genome.fa.s35.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  2  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138503--140048	647	2.4	650	79	5	1598	37	7	14	40	1.73
138490--139902	517	2.7	517	76	10	1209	38	7	14	40	1.73
140165--140783	129	4.8	129	73	11	385	36	6	16	40	1.74
141924--141978	18	3.1	18	72	15	51	18	5	9	67	1.38
142189--142232	17	2.8	16	83	16	56	77	2	0	20	0.88
143702--143778	37	2.1	38	85	2	102	23	15	19	41	1.89
143870--143943	26	2.7	27	80	14	73	22	5	14	56	1.59
144041--144102	23	2.7	23	85	7	72	32	1	0	66	1.02
144164--144311	75	2.0	75	85	1	199	33	10	5	51	1.58
145438--145476	12	3.2	12	85	7	51	2	12	2	82	0.89
145603--145666	28	2.2	28	78	10	76	3	12	7	76	1.11
146103--146134	3	10.7	3	100	0	64	34	0	0	65	0.93
146497--146708	43	5.0	42	78	6	205	29	12	16	40	1.86
146497--146691	85	2.3	85	80	5	241	29	11	17	41	1.84
147880--147946	7	8.7	7	75	15	53	17	2	1	77	0.97
147886--147946	23	2.7	22	80	12	70	18	3	1	77	0.99
148099--148160	19	3.2	19	80	11	72	29	3	9	58	1.46
148170--148220	20	2.5	21	87	9	79	29	3	11	54	1.54
148119--148216	52	1.9	51	89	2	133	28	3	13	55	1.53
149258--149293	19	1.9	19	88	5	56	30	22	22	25	1.99
152284--152388	18	5.2	18	75	22	102	57	0	0	41	1.05
152290--152424	39	3.3	39	81	11	105	58	1	1	38	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152439--152505	19	3.7	19	70	22	63	44	0	0	55	0.99
152502--152565	26	2.5	26	90	5	96	50	1	0	48	1.10
152486--152565	9	9.3	9	69	18	55	47	1	0	51	1.08
154329--154359	15	2.1	15	93	0	53	6	9	0	83	0.79
154468--154501	17	1.9	18	88	5	52	70	0	11	17	1.16
155580--155617	19	2.0	19	100	0	76	10	31	26	31	1.90
155465--155739	138	2.0	138	85	1	372	16	22	18	42	1.89
155599--155904	119	2.6	119	81	3	339	16	22	17	43	1.88
156202--156251	3	16.7	3	100	0	100	32	0	0	68	0.90
157426--157563	10	13.8	10	67	19	65	18	5	2	73	1.15
157484--157535	22	2.4	21	79	20	54	13	7	1	76	1.07
157428--157550	46	2.6	45	80	12	124	19	4	3	73	1.14
157514--157578	16	3.9	17	74	13	55	16	9	0	73	1.07
157531--157574	23	1.9	23	86	9	63	15	9	0	75	1.05
157582--157756	60	2.9	59	90	4	271	47	5	13	33	1.67
162826--163380	42	13.3	42	94	0	927	23	17	22	36	1.95
163424--163534	1	111.0	1	70	0	60	83	12	0	2	0.79
163424--163523	40	2.4	41	81	15	109	84	12	1	3	0.80
163424--163534	50	2.2	51	84	12	140	83	12	0	2	0.79
163694--163740	6	7.8	6	92	7	78	19	0	0	80	0.70
163793--163880	4	22.2	4	70	21	53	22	1	2	73	1.01
163793--163829	13	2.9	14	84	15	53	18	0	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163789--163878	43	2.1	42	83	6	110	22	1	2	74	0.99
163779--163858	22	3.6	22	77	5	72	26	2	1	70	1.08
164773--164915	46	3.1	45	70	15	112	18	3	3	74	1.10
164790--164928	10	13.8	10	69	17	74	18	5	2	73	1.14
164848--164915	19	3.3	21	76	15	54	14	5	1	77	1.02
164867--164915	19	2.7	18	78	9	55	14	4	2	79	0.97
164896--164939	23	1.9	23	86	9	63	15	9	0	75	1.05
164947--165243	60	5.0	58	86	6	407	45	7	12	34	1.70
165721--165749	3	9.7	3	100	0	58	34	0	0	65	0.93
168842--168896	26	2.2	26	83	6	69	47	1	1	49	1.23
170722--170771	21	2.4	21	82	0	55	56	6	4	34	1.43
170984--171021	3	12.7	3	100	0	76	65	0	0	34	0.93
176004--176042	2	20.0	2	86	5	53	53	2	0	43	1.14
192722--192789	33	2.1	33	91	0	109	26	7	16	50	1.71
194261--194340	17	4.8	17	75	3	72	16	8	31	43	1.78
194266--194342	33	2.3	34	81	2	102	16	10	29	42	1.82
197359--197402	22	2.1	22	87	8	65	20	2	11	65	1.35
199174--199209	14	2.6	14	90	0	54	33	8	2	55	1.44
200122--200152	5	6.4	5	92	7	55	38	0	0	61	0.96
201281--201440	45	3.7	43	79	5	133	38	13	9	39	1.76
201177--201454	44	6.4	44	74	7	201	36	13	8	41	1.76
201214--201464	129	1.9	129	80	6	276	37	13	8	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202900--203042	64	2.2	64	84	8	184	37	10	13	39	1.79
203328--203449	63	1.9	64	83	5	158	39	9	18	32	1.83
203280--203459	64	2.8	64	77	9	172	39	11	15	33	1.83
203953--204142	60	3.1	61	86	3	258	30	13	16	38	1.88
203953--204178	62	3.7	62	81	2	233	31	14	15	38	1.87
203953--204178	122	1.9	121	84	0	308	31	14	15	38	1.87
204440--204478	19	2.0	20	95	5	71	15	53	5	25	1.62
205404--205430	7	3.9	7	100	0	54	55	0	0	44	0.99
205495--205547	12	4.5	12	79	13	65	37	1	0	60	1.08
208027--208093	27	2.3	30	76	19	70	61	0	4	34	1.16
208478--208507	2	15.0	2	92	0	51	46	0	3	50	1.18
208663--208698	2	18.0	2	94	0	63	47	0	0	52	1.00
208762--209146	203	1.9	204	98	0	745	31	36	7	25	1.83
219234--219275	10	4.3	10	82	14	52	59	21	9	9	1.57
229766--229811	20	2.3	20	92	0	74	34	15	8	41	1.78
232685--232709	12	2.1	12	100	0	50	32	16	16	36	1.90
232926--232967	22	1.9	22	100	0	84	23	4	11	59	1.51
234350--234415	26	2.6	25	88	7	105	50	0	0	50	1.00
234358--234423	15	4.5	15	73	24	61	50	0	0	50	1.00
241760--241814	27	2.0	27	96	0	101	54	25	0	20	1.44
252549--252577	2	14.5	2	100	0	58	48	0	0	51	1.00
253173--253225	25	2.1	25	89	0	79	32	1	13	52	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253971--254005	17	2.1	17	88	0	52	71	0	0	28	0.86
254023--254049	2	13.5	2	100	0	54	51	0	0	48	1.00
257048--257203	75	2.0	78	84	7	203	23	3	10	61	1.45
258902--258940	9	4.4	9	87	3	53	35	2	0	61	1.10
269387--269433	22	2.1	22	84	0	58	31	4	6	57	1.43
269561--269609	26	1.9	24	84	12	62	59	2	0	38	1.09
271454--271509	26	2.1	26	90	6	85	8	5	10	75	1.19
271519--271556	20	1.9	20	88	0	58	65	2	2	28	1.19
274175--274216	21	2.0	21	85	0	57	73	2	21	2	1.06
274909--274938	13	2.2	14	94	5	53	83	0	3	13	0.77
274907--274940	13	2.7	12	86	13	50	79	0	2	17	0.86
276440--276483	20	2.2	20	84	8	54	63	2	13	20	1.40
278329--278391	28	2.2	28	85	0	81	68	4	3	23	1.24
278349--278391	20	2.2	20	82	0	50	72	4	2	20	1.14
280053--280081	14	2.0	15	93	6	51	20	0	10	68	1.18
288049--288084	14	2.6	14	86	0	54	77	0	8	13	0.98
293885--293944	29	2.0	30	90	9	97	40	8	18	33	1.80
296737--296780	12	3.8	12	78	6	54	52	11	0	36	1.38
296737--296811	11	6.6	11	76	10	71	49	14	0	36	1.44
296737--296787	18	2.9	17	76	23	52	50	11	0	37	1.39
296747--296816	23	3.2	22	76	13	72	50	14	0	35	1.43
296757--296821	33	2.0	33	87	0	94	47	13	0	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296847--296881	11	3.3	10	88	11	52	54	5	0	40	1.24
297979--298076	48	2.0	48	84	3	126	32	8	7	52	1.58
298384--298438	12	4.6	12	74	0	56	43	40	1	14	1.56
299010--299128	44	2.7	44	85	7	168	38	19	23	18	1.93
300288--300313	2	13.0	2	100	0	52	50	0	0	50	1.00
310450--310479	14	2.1	14	93	0	51	43	0	3	53	1.17
310593--310658	26	2.6	26	88	4	100	45	0	4	50	1.22
310634--310718	36	2.4	35	78	18	88	49	0	1	49	1.08
310650--310699	17	2.7	20	73	23	54	48	0	2	50	1.12
310681--310726	21	2.2	22	80	11	60	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109