genome.fa.s57.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  40  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7441339--7441398	15	3.8	16	76	20	56	43	0	1	55	1.10
7441535--7441589	25	2.2	26	86	3	76	47	0	1	50	1.11
7441490--7441593	55	1.9	53	83	13	131	46	1	1	50	1.23
7441582--7441636	22	2.6	21	76	18	60	54	1	0	43	1.10
7441606--7441650	16	3.1	15	75	24	51	53	0	0	46	1.00
7441698--7441753	15	3.7	15	72	18	53	55	0	3	41	1.17
7441708--7441750	19	2.4	17	84	11	50	53	0	4	41	1.21
7441708--7441753	17	2.6	18	81	18	53	54	0	4	41	1.20
7441744--7441785	21	2.0	21	81	9	50	47	0	0	52	1.00
7441745--7441803	15	3.5	17	77	13	61	42	1	0	55	1.09
7441938--7442019	12	6.6	12	72	14	60	50	1	1	47	1.16
7441930--7442018	29	3.0	29	73	18	76	49	2	1	47	1.21
7442416--7442476	24	2.6	23	78	2	68	47	1	1	49	1.21
7442965--7443015	18	2.8	19	77	11	54	45	0	0	54	0.99
7443267--7443311	15	3.1	14	90	6	63	53	0	0	46	1.00
7443318--7443362	14	3.1	14	81	9	54	51	0	0	48	1.00
7443269--7443369	14	7.0	14	68	25	50	53	0	0	46	1.00
7443443--7443494	12	4.3	12	77	22	56	50	0	1	48	1.12
7443388--7443486	24	4.0	25	75	20	102	53	1	0	45	1.07
7443399--7443511	45	2.5	45	80	12	117	48	2	1	46	1.26
7443595--7443763	22	8.1	21	67	22	74	46	2	0	50	1.18
7443721--7443789	27	2.4	30	83	11	90	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7443831--7443868	18	2.1	19	90	5	60	39	2	7	50	1.46
7444035--7444083	24	2.0	24	85	14	66	46	0	2	51	1.12
7444137--7444195	26	2.3	25	77	13	66	52	1	1	44	1.21
7444311--7444364	19	2.9	18	83	13	65	64	0	0	35	0.94
7444312--7444370	9	6.2	9	76	9	55	64	1	0	33	1.04
7444322--7444416	33	3.0	31	78	13	88	58	1	1	38	1.12
7444369--7444467	7	13.9	7	68	26	57	50	1	4	44	1.27
7444369--7444442	20	4.0	19	76	15	66	51	1	2	44	1.24
7444675--7444718	15	2.9	15	89	3	61	52	2	0	45	1.13
7445019--7445080	27	2.3	28	86	10	85	43	1	3	51	1.27
7445152--7445204	18	3.0	18	75	10	56	47	1	0	50	1.12
7451846--7453248	181	7.8	181	77	7	1200	40	7	10	41	1.68
7451816--7453250	538	2.7	539	78	9	1280	40	7	10	41	1.68
7453167--7453340	92	1.9	91	83	1	222	43	10	12	33	1.76
7453258--7454436	179	6.6	176	77	9	946	41	9	9	40	1.69
7453931--7454436	177	2.8	178	81	5	545	41	9	9	40	1.69
7457106--7457138	18	1.9	17	88	11	50	48	6	6	39	1.53
7456646--7457728	181	6.0	179	76	8	876	41	8	9	41	1.66
7456644--7457668	362	2.9	353	80	7	1088	41	7	9	41	1.65
7457514--7457957	229	1.9	228	82	1	557	39	9	8	41	1.69
7457740--7458182	180	2.4	181	81	5	493	40	8	8	43	1.64
7459073--7459105	12	2.5	13	90	9	50	51	3	3	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7459107--7459163	25	2.4	23	86	13	73	47	1	3	47	1.29
7459110--7459192	29	3.0	28	75	16	77	45	2	2	49	1.28
7459291--7459372	33	2.5	33	77	13	89	45	2	2	50	1.28
7459346--7459416	19	4.0	19	70	20	55	56	1	0	42	1.08
7459522--7459575	17	3.1	17	80	12	56	55	0	0	44	0.99
7459733--7459784	21	2.6	21	74	17	56	46	0	3	50	1.20
7459754--7459799	15	3.1	15	82	11	51	47	0	2	50	1.13
7459884--7459935	23	2.3	23	84	15	65	55	0	0	44	0.99
7460128--7460214	20	4.3	20	66	22	56	44	2	2	50	1.27
7460256--7460333	40	1.9	39	82	10	95	43	2	8	44	1.49
7460968--7461043	16	4.9	14	73	19	53	52	1	3	42	1.28
7461128--7461167	19	2.0	20	90	4	64	42	5	0	52	1.23
7461389--7461894	181	2.8	183	80	10	558	39	7	11	42	1.68
7461379--7462016	181	3.6	177	76	9	537	39	8	10	42	1.70
7462504--7462567	16	4.0	16	82	11	78	53	1	1	43	1.19
7462938--7462986	25	1.9	25	84	12	64	38	2	0	59	1.09
7464158--7464197	20	2.0	20	85	9	55	52	2	2	42	1.28
7464869--7464911	10	4.4	9	85	5	50	44	0	4	51	1.22
7465384--7465488	9	11.2	9	70	15	61	38	1	3	56	1.29
7465425--7465482	17	3.8	16	82	10	68	39	0	0	60	0.97
7465434--7465497	29	2.2	29	81	10	78	43	0	0	56	0.99
7465441--7465514	26	2.7	27	78	11	71	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7465585--7465624	15	2.7	15	88	3	55	50	2	2	45	1.28
7465646--7465686	21	2.0	20	90	4	64	51	0	2	46	1.14
7465772--7465825	23	2.3	23	83	3	63	38	1	3	55	1.28
7465795--7465875	34	2.4	34	82	13	105	50	1	0	48	1.08
7465847--7465880	16	2.1	16	88	0	50	50	0	0	50	1.00
7466092--7466178	14	6.6	14	70	15	60	45	1	2	50	1.21
7466256--7466321	34	1.9	34	82	11	82	45	0	4	50	1.22
7466303--7466338	15	2.3	16	90	4	56	52	0	0	47	1.00
7466384--7466433	16	3.2	16	80	5	57	40	2	0	58	1.10
7466562--7466606	18	2.4	18	85	3	54	37	4	2	55	1.32
7466895--7466927	17	2.0	17	88	5	50	54	0	9	36	1.32
7468288--7468357	23	3.2	22	73	19	65	44	4	2	48	1.37
7468290--7468357	20	3.2	20	75	18	66	44	4	2	48	1.38
7468713--7468754	21	2.0	21	81	9	50	54	0	0	45	0.99
7468746--7469060	174	1.8	174	98	0	612	40	9	9	40	1.70
7469277--7469318	8	4.7	9	80	19	52	57	0	0	42	0.99
7469277--7469317	18	2.3	18	91	8	66	56	0	0	43	0.99
7469280--7469319	21	1.9	21	84	0	53	57	0	0	42	0.98
7469280--7469321	11	3.9	11	84	6	50	57	0	0	42	0.99
7469708--7469754	17	2.8	17	84	12	62	48	0	0	51	1.00
7469707--7469772	26	2.4	27	75	12	73	51	0	0	48	1.00
7469875--7469925	20	2.5	21	72	15	54	54	0	1	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7470299--7470352	27	2.0	28	88	3	83	46	7	0	46	1.31
7471499--7471624	35	3.5	35	70	17	98	47	1	3	46	1.30
7471562--7471637	27	2.9	26	76	7	82	51	1	2	44	1.23
7471607--7471657	16	3.3	16	75	24	56	50	0	0	49	1.00
7472046--7472104	14	4.3	14	77	18	54	47	3	0	49	1.18
7471987--7472104	20	6.1	20	67	24	58	45	3	1	49	1.28
7472100--7472146	19	2.3	20	85	7	60	44	0	4	51	1.21
7472401--7472443	20	2.0	20	86	8	59	51	2	2	44	1.27
7472469--7472513	19	2.3	20	82	17	60	40	0	0	60	0.97
7472815--7472876	21	2.8	24	78	14	69	48	3	1	46	1.28
7473094--7473432	176	1.9	175	82	5	416	40	7	9	42	1.66
7473559--7473622	20	3.0	20	79	6	65	48	1	0	50	1.10
7473582--7473620	14	2.7	14	88	4	51	53	0	0	46	1.00
7474386--7474419	17	2.0	17	88	0	50	52	0	0	47	1.00
7474399--7474433	13	2.8	13	87	12	56	54	0	0	45	0.99
7474390--7474446	24	2.4	26	77	16	61	52	1	0	45	1.11
7474932--7474983	26	2.0	25	88	3	77	46	0	0	53	1.00
7475511--7475629	20	5.8	20	76	17	77	51	0	0	47	1.06
7475501--7475629	15	8.9	15	74	18	80	51	0	0	48	1.06
7475565--7475632	23	2.9	24	78	10	61	52	0	0	47	1.00
7476388--7476430	18	2.4	18	88	7	61	46	2	0	51	1.13
7477116--7479347	181	12.4	181	75	6	1576	41	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7479788--7479852	31	2.1	31	86	11	89	44	0	3	52	1.16
7479806--7479853	13	3.5	13	80	8	51	47	0	2	50	1.12
7480221--7480264	22	2.0	22	95	0	79	31	11	13	43	1.80
7480364--7480907	277	2.0	279	90	1	869	43	11	15	29	1.81
7482396--7482459	24	2.7	25	84	13	75	53	0	0	46	1.00
7482414--7482459	22	2.0	22	87	8	65	56	0	0	43	0.99
7482681--7483758	180	6.1	179	76	9	905	42	10	7	40	1.66
7483726--7483799	36	2.1	36	94	0	130	50	6	4	39	1.48
7483839--7484151	171	1.8	171	82	4	407	40	10	8	39	1.71
7485315--7485375	21	2.8	23	74	25	69	47	8	3	40	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106