genome.fa.s35.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  106  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21695376--21695446	16	4.2	16	70	8	52	39	2	1	56	1.23
21698806--21698869	24	2.6	24	78	9	76	34	4	0	60	1.17
21698813--21698866	13	4.3	13	79	13	51	33	5	0	61	1.19
21699410--21699435	3	8.7	3	100	0	52	0	34	0	65	0.93
21702115--21702172	22	2.6	23	78	10	66	44	1	8	44	1.44
21705540--21705571	7	4.6	7	100	0	64	59	0	0	40	0.97
21705632--21705665	14	2.3	15	95	5	61	47	0	0	52	1.00
21705717--21705754	19	2.0	19	89	0	58	36	0	0	63	0.95
21705728--21705796	17	4.4	17	71	26	53	39	0	0	60	0.97
21705739--21705787	22	2.3	21	86	10	64	36	0	0	63	0.95
21708149--21708181	9	3.7	9	88	11	50	66	0	0	33	0.92
21708147--21708176	10	3.1	10	90	9	53	63	0	0	36	0.95
21717754--21717778	4	6.2	4	100	0	50	24	0	0	76	0.80
21718938--21719009	33	2.3	31	83	7	92	34	2	5	56	1.37
21719114--21719159	23	2.0	23	84	16	60	63	2	0	34	1.07
21723882--21723954	36	2.0	36	94	5	130	26	24	15	34	1.94
21726308--21726380	36	2.0	36	91	0	119	31	5	19	43	1.73
21727816--21727878	27	2.4	26	83	2	72	36	7	0	55	1.29
21728692--21728730	19	2.0	20	85	14	55	35	10	2	51	1.50
21739039--21739079	13	3.2	13	86	10	57	43	0	4	51	1.23
21739039--21739255	113	2.0	108	81	6	256	43	1	4	50	1.32
21742213--21742892	343	2.0	338	92	2	1128	41	16	16	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21743369--21743557	102	1.8	102	87	3	281	38	15	16	29	1.89
21767098--21767148	3	17.0	3	100	0	102	0	33	0	66	0.92
21776450--21776490	21	2.0	21	85	0	55	56	2	0	41	1.13
21782016--21782050	9	3.9	9	96	0	61	37	8	0	54	1.31
21783652--21783735	3	28.0	3	80	9	91	34	2	3	59	1.28
21783981--21784120	66	2.1	68	93	2	239	51	14	17	16	1.77
21798801--21798849	23	2.1	23	92	0	80	22	2	46	28	1.63
21803054--21803095	19	2.2	19	86	0	57	21	4	9	64	1.42
21808496--21808540	22	2.0	22	95	0	81	20	13	17	48	1.80
21808636--21808677	21	2.0	21	90	0	66	50	2	21	26	1.61
21811836--21811867	2	16.0	2	93	0	55	53	0	46	0	1.00
21815145--21815199	28	2.0	28	85	0	74	41	9	0	49	1.34
21815424--21815454	11	2.8	11	90	0	53	67	0	0	32	0.91
21816311--21816373	23	2.7	23	88	9	85	65	0	3	31	1.09
21818670--21818729	27	2.2	28	85	8	79	35	5	1	58	1.30
21822479--21822514	17	2.1	17	90	10	56	72	8	11	8	1.29
21822695--21822734	20	2.0	20	85	5	53	2	20	0	77	0.88
21827287--21827325	20	2.1	17	86	13	51	35	0	0	64	0.94
21827339--21827387	12	4.3	12	73	23	52	51	2	0	46	1.12
21827892--21827920	2	14.5	2	100	0	58	48	0	0	51	1.00
21845630--21845663	2	17.0	2	100	0	68	0	50	0	50	1.00
21846234--21846277	13	3.3	13	81	15	54	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21846271--21846317	22	2.2	20	88	7	67	53	0	0	46	1.00
21847228--21847302	30	2.5	29	80	6	78	44	6	1	48	1.37
21848410--21848490	33	2.5	32	76	7	83	54	1	2	41	1.21
21853783--21853809	1	27.0	1	100	0	54	0	0	0	100	0.00
21858842--21859170	165	2.0	165	92	0	550	22	30	16	31	1.96
21860157--21860199	13	3.2	13	83	6	59	44	0	0	55	0.99
21860353--21860421	19	3.5	19	75	11	59	55	2	1	40	1.24
21865072--21865176	17	5.7	18	69	23	58	43	0	0	54	1.13
21865099--21865160	21	3.0	21	78	19	67	43	1	0	54	1.09
21867501--21867543	7	6.0	7	84	12	52	74	2	0	23	0.93
21867501--21867543	15	2.9	15	83	13	54	74	2	0	23	0.93
21877327--21877368	21	2.0	21	90	0	66	33	4	38	23	1.76
21879391--21879419	3	9.7	3	100	0	58	68	0	31	0	0.89
21883876--21883928	26	2.1	26	82	3	63	33	1	7	56	1.38
21885673--21885704	15	2.1	15	100	0	64	18	0	18	62	1.33
21885924--21885955	14	2.3	14	100	0	64	21	6	31	40	1.78
21886046--21886326	141	2.0	140	92	0	472	30	12	27	29	1.92
21888075--21888124	24	2.1	24	100	0	100	44	20	16	20	1.87
21899196--21899246	25	2.0	26	85	7	70	52	0	0	47	1.00
21899307--21899369	32	2.0	32	83	0	81	52	4	0	42	1.22
21911635--21911676	11	3.6	11	81	12	57	69	0	2	28	1.01
21913853--21913888	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21914302--21914333	2	16.0	2	100	0	64	0	50	0	50	1.00
21917747--21917801	20	2.5	23	77	19	64	52	0	0	47	1.00
21917748--21917801	22	2.5	21	77	19	58	53	0	0	46	1.00
21917806--21917879	33	2.5	27	75	21	76	51	6	6	35	1.55
21918533--21918570	18	2.2	18	86	9	53	5	2	7	84	0.86
21927683--21927910	122	1.9	122	85	5	318	40	14	15	29	1.86
21928949--21929021	30	2.6	27	77	14	69	39	4	0	56	1.19
21929698--21929781	41	2.0	41	97	0	159	21	30	11	35	1.90
21933392--21933430	2	19.5	2	100	0	78	51	0	0	48	1.00
21938163--21938192	15	2.0	15	100	0	60	13	26	13	46	1.80
21941208--21941270	30	2.1	30	100	0	126	31	7	12	47	1.70
21941752--21941780	2	14.5	2	100	0	58	51	48	0	0	1.00
21945478--21945507	15	2.0	15	100	0	60	13	26	13	46	1.80
21950462--21950523	33	1.9	31	83	9	79	66	0	4	29	1.12
21953968--21954001	15	2.3	15	90	10	52	76	0	2	20	0.92
21955069--21955105	2	18.5	2	94	0	65	54	0	45	0	1.00
21956965--21957024	18	3.5	18	75	13	63	51	3	0	45	1.17
21956968--21957031	33	2.0	32	90	3	101	53	3	0	43	1.16
21968871--21968930	31	2.0	29	87	12	86	51	8	8	31	1.62
21969066--21969096	3	10.3	3	100	0	62	32	0	0	67	0.91
21972144--21972169	1	26.0	1	100	0	52	100	0	0	0	0.00
21973149--21973187	2	20.0	2	94	5	71	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21984996--21985027	3	10.7	3	100	0	64	34	0	0	65	0.93
21998563--21998602	14	2.8	14	80	3	53	52	0	0	47	1.00
22000291--22000326	2	18.0	2	88	0	54	44	0	0	55	0.99
22002005--22002033	2	14.5	2	100	0	58	51	0	0	48	1.00
22012909--22012947	11	3.4	11	80	13	51	71	0	0	28	0.86
22014751--22014889	72	1.9	72	98	0	269	40	4	2	52	1.36
22015623--22015662	21	1.9	21	94	0	71	37	0	7	55	1.29
22018902--22018970	36	1.9	36	85	5	95	49	1	11	37	1.48
22028032--22028116	24	3.5	23	76	12	73	54	5	7	32	1.52
22027984--22028310	174	1.9	173	89	1	503	49	7	7	35	1.60
22032019--22032062	22	2.0	22	86	8	63	63	9	0	27	1.24
22033917--22033941	12	2.1	12	100	0	50	60	0	0	40	0.97
22034070--22034111	21	2.0	21	86	4	59	28	7	0	64	1.20
22045342--22045367	2	13.0	2	100	0	52	50	0	0	50	1.00
22050420--22050447	2	14.0	2	100	0	56	50	0	0	50	1.00
22053934--22054024	47	1.9	48	88	2	139	45	15	4	35	1.66
22058777--22058826	24	2.1	23	82	10	57	40	4	2	54	1.31
22058953--22058987	5	7.4	5	87	12	56	37	0	0	62	0.95
22058953--22058979	13	2.1	13	100	0	54	37	0	0	62	0.95
22060609--22060669	31	2.0	31	96	0	113	44	9	8	37	1.68
22066415--22066454	20	2.1	19	86	9	55	52	15	5	27	1.63
22066424--22066462	20	2.0	20	89	0	60	53	15	5	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22069194--22069304	58	1.9	58	96	0	204	45	17	7	29	1.75
22078190--22078280	43	2.1	43	91	0	146	59	7	17	15	1.59
22081846--22081876	8	4.0	8	95	4	55	90	9	0	0	0.46
22081841--22081874	17	1.9	18	88	5	52	88	8	0	2	0.62
22084586--22084618	15	2.1	17	88	11	52	39	0	3	57	1.14
22095503--22095545	20	2.2	20	100	0	86	27	23	18	30	1.98
22105095--22105142	23	2.1	23	100	0	96	31	8	10	50	1.66
22125178--22125267	45	2.0	45	97	0	171	61	11	10	17	1.56
22125357--22125418	32	1.9	32	96	0	115	38	24	9	27	1.86
22132811--22132856	3	15.3	3	100	0	92	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109