genome.fa.s35.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  102  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20475956--20476033	23	3.4	23	71	16	72	57	3	1	37	1.25
20476987--20477024	13	2.7	14	84	8	51	42	2	5	50	1.39
20483787--20483845	31	1.9	31	96	0	109	25	16	10	47	1.78
20483934--20483959	2	13.0	2	100	0	52	50	0	0	50	1.00
20484410--20484434	2	12.5	2	100	0	50	52	0	0	48	1.00
20504461--20504516	28	2.0	29	85	3	78	33	0	0	66	0.92
20504459--20504537	22	3.5	22	81	6	79	32	0	0	67	0.91
20504488--20504542	24	2.3	24	87	0	74	30	1	0	67	1.01
20504499--20504553	24	2.3	24	77	0	56	34	3	0	61	1.13
20521476--20521585	54	2.0	55	94	1	195	33	13	12	40	1.83
20533500--20533561	17	3.4	17	68	23	54	38	8	22	30	1.83
20536420--20536448	2	14.5	2	100	0	58	48	0	0	51	1.00
20537727--20537825	14	6.5	15	71	15	51	30	1	1	67	1.04
20537743--20537791	21	2.3	20	80	10	53	32	2	0	65	1.04
20537762--20537817	25	2.2	25	87	6	78	32	1	1	64	1.14
20537809--20537894	27	3.2	26	80	6	82	39	2	2	55	1.25
20538628--20538706	31	2.6	31	78	6	90	54	2	0	43	1.14
20538676--20538717	19	2.2	20	83	12	52	61	4	0	33	1.17
20546266--20546305	18	2.2	18	86	0	53	65	2	0	32	1.06
20559523--20559577	23	2.3	24	81	12	69	50	3	0	45	1.19
20562770--20562859	45	2.0	45	100	0	180	37	13	26	22	1.91
20563055--20563089	5	7.0	5	100	0	70	40	20	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20565721--20565751	5	6.2	5	100	0	62	58	19	0	22	1.40
20589972--20590041	36	1.9	37	82	5	90	42	0	1	55	1.08
20590196--20590234	20	2.0	20	94	0	69	23	0	10	66	1.22
20590247--20590331	23	3.6	23	76	9	80	38	1	4	55	1.29
20590372--20590403	15	2.1	15	94	0	55	62	0	0	37	0.95
20594707--20594760	21	2.7	20	83	11	65	29	0	3	66	1.09
20595003--20595086	30	2.7	30	76	12	73	46	1	3	48	1.27
20595555--20595606	19	2.6	21	77	20	65	34	1	0	63	1.06
20599295--20599336	20	2.1	20	82	8	50	38	11	9	40	1.75
20600304--20600365	20	3.0	21	79	15	58	51	0	0	48	1.00
20600542--20600577	17	2.1	19	85	15	51	66	2	0	30	1.06
20601365--20601420	7	8.1	7	77	18	55	26	1	1	69	1.08
20601366--20601420	14	4.1	13	85	4	65	27	1	1	69	1.09
20601366--20601420	27	2.0	27	82	6	67	27	1	1	69	1.09
20606062--20606089	10	2.8	10	100	0	56	89	0	10	0	0.49
20612111--20612136	2	13.0	2	100	0	52	50	0	0	50	1.00
20612136--20612161	2	13.0	2	100	0	52	50	0	50	0	1.00
20625575--20625791	110	2.0	110	87	1	319	41	21	16	21	1.90
20630649--20630689	20	2.0	20	100	0	82	41	4	0	53	1.22
20630655--20630701	11	4.5	11	76	10	53	38	4	0	57	1.18
20646499--20646547	8	6.5	8	83	6	59	61	0	0	38	0.96
20668127--20668271	76	1.9	76	95	0	263	42	12	7	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20673331--20673432	42	2.5	40	81	10	107	48	0	2	49	1.16
20673667--20673712	14	3.3	14	79	8	58	60	0	0	39	0.97
20679924--20679973	25	2.0	25	88	0	73	38	16	16	30	1.90
20681872--20681903	16	2.0	16	100	0	64	18	0	37	43	1.51
20682539--20682588	19	2.5	20	80	6	57	56	8	8	28	1.57
20691068--20691101	6	5.7	6	85	0	50	11	20	2	64	1.39
20705657--20705703	19	2.3	21	75	14	53	42	2	0	55	1.12
20709503--20709544	20	2.1	20	86	0	57	38	14	4	42	1.66
20710584--20710632	22	2.2	22	89	7	73	16	22	36	24	1.94
20714623--20714928	156	2.0	156	92	1	508	28	22	16	32	1.96
20723154--20723181	11	2.5	11	100	0	56	71	0	0	28	0.86
20724292--20724325	6	5.7	6	89	0	50	52	2	11	32	1.53
20731437--20731471	19	1.9	19	88	11	56	51	2	0	45	1.16
20731454--20731498	22	2.0	22	86	8	63	53	0	0	46	1.00
20742473--20742513	18	2.2	19	91	4	66	29	0	0	70	0.87
20743467--20743509	21	2.1	20	86	4	59	34	0	0	65	0.93
20743513--20743539	10	2.7	10	100	0	54	81	0	0	18	0.69
20743780--20743829	3	16.7	3	100	0	100	32	0	0	68	0.90
20745357--20745400	20	2.2	20	92	4	72	47	2	0	50	1.13
20751177--20751213	19	2.0	19	89	5	58	43	0	0	56	0.99
20751173--20751215	19	2.4	18	82	14	54	41	0	0	58	0.98
20752352--20752393	16	2.6	17	81	11	52	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20752384--20752428	20	2.2	20	88	7	65	48	2	0	48	1.13
20757461--20757544	35	2.4	33	79	11	87	53	2	1	42	1.21
20758732--20758798	34	2.0	34	91	2	109	25	31	20	22	1.98
20759019--20759048	2	15.5	2	93	6	53	53	0	0	46	1.00
20759017--20759049	15	2.2	15	100	0	66	54	0	0	45	0.99
20759021--20759046	13	2.0	13	100	0	52	53	0	0	46	1.00
20761086--20761137	23	2.3	22	83	6	68	59	3	0	36	1.16
20761158--20761202	22	2.1	21	84	12	56	42	4	0	53	1.21
20761975--20762010	15	2.4	15	90	0	54	52	0	0	47	1.00
20761972--20762118	35	4.3	35	68	14	92	49	1	2	46	1.21
20761972--20762026	20	2.8	19	78	8	58	45	0	0	54	0.99
20762307--20762368	4	14.5	4	77	15	54	54	0	0	45	0.99
20762311--20762368	30	1.9	31	86	10	84	55	0	0	44	0.99
20762323--20762366	22	2.0	22	90	0	70	54	0	0	45	0.99
20762688--20762719	3	10.7	3	93	0	55	0	31	0	68	0.90
20767033--20767102	25	2.7	26	81	14	83	55	1	0	42	1.08
20767033--20767130	30	3.4	29	72	18	78	54	1	0	44	1.07
20767057--20767138	39	2.2	39	79	16	93	53	1	0	45	1.08
20767067--20767137	18	3.8	19	75	14	67	52	1	0	46	1.09
20768195--20768251	28	2.0	30	83	13	75	54	0	0	45	0.99
20768205--20768265	29	2.1	29	82	17	74	59	0	0	40	0.98
20768226--20768268	9	4.8	9	80	8	52	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20773730--20773828	45	2.2	45	85	0	135	25	8	6	60	1.48
20774120--20774166	24	1.9	25	86	4	69	46	6	4	42	1.48
20782150--20782191	19	2.2	19	83	8	50	4	9	4	80	0.99
20782585--20782633	10	4.7	10	80	7	53	63	0	0	36	0.95
20782585--20782631	22	2.0	22	92	8	76	61	0	0	38	0.96
20782583--20782639	12	4.7	12	77	18	64	64	0	0	35	0.93
20786261--20786294	2	17.5	2	93	6	61	50	0	0	50	1.00
20788333--20788376	9	4.9	9	85	0	52	34	47	0	18	1.49
20789274--20789322	22	2.2	22	85	10	64	61	0	0	38	0.96
20789274--20789325	23	2.3	23	86	6	70	59	0	0	40	0.97
20793610--20793646	3	12.3	3	100	0	74	67	0	0	32	0.91
20793645--20793688	3	14.7	3	95	0	79	34	2	0	63	1.07
20793685--20793715	4	7.8	4	100	0	62	48	0	0	51	1.00
20801306--20801365	13	4.5	13	76	14	50	68	0	0	31	0.90
20801403--20801468	18	3.4	19	73	22	66	50	0	0	50	1.00
20801360--20801445	31	2.8	31	72	19	81	51	1	0	47	1.08
20801427--20801490	33	2.0	32	90	3	101	48	0	1	50	1.10
20802545--20802607	29	2.2	29	91	0	99	55	7	7	28	1.57
20802553--20802619	29	2.3	29	81	0	80	55	10	8	25	1.63
20803192--20803233	22	1.9	22	85	0	57	45	4	0	50	1.23
20806933--20806979	23	2.0	23	84	8	60	65	4	0	29	1.11
20813685--20813757	28	2.6	28	91	0	110	54	6	13	24	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20814166--20814242	12	6.3	12	71	16	52	48	1	2	48	1.23
20816286--20816348	31	2.0	31	85	11	85	49	0	1	49	1.10
20816298--20816348	13	4.1	12	78	12	50	54	0	0	45	0.99
20822028--20822077	6	8.3	6	78	8	57	46	2	2	50	1.24
20824039--20824090	22	2.6	19	78	18	61	42	0	0	57	0.98
20828885--20828953	30	2.3	30	89	0	102	49	1	13	36	1.51
20837955--20837993	20	2.0	20	89	0	60	46	2	0	51	1.14
20840704--20840775	20	3.6	20	67	14	58	25	11	23	40	1.87
20841204--20841246	22	2.0	22	86	9	61	51	9	0	39	1.34
20843052--20844153	231	4.8	231	85	5	1339	44	10	7	38	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109