genome.fa.s35.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  69  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13700621--13700663	22	2.0	21	86	4	59	11	9	0	79	0.95
13711239--13711294	5	10.8	5	81	14	69	78	0	3	17	0.89
13711241--13711345	10	10.6	10	70	19	51	69	3	1	24	1.15
13712083--13712160	6	12.5	6	77	17	54	74	0	2	23	0.94
13712084--13712178	10	9.2	10	74	22	65	73	0	3	23	0.97
13712091--13712200	52	2.1	51	81	15	129	69	0	4	26	1.08
13712092--13712245	10	15.5	10	72	14	59	65	0	4	29	1.12
13712144--13712237	28	3.3	27	71	15	66	61	0	5	32	1.18
13712086--13712245	16	10.1	16	71	19	90	66	0	4	29	1.11
13716701--13716752	3	17.3	3	100	0	104	32	0	0	67	0.91
13718464--13718496	14	2.4	14	85	5	50	24	0	3	72	0.98
13719620--13720314	333	2.1	332	82	3	824	37	13	10	37	1.79
13721544--13721642	52	1.9	52	91	0	162	44	9	6	40	1.61
13723307--13723340	14	2.4	14	90	0	50	26	0	0	73	0.83
13724109--13724158	12	4.2	12	81	0	64	16	0	6	78	0.95
13724862--13724890	15	1.9	15	100	0	58	68	0	6	24	1.13
13726105--13726176	14	4.8	14	73	20	58	65	2	2	29	1.21
13726292--13726329	20	1.9	20	94	0	67	42	13	7	36	1.73
13727217--13727983	212	3.5	212	74	15	590	32	8	5	53	1.54
13727548--13727942	217	1.8	215	82	10	516	31	8	6	53	1.57
13727917--13727984	21	3.2	22	74	15	72	36	4	2	55	1.35
13727462--13728034	222	2.6	211	78	11	561	31	8	5	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13728400--13728437	17	2.2	18	85	4	51	26	7	5	60	1.46
13728136--13728960	220	3.8	216	75	7	706	30	9	6	54	1.57
13730027--13730095	25	2.5	28	77	11	81	52	1	1	44	1.19
13735067--13735110	22	2.0	22	100	0	88	54	4	0	40	1.21
13736625--13736672	11	4.4	11	83	0	60	43	10	2	43	1.50
13736616--13736722	22	4.9	22	83	4	99	39	8	6	45	1.60
13736614--13736733	22	5.5	22	83	4	89	40	9	6	44	1.63
13736704--13736778	22	3.5	22	71	10	55	34	10	6	48	1.64
13737232--13737279	18	2.7	18	80	0	60	25	0	6	68	1.12
13737307--13737340	17	1.9	18	88	5	52	14	2	2	79	0.97
13737260--13737381	59	2.2	57	81	11	137	26	3	3	67	1.22
13737842--13737889	20	2.4	20	89	0	69	39	29	22	8	1.83
13738291--13738422	6	22.8	6	67	21	59	17	3	3	76	1.04
13738287--13738378	16	5.6	17	75	17	72	20	2	3	73	1.07
13738354--13738427	11	7.0	11	75	15	50	13	5	1	79	0.96
13738288--13738427	16	8.6	16	72	16	67	17	3	2	76	1.05
13738362--13738422	25	2.5	25	80	12	74	13	3	1	81	0.88
13738442--13738727	59	4.9	58	84	8	375	44	7	13	34	1.72
13738435--13738727	117	2.5	116	90	5	446	45	7	12	34	1.72
13738453--13738727	57	4.7	56	84	11	367	43	7	13	34	1.73
13741273--13741305	17	2.1	16	88	11	50	57	0	3	39	1.14
13742529--13742560	16	2.0	16	93	0	55	68	0	9	21	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13749293--13749333	21	1.9	21	90	5	64	17	14	9	58	1.62
13750995--13751442	226	2.0	225	98	0	860	31	12	22	33	1.91
13754364--13755395	341	3.0	341	99	0	2027	44	9	8	38	1.66
13759221--13759263	21	2.0	21	90	0	68	20	11	16	51	1.75
13759761--13759815	22	2.4	23	82	8	60	7	20	9	63	1.47
13760300--13760657	145	2.5	140	79	8	329	40	9	13	36	1.78
13769441--13769635	90	2.2	90	95	0	356	22	15	17	44	1.87
13771587--13771663	38	2.0	38	85	5	102	32	9	24	33	1.87
13775499--13775559	16	3.6	16	75	16	68	62	8	0	29	1.24
13775486--13775559	36	2.1	36	94	0	130	62	10	0	27	1.28
13775551--13775603	22	2.3	23	81	9	56	49	0	7	43	1.31
13775999--13776049	16	2.9	18	77	19	54	47	1	3	47	1.32
13784251--13784300	19	2.6	19	81	9	57	56	12	6	26	1.58
13786656--13786705	15	3.3	15	83	13	50	68	0	2	30	1.01
13794432--13794476	18	2.3	21	85	14	69	26	6	0	66	1.16
13801094--13801134	18	2.2	20	91	8	68	19	0	39	41	1.52
13801206--13801299	18	5.1	19	75	17	74	15	5	34	44	1.70
13803649--13803714	16	3.9	16	72	20	53	77	1	18	3	0.98
13803664--13803709	11	4.1	11	81	13	58	76	0	21	2	0.90
13803648--13803705	24	2.4	24	85	0	71	75	1	20	1	0.97
13804732--13805033	94	3.3	94	83	2	344	31	17	15	34	1.92
13805397--13805444	22	2.2	22	84	0	60	22	14	33	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13805465--13805536	31	2.3	31	83	4	83	20	26	15	37	1.92
13805559--13805632	31	2.4	31	81	0	94	25	25	8	40	1.83
13806541--13806588	24	1.9	25	83	8	62	68	10	12	8	1.39
13808181--13808211	16	1.9	16	93	0	53	35	0	16	48	1.46
13809864--13809918	26	2.1	27	90	10	87	10	10	3	74	1.19
13809978--13810119	33	4.3	34	75	5	112	30	14	16	37	1.90
13810958--13811011	23	2.4	22	81	12	56	3	18	1	75	1.03
13811528--13811562	8	4.2	8	92	7	61	11	11	0	77	1.00
13811527--13811562	17	2.1	17	100	0	72	11	11	0	77	0.99
13812231--13812267	17	2.2	17	95	4	67	0	13	0	86	0.57
13812222--13812255	11	3.2	11	91	4	52	0	14	0	85	0.60
13816590--13816635	18	2.6	18	100	0	92	54	4	10	30	1.55
13817290--13817384	14	7.3	13	76	15	90	22	8	22	47	1.77
13817290--13817380	26	3.5	26	81	15	98	23	8	21	46	1.79
13817547--13817589	3	14.3	3	100	0	86	32	0	0	67	0.91
13819069--13819105	14	2.5	15	83	16	51	5	0	16	78	0.93
13819768--13819815	15	3.1	15	82	5	60	20	0	0	79	0.74
13819768--13819845	28	2.7	28	80	4	75	24	2	1	71	1.06
13825891--13825942	22	2.4	22	96	0	95	42	13	7	36	1.73
13827081--13827120	19	2.1	19	85	0	53	27	5	40	27	1.77
13827329--13827368	17	2.4	16	87	8	53	5	15	0	80	0.88
13827417--13827460	14	3.1	14	86	3	61	0	15	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13827408--13827474	31	2.2	31	86	7	100	0	25	0	74	0.82
13827424--13827463	20	2.0	20	95	0	71	0	22	0	77	0.77
13827414--13827462	14	3.3	14	75	25	55	0	18	0	81	0.69
13827430--13827472	23	1.9	22	85	4	59	0	20	0	79	0.74
13832805--13832858	21	2.7	21	83	13	69	42	0	1	55	1.10
13832809--13832858	20	2.5	20	78	15	59	42	0	2	56	1.11
13842233--13842268	18	1.9	19	88	5	56	33	2	2	61	1.25
13842233--13842270	19	2.0	19	85	10	51	31	5	2	60	1.33
13842265--13842312	18	2.7	18	84	9	55	18	4	6	70	1.25
13850815--13850842	2	14.0	2	100	0	56	50	0	0	50	1.00
13850964--13851011	25	1.9	25	83	8	62	41	2	2	54	1.24
13854637--13854694	21	2.7	22	83	5	82	18	3	31	46	1.66
13854637--13854701	21	3.0	21	84	10	71	16	4	32	46	1.68
13854739--13854786	24	2.0	24	84	8	62	27	0	20	52	1.47
13858108--13858142	10	3.5	10	88	0	52	0	8	2	88	0.61
13860383--13860453	22	3.3	21	75	11	56	66	1	5	26	1.22
13860418--13860462	20	2.2	20	84	7	56	77	0	2	20	0.87
13861366--13861441	23	3.3	23	75	15	68	69	2	1	26	1.09
13861400--13861441	12	3.6	12	81	12	52	73	2	0	23	0.94
13861528--13861565	13	2.9	13	81	11	51	71	0	2	26	1.00
13863128--13863176	25	2.0	26	88	8	75	32	2	14	51	1.54
13867197--13867432	122	1.9	122	94	0	418	31	13	9	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13868459--13868693	127	1.9	124	90	2	380	33	9	24	32	1.88
13874135--13874178	22	2.0	22	90	0	70	43	13	9	34	1.76
13874148--13874196	22	2.3	22	82	10	57	53	12	4	30	1.57
13877896--13877951	25	2.2	25	83	0	76	32	16	32	19	1.94
13878181--13878224	22	2.0	22	90	0	70	43	13	9	34	1.76
13878194--13878242	22	2.3	22	82	10	57	53	12	4	30	1.57
13890534--13890564	2	15.5	2	100	0	62	0	48	0	51	1.00
13895755--13895807	23	2.4	22	78	18	56	20	16	26	35	1.94
13911029--13911070	15	2.8	16	82	7	52	64	4	14	16	1.45
13911026--13911064	16	2.4	16	84	12	53	64	7	17	10	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109