783126	17	2.2	17	91	8	62	27	0	10	62	1.27
10784399--10784432	11	3.1	11	82	0	50	79	0	14	5	0.91
10784391--10784438	22	2.3	20	78	7	60	75	0	16	8	1.04
10786931--10786985	19	2.7	21	77	13	60	30	5	14	49	1.66
10787197--10787255	11	5.4	11	75	15	50	38	23	5	32	1.77
10791550--10791594	17	2.6	17	89	6	65	42	4	0	53	1.21
10815030--10815118	3	29.7	3	78	8	92	62	0	3	33	1.11
10815211--10815253	17	2.5	16	88	11	59	41	39	2	16	1.61
10815211--10815244	17	1.9	18	94	5	61	44	38	0	17	1.49
10816148--10816190	17	2.5	17	85	7	52	23	2	0	74	0.93
10816497--10816534	3	12.7	3	86	10	51	68	2	0	28	1.03
10816711--10816780	36	1.9	36	85	5	97	51	28	4	15	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10816753--10816881	29	4.4	29	74	10	120	45	27	3	23	1.67
10816764--10816907	29	5.0	29	75	7	114	45	26	2	25	1.67
10816828--10816925	29	3.4	28	77	8	90	47	26	3	22	1.65
10821633--10821695	27	2.4	26	81	2	72	57	0	6	36	1.24
10822588--10822652	22	2.6	25	79	18	82	50	0	0	49	1.00
10823666--10823691	2	13.0	2	100	0	52	50	0	0	50	1.00
10825610--10825649	3	13.3	3	100	0	80	67	0	0	32	0.91
10841985--10842028	6	7.7	6	87	10	65	50	11	0	38	1.39
10841976--10842028	16	3.2	16	86	5	70	49	9	1	39	1.46
10841976--10842033	22	2.6	22	91	0	89	48	8	3	39	1.51
10842428--10842452	2	12.5	2	100	0	50	48	0	0	52	1.00
10843063--10843122	32	1.9	30	81	18	70	61	5	3	30	1.33
10845867--10845900	16	2.1	16	89	10	52	58	0	0	41	0.98
10846390--10846420	15	2.1	15	93	0	53	6	29	16	48	1.70
10846567--10846612	20	2.3	20	96	0	83	19	21	15	43	1.87
10851710--10851738	11	2.6	11	100	0	58	51	20	6	20	1.70
10854194--10854249	7	7.6	7	79	13	51	78	0	8	12	0.96
10854198--10854266	8	8.5	8	78	13	70	73	0	10	15	1.08
10855465--10855671	107	1.9	109	89	3	321	35	9	16	38	1.81
10855973--10856033	31	1.9	32	83	3	79	40	14	4	39	1.68
10856073--10856109	18	2.1	18	89	0	56	43	16	8	32	1.77
10856435--10856484	20	2.7	18	79	14	57	22	4	6	68	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10857944--10857987	22	2.0	22	82	8	54	29	18	31	20	1.96
10867809--10867847	17	2.4	17	87	12	55	25	2	20	51	1.60
10868286--10868318	2	16.5	2	100	0	66	0	48	0	51	1.00
10869365--10869406	9	4.8	9	82	11	52	2	21	0	76	0.90
10875585--10875615	13	2.3	14	94	5	55	12	12	0	74	1.08
10875957--10875997	22	1.9	21	90	5	64	75	0	0	24	0.80
10880027--10880114	29	3.0	30	82	9	94	51	0	0	48	1.00
10891253--10891330	29	2.8	29	83	11	92	52	0	0	47	1.00
10894099--10894215	24	5.2	24	78	14	115	53	5	3	37	1.40
10894060--10894240	64	2.8	64	84	6	228	54	6	3	35	1.43
10894126--10894316	104	1.8	103	83	8	253	53	8	3	34	1.50
10894330--10894399	21	3.3	20	78	7	77	52	8	5	32	1.55
10894349--10894383	17	2.1	16	89	5	52	54	8	5	31	1.54
10898166--10898204	20	1.9	21	84	5	53	53	2	10	33	1.48
10898512--10898539	2	14.0	2	100	0	56	50	0	0	50	1.00
10906677--10906707	2	15.5	2	100	0	62	51	0	0	48	1.00
10907100--10907135	18	2.0	18	88	0	54	41	0	5	52	1.24
10907885--10907916	3	10.7	3	100	0	64	65	0	0	34	0.93
10912768--10912793	3	8.7	3	100	0	52	30	0	0	69	0.89
10915630--10915660	3	10.3	3	100	0	62	32	0	32	35	1.58
10920005--10920064	31	1.9	31	86	6	86	30	5	11	53	1.58
10925834--10925877	23	1.9	23	81	9	54	61	6	2	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10925984--10926016	16	2.1	17	88	11	52	51	0	0	48	1.00
10926109--10926156	20	2.4	20	78	0	60	58	0	0	41	0.98
10931532--10933391	162	11.6	160	74	7	1080	43	13	8	34	1.75
10931532--10933353	642	2.8	639	80	5	1820	43	13	8	33	1.75
10931519--10933427	480	4.0	482	76	5	1503	43	13	8	33	1.75
10938247--10938278	15	2.1	15	94	0	55	50	18	6	25	1.70
10941949--10942010	32	2.0	32	87	3	90	32	1	1	64	1.13
10948734--10948768	11	3.2	11	95	0	61	14	2	0	82	0.77
10948903--10948967	21	3.1	21	77	4	69	70	1	0	27	0.96
10948940--10948967	10	2.8	10	100	0	56	82	0	0	17	0.68
10949951--10949983	17	2.0	16	94	5	57	6	0	3	90	0.52
10949932--10949994	28	2.1	31	83	13	80	11	3	4	80	0.97
10949952--10949990	8	4.6	8	84	9	51	10	0	2	87	0.65
10949953--10949990	17	2.2	17	86	9	51	10	0	2	86	0.66
10949949--10950004	26	2.2	26	83	6	69	14	0	3	82	0.81
10949949--10950001	27	2.0	26	82	10	63	13	0	3	83	0.79
10950000--10950051	21	2.5	21	81	15	63	34	3	1	59	1.27
10950000--10950049	24	2.1	24	82	14	59	34	4	2	60	1.27
10950183--10950232	22	2.2	24	78	10	59	40	20	4	36	1.71
10950267--10950434	49	3.4	49	74	3	140	38	20	11	29	1.88
10950291--10950442	49	3.1	49	74	3	153	37	21	12	28	1.90
10950428--10950457	11	2.7	11	89	0	51	33	30	26	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10950521--10950562	13	3.2	13	74	12	50	40	21	9	28	1.84
10950511--10950562	26	2.0	26	100	0	104	42	19	7	30	1.79
10950456--10950607	75	2.0	76	88	5	227	39	18	10	31	1.85
10950537--10950852	50	6.4	48	77	10	230	38	19	10	31	1.86
10950540--10950852	98	3.2	98	76	7	314	38	19	10	30	1.86
10951015--10951669	99	6.6	99	81	5	651	41	21	13	23	1.89
10951046--10951669	197	3.1	198	84	4	731	40	21	14	23	1.90
10952020--10952107	35	2.5	35	90	0	140	40	14	10	34	1.80
10952258--10952301	20	2.2	20	84	8	54	25	31	2	40	1.68
10956646--10956682	19	2.1	18	90	10	58	8	0	13	78	0.96
10961739--10961824	16	5.5	15	78	6	73	18	1	32	47	1.56
10961769--10961829	31	2.0	31	86	0	86	21	0	29	49	1.50
10961769--10961831	7	8.0	8	70	16	51	22	0	30	47	1.51
10962103--10962141	3	13.0	3	100	0	78	33	0	0	66	0.92
10963363--10963400	18	2.1	19	90	5	60	52	0	0	47	1.00
10963360--10963399	21	2.0	20	95	5	71	52	0	0	47	1.00
10963508--10963970	145	3.2	142	84	3	570	44	11	22	20	1.84
10963756--10964075	36	9.1	35	66	10	134	45	11	21	21	1.82
10963901--10964033	35	4.0	32	75	11	99	46	12	21	20	1.82
10963902--10964176	66	4.0	67	73	7	205	45	12	21	20	1.84
10963759--10964182	210	2.0	210	91	2	692	45	11	21	20	1.83
10964357--10964427	36	2.0	36	85	0	97	47	11	16	23	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10964617--10964700	34	2.5	34	86	0	105	53	10	15	20	1.71
10964622--10964682	19	3.4	18	72	17	56	54	8	14	22	1.67
10966205--10966258	15	3.8	15	80	11	69	7	3	5	83	0.91
10966204--10966272	11	6.5	11	78	5	52	5	5	4	84	0.88
10977797--10977838	15	2.9	14	86	10	57	19	0	33	47	1.49
10977797--10977987	16	12.4	15	68	17	63	24	1	27	46	1.62
10977899--10977965	32	2.1	32	86	5	91	23	1	23	50	1.57
10977876--10977987	48	2.4	45	82	8	136	24	1	24	50	1.59
10977946--10977979	7	4.7	7	96	3	59	17	0	23	58	1.38
10977908--10977980	14	4.7	15	77	11	76	23	1	23	52	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106