genome.fa.s57.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  43  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7565133--7565181	24	2.0	24	84	0	62	51	2	0	46	1.12
7565214--7565289	23	3.3	21	74	15	62	47	2	1	48	1.24
7565374--7565409	15	2.5	14	90	4	54	44	2	0	52	1.15
7565817--7565873	19	2.7	22	76	17	68	42	5	0	52	1.24
7566891--7566953	19	3.2	18	75	22	56	58	1	3	36	1.23
7567052--7567108	28	2.0	28	83	6	71	45	1	1	50	1.22
7567885--7567965	12	6.4	13	74	20	50	48	3	1	46	1.27
7567941--7567990	23	2.2	23	82	7	57	48	0	4	48	1.20
7568225--7568300	26	2.9	26	80	5	82	47	2	3	46	1.35
7568234--7568316	18	4.7	17	70	16	53	51	2	1	44	1.22
7568435--7568474	20	2.0	21	85	5	55	42	2	0	55	1.13
7569586--7569916	162	2.0	163	83	4	409	41	6	9	43	1.62
7570064--7570102	19	2.1	19	85	9	53	48	2	2	46	1.29
7570181--7570225	23	2.0	23	86	0	63	57	2	0	40	1.11
7570434--7570480	24	1.9	24	83	12	60	55	6	0	38	1.26
7570500--7570529	14	2.1	14	93	0	51	53	0	0	46	1.00
7570518--7570597	23	3.4	22	73	13	63	37	3	2	56	1.31
7570682--7570730	21	2.3	22	75	13	57	59	0	2	38	1.09
7570699--7570766	16	4.1	16	71	17	57	52	1	1	44	1.19
7570742--7570784	20	2.2	19	87	4	59	41	2	0	55	1.12
7570805--7570867	21	3.2	20	76	21	53	49	1	0	49	1.10
7571077--7571156	41	1.9	41	82	12	101	52	2	3	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7571379--7571431	19	2.7	19	79	2	52	45	3	0	50	1.19
7571402--7571452	21	2.4	21	83	9	59	49	3	0	47	1.20
7571627--7571682	27	2.0	28	86	10	80	46	0	3	50	1.19
7571622--7571689	27	2.6	26	82	15	79	48	0	2	48	1.16
7571670--7571745	22	3.3	22	72	18	66	52	0	1	46	1.08
7571839--7571917	16	5.4	15	74	16	60	56	1	0	41	1.07
7571809--7571868	5	11.8	5	72	10	50	58	1	3	36	1.25
7571804--7571897	19	5.1	19	67	27	51	56	1	2	40	1.18
7571863--7571905	14	2.9	14	83	12	59	58	0	0	41	0.98
7571846--7571922	13	5.7	13	73	15	50	57	1	0	41	1.07
7572377--7572421	14	3.0	15	83	9	56	40	0	4	55	1.20
7572945--7573025	19	4.2	19	68	21	60	50	1	1	46	1.17
7572943--7573029	16	5.3	15	69	20	50	51	1	1	45	1.16
7573165--7573210	25	1.9	23	86	8	65	52	2	0	45	1.13
7573509--7573564	28	2.0	27	86	10	78	46	0	3	50	1.19
7573736--7573805	33	2.1	33	84	10	90	47	2	0	50	1.16
7574841--7574905	33	2.1	29	86	11	85	50	0	0	49	1.00
7574860--7574924	19	3.5	18	80	17	71	50	1	1	46	1.20
7575279--7575369	21	4.4	21	73	20	59	46	2	2	49	1.26
7575877--7575923	16	2.9	17	78	15	55	36	4	0	59	1.17
7575964--7576013	24	2.0	25	84	3	66	50	2	0	48	1.12
7577032--7577075	14	3.1	14	80	9	54	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7577167--7577231	28	2.3	28	77	15	71	32	4	4	58	1.39
7577471--7577521	20	2.7	18	74	17	50	45	0	1	52	1.12
7578485--7578529	17	2.6	17	79	13	56	44	2	6	46	1.42
7577952--7578917	182	5.4	177	75	8	518	41	10	7	40	1.67
7578947--7578992	18	2.5	19	79	10	51	58	0	2	39	1.10
7580197--7580239	16	2.9	15	86	13	63	48	0	0	51	1.00
7580288--7580341	12	4.6	12	73	13	58	46	1	0	51	1.11
7580711--7581098	179	2.1	180	86	5	541	43	6	9	40	1.64
7581199--7581278	15	5.1	16	76	10	76	58	0	1	40	1.06
7581321--7581356	11	3.3	11	88	0	54	52	5	0	41	1.24
7581430--7581472	11	3.8	11	82	14	52	51	0	0	48	1.00
7581515--7581552	13	2.7	14	84	12	51	50	2	0	47	1.15
7581777--7581816	15	2.6	16	84	15	57	52	0	2	45	1.14
7582340--7582384	13	3.1	16	81	18	62	48	0	0	51	1.00
7582434--7582468	14	2.4	15	85	4	54	48	2	0	48	1.16
7582603--7582645	22	2.0	22	86	9	61	53	6	0	39	1.28
7582892--7582926	16	2.2	16	90	10	54	48	0	2	48	1.16
7582976--7583466	177	2.7	181	78	6	491	39	8	10	40	1.70
7584593--7584622	15	2.0	15	93	0	51	46	3	0	50	1.18
7584935--7584992	19	2.9	20	75	12	57	41	0	3	55	1.17
7585288--7585344	25	2.3	25	77	14	64	54	3	1	40	1.28
7585508--7585553	24	1.9	24	81	0	56	34	6	2	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7585574--7585617	21	2.2	20	91	4	70	61	4	0	34	1.16
7585882--7585918	19	1.9	19	88	0	56	56	0	0	43	0.99
7586399--7586447	15	3.3	15	82	0	53	46	0	2	51	1.12
7586526--7586595	25	2.7	25	84	10	79	47	2	2	47	1.32
7586787--7586836	22	2.3	22	82	6	57	42	2	4	52	1.31
7586947--7586999	10	5.3	10	81	4	63	41	0	0	58	0.98
7586986--7587025	13	3.1	13	85	10	55	50	0	0	50	1.00
7587325--7587372	15	3.0	16	79	14	55	45	2	0	52	1.12
7587725--7587777	25	2.2	23	81	15	63	56	0	1	41	1.10
7587740--7587789	20	2.5	20	86	0	64	52	0	0	48	1.00
7587768--7587845	14	5.9	14	71	19	53	47	0	0	52	1.00
7587774--7587826	23	2.4	22	75	12	54	47	0	0	52	1.00
7587807--7587862	19	3.1	19	73	14	55	51	0	0	48	1.00
7587825--7587863	15	2.5	15	83	4	51	48	0	0	51	1.00
7587839--7587868	12	2.4	13	94	5	53	50	0	0	50	1.00
7587747--7587869	51	2.5	47	73	11	113	48	0	0	51	1.00
7588039--7588094	17	3.4	16	76	16	53	48	0	0	51	1.00
7588025--7588094	31	2.3	32	80	9	83	45	0	1	52	1.09
7588040--7588087	23	2.1	23	88	7	71	47	0	0	52	1.00
7588032--7588099	25	2.8	23	82	17	77	45	0	1	52	1.09
7589199--7589246	21	2.3	21	81	0	60	54	2	0	43	1.12
7589452--7589489	19	2.1	19	90	5	60	42	5	2	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7590006--7590040	12	2.9	12	87	12	54	51	0	0	48	1.00
7590160--7590220	17	3.4	17	79	16	70	44	0	0	55	0.99
7590173--7590237	26	2.6	25	85	2	85	46	0	0	53	1.00
7591094--7591141	24	2.0	24	88	12	71	54	2	2	41	1.24
7591355--7591380	10	2.6	10	100	0	52	53	0	0	46	1.00
7602269--7602334	20	3.1	20	82	12	71	60	0	1	37	1.06
7602304--7602342	20	2.0	20	94	0	69	66	0	0	33	0.92
7606881--7607598	355	2.0	356	88	2	1068	35	12	15	37	1.85
7616386--7616414	2	14.5	2	100	0	58	51	0	0	48	1.00
7624044--7624077	16	2.1	16	88	0	50	70	2	17	8	1.25
7629139--7629168	11	2.7	11	100	0	60	20	0	26	53	1.46
7629193--7629349	52	3.0	52	85	1	190	40	8	24	26	1.84
7630217--7630244	11	2.5	11	100	0	56	21	0	25	53	1.46
7630271--7630427	52	3.0	52	84	1	181	41	8	23	26	1.82
7631298--7631325	11	2.5	11	100	0	56	21	0	25	53	1.46
7631352--7631506	51	3.0	51	87	2	204	41	9	23	26	1.84
7632374--7632401	11	2.5	11	100	0	56	21	0	25	53	1.46
7632428--7632584	52	3.0	52	86	3	192	41	8	22	27	1.83
7633462--7633489	11	2.5	11	100	0	56	21	0	25	53	1.46
7633514--7633667	51	3.0	51	86	3	195	40	9	24	25	1.84
7634541--7634570	11	2.7	11	100	0	60	20	0	26	53	1.46
7634595--7634751	52	3.0	52	87	1	199	42	8	22	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7638571--7638666	46	2.1	46	94	0	165	42	11	7	38	1.69
7641612--7641689	13	5.9	14	72	17	51	47	14	5	33	1.66
7641633--7641703	26	2.7	26	79	14	67	49	14	2	33	1.58
7641688--7641721	18	1.9	17	88	5	50	55	8	0	35	1.31
7642027--7642288	41	6.3	41	82	7	255	52	10	5	31	1.59
7642028--7642390	20	18.4	20	72	18	255	52	10	5	31	1.59
7642028--7642288	102	2.5	103	86	4	330	52	10	5	31	1.59
7642069--7642390	63	5.1	61	78	12	296	52	10	5	31	1.59
7642266--7642351	32	2.7	32	92	1	136	56	9	5	27	1.53
7643310--7643485	42	4.1	41	82	5	199	39	20	11	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106