genome.fa.s35.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  101  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20216883--20216923	17	2.2	19	87	12	59	29	0	0	70	0.87
20217450--20217495	16	2.7	18	80	10	60	52	0	0	47	1.00
20221757--20221801	15	3.3	14	87	9	58	77	0	2	20	0.87
20221951--20221984	18	1.9	17	88	5	50	76	0	5	17	0.98
20228498--20228581	18	4.8	17	73	22	75	77	1	13	8	1.05
20228493--20228581	28	3.3	25	84	9	88	75	2	14	7	1.13
20228526--20228591	17	3.8	18	80	13	68	74	0	15	10	1.07
20228498--20228581	26	3.1	27	85	11	111	77	1	13	8	1.05
20228499--20228573	8	8.8	8	74	18	62	77	1	13	8	1.05
20228543--20228591	18	2.8	17	84	9	64	71	0	18	10	1.13
20230213--20230424	43	5.0	42	79	7	182	23	12	21	42	1.86
20230239--20230374	42	3.2	42	85	5	159	22	12	21	44	1.85
20230239--20230424	85	2.2	84	82	7	225	22	12	21	43	1.86
20230303--20230570	44	6.2	43	75	5	184	21	13	19	46	1.83
20231799--20231836	13	3.0	13	84	7	51	26	5	0	68	1.11
20231798--20231847	17	3.0	17	82	2	57	24	6	0	70	1.10
20231849--20231884	15	2.5	15	90	4	56	75	0	2	22	0.94
20234011--20234064	6	8.3	6	78	11	54	22	3	0	74	0.98
20234011--20234066	20	2.8	20	76	15	62	23	3	0	73	0.99
20235760--20235799	3	13.0	3	94	5	71	32	0	0	67	0.91
20235885--20235920	16	2.3	15	90	4	54	63	2	2	30	1.22
20235917--20236101	54	3.4	54	80	0	217	47	8	10	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20239738--20239767	15	2.0	15	100	0	60	40	6	13	40	1.71
20243650--20243713	28	2.3	27	81	10	67	56	3	1	39	1.25
20246048--20246074	1	27.0	1	100	0	54	100	0	0	0	0.00
20249814--20249864	22	2.5	20	87	12	70	49	0	0	50	1.00
20249814--20249865	21	2.6	19	80	16	61	48	0	0	51	1.00
20250527--20250561	2	17.5	2	100	0	70	48	0	0	51	1.00
20250688--20250720	2	16.5	2	100	0	66	48	0	0	51	1.00
20251491--20251520	2	15.0	2	100	0	60	50	0	0	50	1.00
20251546--20251599	23	2.2	25	75	15	60	40	1	12	44	1.54
20251661--20251702	10	3.8	11	81	9	50	45	0	4	50	1.23
20255720--20255768	19	2.6	19	76	0	53	44	10	10	34	1.72
20263900--20263948	22	2.4	19	80	10	53	63	0	2	34	1.06
20265516--20265555	17	2.4	17	86	0	53	37	0	10	52	1.35
20272075--20272117	21	2.0	21	82	8	52	53	4	2	39	1.34
20297520--20297601	34	2.5	33	78	5	94	43	4	10	40	1.61
20297574--20297679	33	3.2	33	79	12	110	33	1	12	52	1.49
20304049--20304075	6	4.5	6	100	0	54	70	0	14	14	1.17
20306970--20307024	23	2.3	23	87	6	74	50	1	9	38	1.45
20306983--20307027	23	2.0	23	95	0	81	48	0	11	40	1.39
20312028--20312079	26	2.0	26	92	0	86	34	11	9	44	1.73
20313869--20313904	6	6.0	6	93	0	54	44	0	2	52	1.15
20317890--20317943	26	2.1	26	96	0	99	31	3	7	57	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20327160--20327208	25	2.0	25	87	0	71	46	4	10	38	1.57
20329361--20329394	12	2.8	12	86	13	52	5	2	64	26	1.30
20330343--20330376	15	2.3	15	94	0	59	5	17	32	44	1.73
20338694--20338733	19	2.0	20	86	13	57	32	5	0	62	1.17
20341968--20342062	48	2.0	48	100	0	190	28	21	12	37	1.90
20342259--20342306	22	2.2	21	81	3	60	66	2	0	31	1.03
20347223--20347268	16	2.8	16	83	6	56	21	6	4	67	1.32
20349551--20349607	12	4.7	12	71	4	51	54	1	0	43	1.10
20349549--20349593	24	1.9	23	86	4	63	51	2	0	46	1.13
20353090--20353114	10	2.5	10	100	0	50	72	0	0	28	0.86
20356788--20356820	2	16.5	2	100	0	66	51	0	0	48	1.00
20357655--20357718	25	2.7	24	80	7	69	34	0	3	62	1.11
20358536--20358595	29	2.1	29	81	9	70	35	0	3	61	1.12
20358571--20358627	24	2.4	24	84	0	69	29	0	1	68	1.00
20362813--20362845	17	1.9	17	93	0	57	39	3	3	54	1.31
20367592--20367656	34	1.9	34	90	0	103	44	13	16	24	1.85
20372050--20372129	38	2.1	38	90	0	124	35	25	8	31	1.86
20373030--20373063	17	2.0	17	94	0	59	64	2	0	32	1.08
20375217--20375274	19	3.3	19	69	18	61	39	3	8	48	1.51
20375218--20375278	20	3.3	20	68	25	62	39	4	8	47	1.55
20375211--20375357	34	4.3	34	81	6	172	42	4	7	46	1.51
20375229--20375384	68	2.3	68	82	6	156	41	3	7	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20381887--20381958	28	2.5	28	76	15	74	51	4	0	44	1.20
20382781--20382831	23	2.3	22	80	12	59	72	0	0	27	0.85
20390599--20390646	23	2.1	23	100	0	96	29	4	20	45	1.70
20392000--20392058	29	2.0	29	83	0	73	47	0	3	49	1.18
20392033--20392109	32	2.4	34	79	16	92	46	3	2	46	1.34
20393081--20393118	17	2.4	16	87	12	53	60	0	2	36	1.11
20395182--20395237	29	1.9	29	85	7	78	42	3	5	48	1.43
20396448--20396490	22	2.0	22	85	0	59	44	9	4	41	1.57
20397296--20397334	14	2.7	15	88	7	55	46	5	0	48	1.24
20397493--20397540	19	2.4	21	82	10	64	31	0	2	66	1.03
20397493--20397540	20	2.4	20	86	6	62	31	0	2	66	1.03
20402450--20402478	2	14.5	2	100	0	58	48	0	0	51	1.00
20402688--20402728	14	2.9	14	88	3	55	48	0	0	51	1.00
20406470--20406506	13	2.8	13	91	4	56	51	0	2	45	1.15
20406617--20406653	14	2.8	13	88	8	56	54	0	0	45	1.00
20407538--20407572	14	2.5	14	90	0	52	25	0	2	71	1.00
20412610--20412666	24	2.3	25	87	6	80	45	1	5	47	1.35
20412699--20412788	39	2.3	39	79	9	103	43	1	0	55	1.07
20426922--20426971	21	2.4	22	76	10	59	40	4	6	50	1.46
20427495--20427527	14	2.4	14	90	5	50	0	0	15	84	0.61
20436102--20436482	60	6.4	58	78	9	340	38	9	4	47	1.56
20436134--20436518	121	3.2	118	78	10	390	38	8	4	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20436534--20436581	22	2.3	20	82	10	60	54	4	2	39	1.32
20437342--20437371	8	3.8	8	100	0	60	33	0	0	66	0.92
20437696--20437946	84	3.0	85	78	5	231	45	15	17	20	1.85
20437844--20438293	170	2.6	168	80	5	537	45	15	18	20	1.85
20437742--20438321	85	6.8	85	76	8	441	45	15	18	21	1.86
20438610--20438652	17	2.5	17	81	11	52	37	13	16	32	1.88
20438721--20438765	17	2.7	16	82	6	54	48	15	4	31	1.65
20438730--20438769	17	2.3	17	87	12	55	47	12	2	37	1.55
20440086--20440123	8	4.9	8	80	6	51	7	2	2	86	0.74
20444108--20444370	60	4.4	60	83	3	300	36	11	4	47	1.59
20444074--20444370	119	2.5	119	81	4	336	37	11	4	46	1.60
20445975--20446018	23	1.9	23	85	0	61	50	4	13	31	1.62
20446228--20446357	64	2.0	65	87	1	190	30	12	20	36	1.89
20449781--20449829	15	3.3	15	76	18	50	42	4	8	44	1.53
20450404--20450437	14	2.7	12	86	13	50	55	0	0	44	0.99
20450696--20450722	2	13.5	2	100	0	54	48	0	0	51	1.00
20458528--20458570	22	2.0	21	86	4	59	51	0	0	48	1.00
20459655--20459700	22	2.0	23	84	12	60	41	0	0	58	0.98
20459667--20459707	20	2.0	21	85	4	57	48	0	0	51	1.00
20461552--20461592	14	2.9	14	88	0	55	75	7	4	12	1.16
20461554--20461599	21	2.2	21	84	0	56	78	8	4	8	1.09
20461920--20461981	23	2.7	23	76	11	65	32	1	0	66	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20461939--20461985	23	2.0	24	91	4	78	29	0	0	70	0.88
20462749--20462812	26	2.3	28	82	17	80	42	0	1	56	1.09
20462814--20462845	10	3.2	10	95	0	55	62	0	0	37	0.95
20462817--20462846	14	2.1	14	93	0	51	60	0	0	40	0.97
20462857--20462901	20	2.2	20	84	4	54	68	6	2	22	1.24
20464032--20464066	14	2.4	15	90	4	54	48	2	0	48	1.16
20471139--20471171	2	16.5	2	100	0	66	51	0	48	0	1.00
20475839--20475895	23	2.3	25	76	14	73	33	0	1	64	1.04
20475829--20475897	33	2.2	33	81	5	79	36	0	1	62	1.04
20475850--20475899	23	2.2	23	92	3	84	32	0	2	66	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109