genome.fa.s35.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  1  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994--1822	429	1.9	428	85	3	1157	31	15	24	28	1.96
8159--8194	17	2.1	18	89	5	56	66	0	2	30	1.06
14821--14867	8	5.6	8	79	18	51	2	6	6	85	0.82
14823--14861	14	2.8	14	84	0	51	2	5	7	84	0.84
15256--15289	16	2.1	16	89	10	52	82	2	14	0	0.79
15531--15746	46	4.7	46	81	4	211	31	11	14	42	1.81
16863--17165	59	5.0	58	82	10	362	33	11	6	47	1.67
16863--17162	117	2.5	119	85	8	394	34	11	7	47	1.67
17183--17253	5	14.4	5	78	19	62	77	0	5	16	0.95
17173--17318	30	5.2	27	73	17	102	73	2	4	19	1.14
17183--17268	29	2.9	28	83	15	93	75	0	5	18	1.00
17206--17259	10	5.7	9	83	14	56	79	0	3	16	0.87
17183--17318	20	6.9	18	70	23	64	73	2	4	19	1.13
17173--17318	13	10.4	13	72	15	87	73	2	4	19	1.14
17174--17246	35	2.1	35	82	14	89	76	0	5	17	0.97
18302--18416	6	18.2	6	70	26	53	60	5	0	33	1.19
18306--18399	31	2.8	34	76	15	97	58	5	0	36	1.21
18604--18648	8	5.6	8	82	10	56	6	0	4	88	0.61
18656--18989	41	8.1	41	86	7	446	37	21	17	23	1.94
18656--18989	82	4.1	80	90	5	499	37	21	17	23	1.94
19993--20090	8	11.6	8	93	5	151	11	12	0	76	1.02
20086--20124	17	2.2	17	86	9	51	28	15	10	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21017--21052	9	4.0	9	96	0	63	22	13	22	41	1.89
21018--21059	9	4.6	9	93	3	57	23	16	23	35	1.95
21351--21517	82	2.0	82	98	0	325	26	27	13	31	1.94
25078--25107	15	2.1	14	93	6	51	6	36	6	50	1.55
30612--31079	59	7.7	59	82	10	529	34	11	5	48	1.63
30612--31097	61	7.9	60	80	10	508	34	11	5	48	1.63
31116--31190	5	14.4	5	80	15	73	80	1	4	14	0.93
31104--31205	22	4.7	21	75	15	59	76	0	5	16	1.03
31106--31191	6	14.7	6	75	19	58	79	1	4	15	0.96
31119--31191	31	2.3	31	86	6	94	80	1	4	13	0.92
31214--31268	24	2.3	24	84	6	67	80	5	1	12	0.97
32259--32385	3	41.3	3	71	21	54	62	4	0	33	1.16
32257--32372	50	2.4	48	77	16	123	62	4	0	33	1.15
32314--32382	16	4.5	15	75	10	68	66	2	0	30	1.06
32314--32387	37	2.0	37	84	10	98	66	4	0	29	1.10
33841--33901	13	4.6	13	76	8	52	72	0	3	24	1.00
33841--33891	7	7.6	7	82	8	52	72	0	1	25	0.95
38465--38505	3	13.7	3	100	0	82	34	0	0	65	0.93
38504--38551	3	16.0	3	86	0	60	41	0	25	33	1.55
38504--38551	15	3.2	15	90	0	69	41	0	25	33	1.55
40591--40635	20	2.4	19	85	7	56	46	6	0	46	1.29
40603--40645	20	2.3	19	88	8	61	48	4	2	44	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41263--41290	10	2.8	10	100	0	56	42	0	0	57	0.99
42813--42873	29	2.1	30	84	3	79	59	1	1	37	1.17
44662--44695	17	2.0	17	94	0	59	23	26	5	44	1.76
46381--46432	26	2.0	26	100	0	104	26	7	7	57	1.54
50680--50720	12	3.4	13	83	12	52	7	17	0	75	1.02
55574--55617	23	1.9	23	86	9	63	70	2	25	2	1.10
64143--64176	10	3.4	10	87	0	50	44	2	0	52	1.16
66881--66922	15	2.8	15	85	7	50	78	2	11	7	1.04
68574--68620	23	2.0	24	91	4	78	31	10	17	40	1.83
68583--68636	23	2.3	23	83	3	63	33	14	14	37	1.88
68730--68799	34	2.1	34	83	0	86	32	7	17	42	1.76
68757--68822	21	3.0	22	86	8	91	36	7	12	43	1.70
68765--68849	23	3.8	23	84	6	86	34	7	15	43	1.74
68843--68955	44	2.6	43	82	4	118	31	7	16	43	1.77
69091--69175	19	4.6	18	79	18	79	25	10	15	48	1.77
69116--69172	28	2.0	30	83	13	75	21	10	19	49	1.78
69265--69316	18	2.9	18	80	5	61	32	11	7	48	1.68
69351--69434	18	4.6	18	78	12	82	27	2	11	58	1.46
69330--69418	38	2.4	38	81	5	101	25	6	13	53	1.64
69357--69418	19	3.3	19	84	10	67	24	3	12	59	1.48
69396--69461	17	3.8	17	75	11	62	31	7	7	53	1.57
69939--69978	15	2.6	16	84	8	55	32	12	17	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71217--71287	35	2.0	35	91	0	115	32	4	9	53	1.53
71335--71403	28	2.4	29	81	11	81	27	0	11	60	1.31
71362--71414	21	2.6	20	91	5	88	26	0	13	60	1.33
71566--71592	6	4.5	6	100	0	54	33	0	18	48	1.49
82212--82306	47	2.0	47	91	0	154	22	23	15	38	1.92
82292--82444	51	3.0	51	97	0	279	22	17	18	41	1.90
84318--84365	22	2.2	21	96	3	87	35	12	4	47	1.60
84533--84558	2	13.0	2	100	0	52	50	0	0	50	1.00
85296--85398	37	2.9	36	75	21	101	52	0	0	47	1.00
85293--85405	18	6.3	17	78	13	86	52	0	0	46	1.06
85314--85355	15	2.7	15	85	7	57	54	0	0	45	0.99
85440--85705	15	16.8	15	70	19	159	40	0	1	56	1.15
85445--85673	13	17.9	13	67	21	94	42	0	1	55	1.16
85441--85597	52	3.0	51	75	16	142	42	0	1	56	1.07
85445--85627	78	2.4	77	81	9	194	42	0	1	55	1.14
85526--85576	18	2.6	21	72	18	54	43	0	0	56	0.99
87936--87984	12	4.2	12	85	10	57	44	0	2	53	1.12
88059--88105	11	4.4	11	78	2	51	51	4	0	44	1.21
88075--88181	29	3.6	29	75	13	92	47	4	0	46	1.29
88017--88130	40	2.8	38	74	9	93	52	3	0	43	1.18
88014--88119	51	2.1	51	83	3	133	52	2	0	44	1.15
88084--88169	30	2.9	29	73	14	77	48	4	1	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88517--88596	37	2.2	37	82	8	92	50	2	2	45	1.28
88648--88829	21	8.7	21	75	8	122	41	1	6	50	1.38
88648--88750	41	2.5	39	81	10	116	40	0	6	51	1.35
88641--88803	20	8.0	20	72	10	89	41	0	6	51	1.33
88875--88921	22	2.1	22	84	7	60	55	0	6	38	1.26
88929--89123	29	6.7	28	69	15	112	51	1	5	42	1.32
89111--89268	20	7.7	21	78	4	144	46	1	5	46	1.35
89101--89268	43	4.1	41	74	11	132	46	1	4	47	1.34
89074--89268	21	9.3	21	74	9	157	46	1	5	46	1.34
91664--91690	4	6.8	4	100	0	54	22	0	0	77	0.76
94084--94438	60	6.0	59	88	3	480	34	12	7	45	1.69
94083--94438	119	3.0	119	87	2	509	34	12	7	45	1.70
96821--96918	50	2.0	50	81	4	117	9	35	3	52	1.49
97549--97614	1	66.0	1	81	0	78	6	0	3	90	0.52
97549--97614	16	4.0	16	88	5	96	6	0	3	90	0.52
97549--97614	25	2.6	25	90	2	96	6	0	3	90	0.52
97338--97652	131	2.4	131	83	3	387	30	12	9	46	1.74
97619--98110	41	12.0	41	90	5	728	37	21	17	23	1.94
102589--103003	59	7.0	58	86	6	528	34	12	7	46	1.70
114703--114838	42	3.2	42	74	6	139	33	13	10	42	1.79
116132--116174	3	14.3	3	100	0	86	32	0	0	67	0.91
118655--118679	12	2.1	12	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120330--120663	165	2.0	165	92	0	551	28	18	16	36	1.92
123131--123162	2	16.0	2	100	0	64	50	0	0	50	1.00
134926--134957	14	2.3	14	100	0	64	21	6	9	62	1.47
135198--135250	7	7.4	7	93	4	88	24	0	1	73	0.93
135528--135578	20	2.5	21	81	9	61	29	3	17	49	1.65
136241--137133	130	6.9	128	77	8	652	36	6	16	40	1.74
136241--137116	259	3.4	252	77	9	802	35	6	16	41	1.75
136364--137134	129	6.0	128	76	9	401	36	6	16	40	1.74
137231--137689	130	3.5	127	77	6	413	36	6	16	40	1.74
137701--140129	130	18.6	128	74	8	1337	37	7	14	40	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109