genome.fa.s35.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  60  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11931170--11931283	6	17.7	6	76	16	88	19	1	1	77	0.95
11931173--11931282	41	2.7	41	83	8	111	20	1	1	76	0.97
11931340--11931417	22	3.6	21	75	16	61	24	3	6	65	1.33
11932281--11932411	12	10.5	12	71	13	63	19	3	3	74	1.11
11932337--11932400	19	3.3	20	73	18	64	18	3	0	78	0.89
11932337--11932416	11	7.2	11	79	16	76	18	3	0	77	0.92
11932350--11932416	6	10.7	6	75	15	64	16	4	0	79	0.90
11932350--11932435	28	3.0	28	80	17	95	16	6	1	75	1.07
11932358--11932439	21	3.6	22	78	20	80	17	6	1	75	1.06
11932450--11932845	117	3.4	117	86	5	546	44	7	13	34	1.71
11932450--11932845	58	6.7	59	84	6	473	44	7	13	34	1.71
11943872--11943929	7	8.0	7	83	14	64	12	0	1	86	0.65
11943873--11943939	26	2.6	25	83	6	80	11	0	2	85	0.72
11943873--11943930	1	58.0	1	78	0	53	10	0	1	87	0.60
11949443--11949486	23	1.9	23	90	9	72	45	4	22	27	1.72
11949724--11949778	20	2.8	20	94	0	92	30	18	14	36	1.91
11949841--11949880	21	1.9	21	94	0	71	30	10	17	42	1.82
11949846--11949896	21	2.4	22	83	9	70	35	9	15	39	1.81
11950294--11950851	42	13.4	41	83	5	554	27	12	13	47	1.78
11951128--11951157	12	2.6	11	90	10	51	0	10	0	90	0.47
11951829--11951887	8	6.9	8	83	11	73	11	1	3	83	0.85
11951834--11951895	27	2.3	27	88	8	90	12	1	4	80	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11953021--11953126	52	2.0	52	98	0	203	35	7	16	40	1.76
11953373--11953487	47	2.4	48	94	1	196	32	11	10	46	1.74
11953989--11954033	19	2.4	19	80	0	54	35	0	8	55	1.31
11954130--11954172	17	2.6	17	85	3	52	44	2	2	51	1.27
11954406--11954580	17	11.1	17	73	16	105	45	5	1	48	1.35
11954509--11954565	14	3.9	14	79	11	62	49	1	1	47	1.22
11954575--11954619	18	2.5	19	82	10	58	60	2	0	37	1.09
11961307--11961351	13	3.5	13	78	6	56	53	0	0	46	1.00
11966190--11966246	26	2.2	25	87	3	78	45	3	3	47	1.37
11966211--11966284	16	4.6	16	71	19	55	47	2	0	50	1.15
11966322--11966388	28	2.5	28	81	13	88	41	1	0	56	1.08
11967844--11967881	18	2.2	18	90	4	60	71	0	0	28	0.87
11968383--11968429	16	2.9	16	84	12	60	19	2	4	74	1.09
11969609--11969656	18	2.7	17	87	6	60	72	2	2	22	1.05
11969985--11970304	43	7.4	43	74	10	192	34	14	11	40	1.82
11969968--11970267	130	2.3	129	77	10	299	33	15	12	39	1.84
11969968--11970208	44	5.5	43	77	8	220	32	15	12	40	1.84
11969937--11970298	44	8.3	43	72	13	210	34	13	11	40	1.81
11970594--11970652	11	5.3	11	76	15	50	16	10	0	72	1.10
11970599--11970652	17	3.2	16	78	17	56	18	7	0	74	1.05
11970599--11970672	6	12.7	6	77	17	50	16	6	1	75	1.08
11971642--11971686	22	2.0	22	87	8	65	17	2	11	68	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11972150--11972205	20	2.8	20	82	15	71	71	0	3	25	1.02
11977291--11977338	17	3.1	15	80	16	53	22	2	0	75	0.91
11977293--11977339	19	2.6	18	86	6	67	25	2	0	72	0.96
11977307--11977339	6	5.7	6	85	7	50	30	0	0	69	0.88
11977528--11977569	20	2.0	21	86	13	61	57	2	4	35	1.33
11977876--11978041	61	2.7	61	94	0	278	42	12	9	35	1.76
11978276--11978423	64	2.4	63	82	6	178	42	8	14	34	1.76
11978314--11978458	64	2.3	65	82	2	177	43	9	13	33	1.76
11978336--11978473	64	2.2	64	81	5	154	42	10	13	34	1.79
11983754--11983781	3	9.3	3	100	0	56	67	0	0	32	0.91
11984074--11984116	18	2.3	19	88	4	61	67	2	2	27	1.15
11990170--11990211	19	2.2	19	86	0	57	59	2	2	35	1.23
12012914--12012948	2	17.5	2	100	0	70	51	0	0	48	1.00
12013142--12013183	7	5.7	7	86	8	57	78	2	19	0	0.86
12013151--12013188	13	2.9	13	88	11	60	81	0	18	0	0.69
12033082--12033120	21	1.9	21	85	15	55	41	5	0	53	1.23
12033081--12033133	17	2.8	18	81	18	63	41	5	0	52	1.25
12033712--12034044	166	2.0	166	95	0	594	32	22	20	25	1.98
12037799--12037840	21	2.0	21	85	0	57	69	0	4	26	1.08
12037806--12037848	21	2.0	21	90	0	68	69	0	2	27	1.00
12038121--12038198	38	2.0	40	82	5	97	46	3	1	48	1.28
12042038--12042101	24	2.8	24	72	13	62	56	15	1	26	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12042038--12042111	23	3.2	23	70	9	60	58	13	1	27	1.44
12044238--12044280	22	2.0	22	100	0	86	46	4	9	39	1.57
12047955--12047988	17	2.0	17	88	0	50	64	0	2	32	1.08
12048963--12048992	15	2.0	15	93	0	51	63	6	6	23	1.43
12052838--12052922	33	2.7	33	75	20	83	47	1	2	49	1.22
12056235--12056275	12	3.4	12	86	6	57	60	0	0	39	0.96
12056426--12056452	10	2.7	10	100	0	54	44	7	0	48	1.31
12056477--12056520	20	2.2	20	84	12	54	34	6	0	59	1.24
12056887--12056916	15	2.0	15	93	0	51	56	0	0	43	0.99
12057592--12057630	13	3.0	13	88	0	60	87	12	0	0	0.55
12062894--12062958	24	2.7	24	78	7	69	61	0	1	36	1.05
12062895--12062958	25	2.5	24	72	7	65	62	0	1	35	1.05
12063833--12063865	3	11.0	3	87	12	50	33	0	0	66	0.92
12071997--12072042	14	3.3	13	80	14	56	43	2	0	54	1.12
12072087--12072149	33	1.9	32	84	9	83	61	1	3	33	1.21
12072139--12072176	14	2.7	14	80	11	51	55	0	2	42	1.14
12072759--12072805	16	2.8	16	76	20	51	31	0	4	63	1.13
12078329--12078359	16	1.9	16	100	0	62	19	41	0	38	1.51
12078794--12078965	73	2.4	73	97	0	326	47	18	8	26	1.76
12084139--12084180	17	2.4	17	88	4	57	9	4	0	85	0.72
12096823--12096877	29	2.0	27	89	7	83	7	7	3	81	0.96
12096856--12096886	13	2.4	13	88	0	53	6	9	0	83	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12115420--12115457	15	2.5	15	83	8	51	50	0	2	47	1.15
12119739--12119789	22	2.2	24	80	13	63	31	3	0	64	1.11
12119752--12119792	12	3.5	12	80	6	57	24	2	0	73	0.96
12119749--12119792	23	2.0	22	95	4	79	27	2	0	70	0.99
12119756--12119793	11	3.4	11	80	20	51	26	2	0	71	1.00
12119751--12119800	23	2.2	23	89	3	75	32	2	0	66	1.03
12120480--12120523	19	2.4	18	78	17	54	54	0	0	45	0.99
12120502--12120591	17	5.5	17	72	19	57	57	0	3	38	1.15
12120502--12120572	11	6.0	11	76	14	61	59	0	4	36	1.17
12120568--12120644	23	3.2	24	74	7	77	51	1	0	46	1.09
12120543--12120654	59	1.9	59	85	3	156	56	0	0	41	1.11
12120543--12120666	57	2.2	56	81	5	133	55	0	0	42	1.11
12126553--12126620	22	3.0	23	80	8	77	58	1	1	38	1.16
12126544--12126618	13	6.4	12	74	14	68	56	2	1	40	1.22
12129414--12129439	13	2.0	13	100	0	52	46	30	0	23	1.53
12132509--12132796	120	2.4	121	80	2	301	37	9	8	45	1.66
12132476--12132796	61	5.4	60	77	4	310	36	10	9	44	1.71
12132521--12132829	61	5.1	59	75	9	243	36	7	7	47	1.60
12132839--12132903	17	3.8	17	72	24	64	73	7	3	15	1.18
12134053--12134107	9	6.1	9	80	14	60	40	0	0	60	0.97
12136603--12136646	10	4.3	10	86	11	54	72	0	2	25	0.96
12136603--12136646	21	2.1	21	84	12	56	72	0	2	25	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12138135--12138163	7	4.1	7	100	0	58	13	0	27	58	1.36
12141020--12141080	15	3.6	17	80	10	72	65	0	14	19	1.27
12141021--12141080	17	3.6	16	84	13	77	66	0	15	18	1.25
12141053--12141096	18	2.3	18	84	7	52	70	0	18	11	1.16
12141774--12142231	152	2.9	158	91	3	748	37	17	15	29	1.90
12142277--12142306	1	30.0	1	100	0	60	100	0	0	0	0.00
12142260--12142300	12	3.0	14	86	10	50	85	4	0	9	0.73
12142631--12142677	19	2.5	19	82	0	58	21	19	29	29	1.97
12143300--12143325	3	8.7	3	100	0	52	69	0	0	30	0.89
12143418--12143451	14	2.5	14	90	4	52	88	0	11	0	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109