genome.fa.s35.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  72  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14339066--14339110	18	2.5	18	82	7	56	48	2	4	44	1.35
14339141--14339190	15	3.2	15	88	11	66	22	4	0	74	0.99
14339475--14339512	21	1.9	20	84	10	51	39	5	7	47	1.55
14339449--14339602	30	5.2	29	71	12	98	37	2	5	54	1.37
14339502--14339583	10	8.5	10	72	10	64	34	1	7	57	1.34
14339451--14339589	19	7.1	19	72	11	93	40	2	5	51	1.38
14339678--14339730	10	5.0	10	75	20	54	47	0	3	49	1.19
14339819--14340039	30	7.2	30	68	17	91	37	2	5	54	1.37
14339831--14339918	29	3.0	30	81	6	99	42	1	4	52	1.29
14339819--14340044	10	23.2	10	69	13	80	37	2	6	54	1.38
14339982--14340044	19	3.2	19	82	6	81	38	1	4	55	1.31
14340714--14340747	17	1.9	18	88	5	52	55	0	2	41	1.15
14340729--14340782	19	2.8	19	78	15	58	59	0	3	37	1.15
14340741--14340781	17	2.3	19	87	8	59	60	0	2	36	1.10
14341005--14341056	21	2.5	21	79	11	63	78	3	7	9	1.06
14341220--14341253	17	1.9	18	94	5	61	58	8	0	32	1.29
14345268--14345314	14	3.2	14	81	6	58	51	19	6	23	1.70
14345362--14345403	13	3.1	14	77	19	52	40	14	9	35	1.78
14345387--14345432	20	2.3	20	85	7	58	45	10	4	39	1.59
14345615--14345667	22	2.5	22	74	17	58	52	9	5	32	1.57
14345620--14345750	55	2.4	55	86	0	172	51	9	6	32	1.62
14345675--14345821	43	3.4	42	74	10	145	53	8	6	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14345678--14345844	31	5.9	29	68	21	97	55	8	4	31	1.51
14345650--14345844	86	2.2	86	88	1	282	54	9	5	30	1.55
14345622--14345899	141	2.0	141	87	1	405	54	8	5	31	1.54
14345738--14345890	55	2.8	55	88	2	229	56	7	3	32	1.44
14345894--14345928	12	2.9	12	91	0	52	62	14	5	17	1.49
14345858--14345943	44	2.0	44	85	0	118	55	12	6	24	1.61
14345918--14346040	24	5.2	23	67	17	65	55	9	4	30	1.51
14345907--14346045	47	3.1	45	77	11	131	55	10	3	30	1.50
14348475--14349471	493	2.0	494	91	2	1572	40	9	7	42	1.65
14352736--14352762	7	3.9	7	100	0	54	74	0	0	25	0.83
14356081--14356110	15	1.9	16	93	6	53	53	0	20	26	1.46
14358664--14358935	131	2.0	135	86	7	381	43	13	14	28	1.83
14360783--14360810	2	14.0	2	100	0	56	50	0	0	50	1.00
14362630--14362678	17	2.9	17	76	11	55	40	2	0	57	1.10
14362752--14362782	15	2.1	15	94	5	55	25	6	0	67	1.14
14373059--14373121	11	5.8	11	72	23	53	3	11	6	79	1.03
14373059--14373120	5	12.6	5	81	13	58	3	11	4	80	0.98
14373054--14373120	33	2.1	32	86	8	91	4	10	4	80	0.99
14380093--14380124	16	2.1	15	94	5	55	34	6	18	40	1.76
14387545--14387596	9	5.4	9	78	17	52	82	1	11	3	0.88
14392143--14392176	17	2.0	17	88	0	50	32	29	5	32	1.81
14401352--14401402	23	2.4	22	81	12	54	62	5	3	27	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14405929--14405981	10	5.2	10	81	4	70	20	9	20	49	1.77
14406004--14406043	19	2.2	19	86	4	55	25	10	12	52	1.70
14411316--14411351	18	2.0	18	88	0	54	61	13	8	16	1.56
14412334--14412676	145	2.4	144	81	4	406	42	9	10	37	1.73
14412347--14412742	145	2.7	144	79	4	397	41	10	11	36	1.75
14414077--14414278	85	2.4	86	90	0	307	30	13	20	35	1.91
14414051--14414246	41	4.8	41	72	15	147	32	13	20	33	1.91
14414214--14414542	89	3.7	87	78	8	331	32	10	20	36	1.87
14414393--14414769	130	2.9	130	79	9	383	33	9	20	36	1.86
14414646--14414685	21	1.9	21	84	0	53	37	7	25	30	1.83
14414612--14414717	48	2.2	48	85	5	144	33	6	22	37	1.80
14414533--14414780	133	1.8	136	82	5	324	31	10	19	37	1.86
14415689--14415735	24	2.0	24	82	0	58	0	17	2	80	0.80
14415695--14415719	5	5.0	5	100	0	50	0	20	0	80	0.72
14421446--14421503	27	2.2	26	84	3	71	72	1	13	12	1.20
14424040--14424083	21	2.1	21	91	0	70	61	13	6	18	1.54
14425088--14425484	146	2.7	145	84	5	466	40	10	14	34	1.80
14432830--14432873	18	2.4	18	78	17	54	50	27	2	20	1.60
14433672--14433723	17	2.9	18	82	8	61	34	17	3	44	1.67
14433641--14433828	92	2.0	92	91	0	304	42	14	7	35	1.74
14439205--14439276	20	3.7	19	75	17	69	50	9	9	30	1.68
14439508--14441105	532	3.0	532	99	0	3160	31	11	16	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14441814--14441856	5	8.4	5	89	5	68	79	0	2	18	0.85
14441807--14441857	26	1.9	27	96	4	95	76	1	3	17	1.03
14442706--14442864	24	6.1	26	75	19	136	63	1	4	30	1.24
14442718--14442831	50	2.4	48	84	11	144	66	1	3	28	1.18
14442730--14442922	50	3.7	50	72	21	148	65	1	4	29	1.17
14442741--14442927	8	26.4	7	68	20	56	66	0	4	28	1.15
14442736--14442920	53	3.4	54	77	12	168	65	0	4	29	1.16
14442845--14442886	21	2.0	22	95	4	77	66	0	9	23	1.21
14444049--14444093	23	2.0	23	86	0	63	22	6	8	62	1.48
14447949--14447992	24	1.9	24	86	9	65	45	4	2	47	1.35
14448062--14448090	13	2.1	14	93	6	51	79	0	6	13	0.93
14453079--14453107	13	2.3	13	94	5	51	72	0	0	27	0.85
14455604--14455643	21	2.0	21	85	9	57	57	10	5	27	1.52
14455648--14455694	18	2.3	22	72	27	66	46	4	19	29	1.68
14455654--14455698	18	2.5	18	100	0	90	42	6	20	31	1.77
14455736--14455778	19	2.3	19	87	0	59	20	4	32	41	1.73
14455755--14456009	19	13.2	19	75	10	142	19	2	36	42	1.64
14455824--14455985	39	4.2	39	72	10	134	18	2	37	41	1.64
14455775--14456005	58	4.0	57	73	9	191	19	2	36	41	1.64
14466072--14466742	96	6.8	95	74	13	428	42	12	13	31	1.82
14466080--14466746	49	13.5	48	74	10	445	42	13	13	31	1.82
14469432--14469504	36	2.0	36	94	0	128	34	15	19	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14472133--14472160	3	9.3	3	100	0	56	67	0	0	32	0.91
14473434--14473484	26	1.9	27	88	4	77	25	1	5	66	1.24
14481100--14481273	85	2.0	85	98	0	339	40	10	22	26	1.87
14482101--14482130	11	2.7	11	100	0	60	90	0	10	0	0.47
14482099--14482143	17	2.5	17	85	7	54	84	0	13	2	0.72
14482510--14482599	36	2.5	36	76	5	101	20	8	11	60	1.57
14482783--14482873	36	2.6	36	76	15	98	21	18	6	52	1.68
14482895--14482986	35	2.6	35	81	3	96	20	23	9	45	1.81
14483046--14483145	34	2.9	34	77	5	103	19	17	12	52	1.75
14483244--14483365	36	3.4	35	79	10	122	18	14	13	53	1.73
14483046--14483365	35	9.1	35	69	15	135	18	17	12	51	1.76
14483451--14483489	20	2.0	20	90	10	62	84	7	0	7	0.77
14483807--14483835	8	3.6	8	100	0	58	79	0	0	20	0.74
14483884--14483922	19	2.1	19	85	9	53	58	0	2	38	1.12
14483884--14483922	9	4.1	9	86	6	51	58	0	2	38	1.12
14483807--14483934	10	13.0	10	69	19	58	64	2	1	31	1.15
14495663--14495691	14	2.1	14	93	6	51	62	0	3	34	1.12
14514260--14514330	29	2.4	29	85	2	97	52	1	1	45	1.18
14514260--14514343	29	3.0	28	79	10	82	51	1	1	46	1.16
14514406--14514448	15	2.9	15	76	13	52	51	0	0	48	1.00
14514445--14514479	18	2.0	18	88	5	54	42	0	0	57	0.99
14514458--14514550	47	2.0	47	100	0	186	48	2	0	49	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14516206--14516296	33	2.8	34	81	6	107	27	13	20	38	1.90
14516238--14516306	32	2.1	33	81	7	79	31	14	18	34	1.91
14518924--14518997	38	1.9	38	88	0	112	29	24	6	39	1.81
14520215--14520297	27	3.2	26	73	11	80	60	12	10	16	1.59
14523424--14523448	12	2.1	12	100	0	50	60	0	0	40	0.97
14524736--14524765	15	1.9	16	93	6	53	56	0	26	16	1.40
14534534--14534572	8	4.8	8	85	14	53	84	0	2	12	0.72
14542650--14542675	2	13.0	2	100	0	52	50	0	0	50	1.00
14545128--14545156	8	3.6	8	100	0	58	89	0	0	10	0.48
14548351--14548388	15	2.5	15	83	8	51	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109