genome.fa.s35.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  43  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7109897--7109951	27	2.1	26	83	10	67	50	3	1	43	1.30
7109897--7109963	28	2.4	27	80	11	66	49	4	1	44	1.31
7110012--7110045	15	2.3	15	90	5	52	55	5	2	35	1.39
7124159--7124186	2	14.0	2	100	0	56	50	0	0	50	1.00
7124460--7124489	2	15.5	2	93	6	53	53	0	0	46	1.00
7127275--7127317	6	7.0	6	84	5	50	39	0	0	60	0.97
7127275--7127307	13	2.6	13	90	4	50	33	0	0	66	0.92
7129519--7129578	24	2.5	24	77	0	57	28	8	5	58	1.48
7132667--7132727	4	15.0	4	80	13	63	22	1	1	73	1.01
7132666--7132720	27	2.0	27	89	0	83	21	0	1	76	0.88
7132666--7132726	31	2.1	27	85	11	77	21	1	1	75	0.98
7132783--7132836	25	2.2	25	87	6	76	66	0	3	29	1.09
7134354--7134564	116	1.8	117	83	7	286	40	7	8	44	1.62
7134669--7134702	15	2.3	15	95	5	61	70	8	2	17	1.25
7135869--7135904	18	2.0	17	89	10	54	75	0	0	25	0.81
7136288--7136385	51	1.9	51	89	6	155	60	6	7	26	1.47
7141446--7141482	18	2.1	18	100	0	74	29	37	0	32	1.58
7143060--7143086	10	2.7	10	100	0	54	85	0	7	7	0.75
7144440--7144581	45	3.2	45	78	5	139	23	10	17	47	1.79
7144496--7144618	40	2.9	41	81	10	117	25	8	18	47	1.76
7144445--7144618	85	2.0	84	82	9	210	24	9	17	48	1.77
7146090--7146114	10	2.5	10	100	0	50	92	0	0	8	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7147738--7147848	42	2.7	40	83	7	132	55	18	6	19	1.63
7147822--7148066	38	6.4	39	79	6	227	47	20	8	22	1.78
7147841--7148053	113	1.9	113	80	1	248	48	20	8	22	1.77
7147822--7148066	76	3.2	76	83	5	300	47	20	8	22	1.78
7147858--7148090	76	3.1	75	82	7	283	46	20	9	24	1.79
7152689--7152736	18	2.7	18	76	23	64	64	2	16	16	1.39
7152695--7152728	8	4.0	8	85	14	50	73	2	11	11	1.20
7159913--7159952	18	2.3	18	87	12	57	45	2	0	52	1.14
7177283--7177318	6	5.7	6	87	12	54	13	0	0	86	0.58
7177283--7177332	14	3.4	14	83	10	64	16	2	0	82	0.77
7177722--7177787	24	2.8	24	85	0	78	18	34	18	28	1.94
7179301--7179484	58	3.2	58	86	4	246	41	8	12	37	1.73
7179505--7179534	14	2.1	14	93	0	51	0	10	0	90	0.47
7183194--7183237	22	2.0	23	81	4	54	61	6	2	29	1.34
7183246--7183309	31	2.1	31	82	11	78	53	4	0	42	1.22
7185546--7185578	3	11.0	3	100	0	66	66	0	33	0	0.92
7187234--7187263	15	2.0	15	93	0	51	36	6	40	16	1.75
7187709--7187735	2	13.5	2	100	0	54	48	0	0	51	1.00
7188504--7188539	17	2.1	18	89	5	56	50	0	44	5	1.25
7188947--7188981	10	3.5	10	96	0	61	34	40	25	0	1.56
7195305--7195351	21	2.2	22	84	3	60	46	6	8	38	1.60
7197664--7197688	13	1.9	13	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7212748--7212851	34	3.1	34	80	8	97	45	4	7	42	1.54
7223060--7223089	12	2.5	12	94	0	51	13	0	10	76	1.01
7224531--7224858	172	1.9	173	94	0	577	46	7	3	42	1.49
7226023--7226064	12	3.5	12	79	20	52	45	0	2	52	1.13
7228342--7228438	30	3.3	30	80	13	96	52	2	3	42	1.28
7228342--7228431	31	2.9	30	84	11	96	55	2	3	38	1.29
7229693--7229730	19	2.0	19	89	0	58	26	26	31	15	1.96
7232029--7232080	16	3.2	16	89	7	79	25	25	3	46	1.70
7233325--7233369	22	2.1	22	84	8	67	64	0	0	35	0.94
7233327--7233379	22	2.3	23	84	12	65	56	0	0	43	0.99
7233325--7233371	21	2.3	21	86	13	71	61	0	0	38	0.96
7233694--7233734	15	2.7	15	88	0	55	48	0	7	43	1.30
7234749--7234786	10	3.7	10	83	16	51	26	2	0	71	1.00
7234745--7234786	11	4.0	11	84	12	61	26	4	0	69	1.08
7237925--7237965	18	2.3	18	91	8	66	51	0	0	48	1.00
7238059--7238105	25	1.9	25	91	4	78	42	0	2	55	1.12
7238137--7238215	18	4.0	18	73	20	61	58	0	1	40	1.06
7238161--7238219	22	2.8	22	76	14	63	52	0	1	45	1.10
7242007--7242034	6	4.7	6	100	0	56	35	14	35	14	1.86
7263996--7264035	20	2.0	21	90	5	64	52	2	0	45	1.14
7264022--7264050	12	2.5	12	94	5	51	51	3	0	44	1.18
7267627--7267651	8	3.1	8	100	0	50	76	12	0	12	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7268303--7268332	13	2.3	13	94	0	51	66	0	0	33	0.92
7271577--7271608	16	1.9	17	93	6	57	78	0	3	18	0.89
7271728--7271769	17	2.4	17	77	14	50	42	28	21	7	1.79
7272276--7272305	13	2.3	13	94	0	51	66	0	0	33	0.92
7272335--7272378	21	2.1	21	83	8	54	75	2	2	20	1.03
7281816--7281853	20	1.9	20	84	10	51	15	31	2	50	1.58
7285379--7285430	25	2.1	25	92	0	86	51	5	0	42	1.25
7285376--7285437	25	2.3	27	81	16	83	46	4	0	48	1.23
7285633--7285663	12	2.6	12	94	0	53	29	29	9	32	1.89
7289024--7289050	3	9.0	3	100	0	54	66	0	0	33	0.92
7290506--7290540	15	2.3	15	90	9	54	37	2	14	45	1.59
7290529--7290648	34	3.4	34	73	13	114	41	8	15	35	1.77
7295216--7295245	2	15.0	2	92	0	51	50	0	3	46	1.18
7295681--7295734	23	2.3	24	83	6	74	48	1	0	50	1.11
7295868--7295931	23	2.7	24	80	11	78	43	3	0	53	1.16
7295626--7295990	189	1.9	189	96	0	676	40	5	2	51	1.37
7307712--7307781	36	1.9	36	91	0	113	35	0	0	64	0.94
7307718--7307806	36	2.5	36	80	5	92	39	0	0	60	0.97
7307856--7307934	32	2.5	33	77	4	90	65	5	0	29	1.13
7308663--7308757	48	2.0	48	85	4	129	32	26	10	30	1.90
7320614--7320648	17	2.1	17	89	10	54	51	2	0	45	1.16
7320614--7320655	19	2.3	19	84	15	54	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7320710--7320738	12	2.4	12	100	0	58	44	0	0	55	0.99
7322098--7322132	15	2.3	15	86	13	54	42	0	0	57	0.99
7326583--7326641	22	2.6	23	76	10	59	37	3	1	57	1.25
7332080--7332147	16	4.4	15	75	15	59	48	4	1	45	1.31
7333347--7333409	29	2.2	29	85	2	83	46	1	1	50	1.20
7333513--7333584	19	3.6	19	70	23	58	43	2	1	52	1.24
7338828--7338854	6	4.5	6	100	0	54	14	0	0	85	0.61
7338820--7338866	18	2.6	18	83	6	60	14	6	0	78	0.93
7339166--7339215	23	2.1	24	85	3	66	48	4	0	48	1.20
7343043--7343146	15	6.9	15	74	8	86	32	17	20	29	1.95
7343043--7343146	30	3.5	29	79	10	102	32	17	20	29	1.95
7343044--7343165	60	2.0	60	82	6	149	30	18	22	28	1.97
7343067--7343165	30	3.3	29	83	5	117	28	20	23	28	1.99
7349640--7349674	10	3.2	11	92	8	54	91	0	8	0	0.42
7350158--7350227	34	2.1	34	88	0	104	42	4	5	47	1.47
7356825--7356875	23	2.2	23	92	0	84	56	0	1	41	1.10
7356844--7356892	23	2.1	23	81	7	55	59	0	2	38	1.09
7363387--7363434	23	2.2	21	88	7	69	54	0	4	41	1.20
7374748--7374777	2	15.5	2	93	6	53	50	0	0	50	1.00
7376620--7376644	2	12.5	2	100	0	50	48	0	0	52	1.00
7379627--7379682	19	2.9	19	78	5	60	48	1	0	50	1.11
7384261--7384293	4	8.5	4	93	6	59	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7384266--7384300	15	2.3	15	90	0	52	51	0	2	45	1.16
7385635--7385678	19	2.3	19	84	7	54	2	20	2	75	1.03
7393082--7393260	94	1.9	96	89	2	281	41	17	16	25	1.89
7406336--7406379	19	2.2	20	88	4	63	56	0	0	43	0.99
7407792--7407854	33	1.9	33	87	3	92	28	0	6	65	1.17
7407996--7408041	21	2.2	21	92	0	74	45	0	2	52	1.13
7414303--7414337	18	1.9	18	94	0	61	34	2	14	48	1.58
7414853--7414886	16	2.2	15	94	5	59	73	0	0	26	0.83
7418319--7418453	60	2.3	61	81	3	168	31	9	20	38	1.85
7419678--7419711	2	17.0	2	90	0	50	0	52	2	44	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109