genome.fa.s35.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  42  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6898639--6898694	20	2.8	19	86	7	76	0	16	1	82	0.76
6898639--6898694	19	2.9	19	86	2	76	0	16	1	82	0.76
6898633--6898704	24	3.0	25	73	17	71	1	18	1	79	0.88
6900120--6900164	11	3.9	12	82	8	58	71	2	0	26	0.98
6900124--6900154	12	2.7	11	90	9	53	70	3	0	25	1.02
6901064--6901099	12	2.8	14	80	20	51	63	0	0	36	0.94
6901053--6901095	12	3.6	12	79	20	54	62	0	0	37	0.95
6901053--6901101	24	2.0	24	84	7	64	63	0	0	36	0.95
6901816--6901868	6	8.5	6	79	8	61	43	0	5	50	1.25
6905348--6905410	21	3.0	22	77	17	71	41	1	0	57	1.08
6905436--6905506	29	2.5	29	77	6	74	52	1	0	46	1.09
6905381--6905492	41	2.7	41	76	13	106	48	0	1	50	1.11
6905989--6906018	12	2.6	11	90	10	51	60	0	0	40	0.97
6905991--6906016	12	2.2	12	100	0	52	53	0	0	46	1.00
6905971--6906018	23	2.0	24	84	11	64	58	0	0	41	0.98
6909379--6909415	14	2.9	14	80	19	53	54	0	0	45	1.00
6909374--6909413	19	2.1	19	85	0	53	50	0	0	50	1.00
6909429--6909463	2	17.5	2	100	0	70	48	0	0	51	1.00
6909774--6909820	22	2.1	22	88	11	69	40	6	8	44	1.60
6909870--6909938	34	2.1	34	86	5	97	46	4	10	39	1.58
6917961--6918012	24	2.2	24	100	0	104	30	7	3	57	1.45
6925749--6925796	20	2.3	21	89	3	71	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6930098--6930122	2	12.5	2	100	0	50	48	0	0	52	1.00
6938034--6938058	13	1.9	13	100	0	50	24	16	36	24	1.94
6939054--6939093	11	3.6	11	82	0	53	25	0	25	50	1.50
6939053--6939095	22	2.0	22	95	0	77	25	0	25	48	1.51
6939127--6939274	50	2.9	52	82	8	169	44	7	19	28	1.77
6939127--6939274	52	2.9	50	83	6	163	44	7	19	28	1.77
6939759--6939843	31	2.7	31	88	0	125	29	23	23	23	1.99
6940155--6940194	11	3.6	11	93	0	71	22	0	27	50	1.50
6940230--6940346	52	2.2	52	84	1	144	47	5	17	29	1.72
6942703--6942741	19	2.1	19	85	0	51	41	2	5	51	1.38
6942807--6942886	27	2.9	29	75	9	76	50	1	0	48	1.08
6945231--6945281	24	2.1	24	82	7	59	25	3	3	66	1.26
6945858--6945937	33	2.4	33	83	6	90	48	2	3	45	1.33
6961181--6961232	13	4.2	13	75	7	54	48	0	1	50	1.12
6961177--6961290	42	2.7	42	81	11	119	50	0	0	48	1.13
6965834--6966046	110	1.9	110	97	0	399	50	13	13	22	1.76
6969545--6969615	20	3.4	21	77	16	76	46	5	2	45	1.41
6969845--6969895	20	2.6	20	74	22	54	66	1	0	31	1.03
6969885--6969925	15	2.7	16	81	11	50	68	9	0	21	1.18
6970010--6970057	25	1.9	25	82	0	60	31	2	4	62	1.26
6970134--6970175	21	2.0	21	100	0	84	38	4	4	52	1.44
6970151--6970223	36	2.0	37	83	2	94	43	1	2	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6970212--6970351	18	7.8	18	70	6	70	42	2	2	52	1.28
6973743--6973798	22	2.6	21	83	10	69	57	0	5	37	1.22
6973896--6974138	18	14.6	17	69	23	146	56	1	0	41	1.15
6973895--6974162	33	7.8	36	68	23	138	56	1	0	41	1.14
6973935--6974162	8	29.9	8	65	23	73	56	1	0	41	1.11
6973914--6974145	66	3.5	65	76	15	180	56	1	0	41	1.13
6973989--6974142	35	4.6	33	77	15	124	55	1	0	42	1.12
6974101--6974176	26	3.2	23	79	9	64	60	0	1	38	1.05
6974193--6974321	19	6.6	18	68	19	64	44	0	0	54	1.05
6974190--6974265	18	4.1	19	68	13	59	43	1	0	55	1.08
6974252--6974309	9	6.6	9	75	18	59	46	0	0	53	1.00
6974249--6974308	25	2.4	26	88	5	88	45	0	0	55	0.99
6981997--6982027	12	2.6	12	94	0	53	25	6	38	29	1.81
6997156--6997190	16	2.2	16	94	0	61	20	17	17	45	1.85
6999356--6999404	13	3.7	13	88	2	71	69	4	2	24	1.17
7005267--7005417	78	1.9	78	85	7	209	44	1	8	45	1.42
7008866--7008999	68	2.0	68	87	0	196	25	17	23	34	1.96
7010195--7010268	3	24.7	3	80	0	58	20	45	0	33	1.51
7010195--7010256	18	3.4	18	86	0	79	17	46	0	35	1.49
7010198--7010268	24	3.0	24	87	0	106	19	46	0	33	1.50
7012764--7012820	21	2.6	21	78	13	62	52	0	0	47	1.00
7012764--7012820	22	2.7	20	76	12	60	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7013002--7013036	17	2.1	17	100	0	70	22	22	8	45	1.79
7015660--7015703	21	2.1	21	82	0	52	25	2	2	70	1.10
7022011--7022156	35	4.3	35	77	17	139	34	10	14	39	1.81
7022033--7022088	26	2.2	26	93	0	94	35	7	12	44	1.70
7022011--7022125	61	1.9	61	90	0	185	34	9	13	42	1.76
7022351--7022625	42	6.5	42	79	5	277	23	10	24	42	1.85
7022351--7022625	126	2.2	126	84	4	367	23	10	24	42	1.85
7022351--7022663	84	3.7	83	79	8	294	23	11	22	42	1.85
7022351--7022662	126	2.5	124	81	6	342	23	10	22	42	1.85
7022645--7022837	33	5.6	32	74	16	136	26	15	13	44	1.83
7022596--7023146	76	7.5	75	80	10	444	25	14	16	42	1.87
7022710--7022837	33	3.9	32	85	5	157	27	14	10	46	1.78
7022977--7023354	42	9.4	42	69	16	142	25	11	19	42	1.85
7022776--7023162	74	5.2	74	85	4	440	25	14	16	43	1.86
7023194--7023333	48	3.0	47	74	16	141	25	11	18	44	1.83
7023367--7023457	33	2.8	33	86	0	119	28	15	16	39	1.89
7023671--7024135	54	8.9	54	82	4	454	28	11	18	41	1.85
7023657--7024061	158	2.6	156	87	4	559	27	10	18	42	1.84
7024075--7024249	61	3.0	62	80	12	185	33	9	17	40	1.82
7024135--7024272	54	2.8	46	76	19	143	32	10	17	39	1.83
7025404--7025465	18	3.3	20	72	14	53	62	12	3	20	1.43
7026935--7026993	29	2.1	29	87	3	84	66	1	0	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7030884--7030920	11	3.3	11	88	3	56	27	0	0	72	0.84
7030877--7030920	22	2.0	23	81	4	54	31	0	0	68	0.90
7030844--7030917	27	2.8	27	79	2	78	36	0	0	63	0.95
7037547--7037606	17	3.6	16	73	13	50	25	1	6	66	1.25
7038041--7038081	19	2.3	19	87	8	59	41	14	4	39	1.67
7040327--7040424	37	2.6	36	82	7	99	40	0	2	57	1.10
7040345--7040424	36	2.2	36	84	8	99	38	0	1	60	1.05
7040401--7040459	28	2.0	28	84	12	75	32	0	0	67	0.91
7040401--7040459	30	2.0	30	84	12	79	32	0	0	67	0.91
7040565--7040606	18	2.4	18	84	4	59	30	4	0	64	1.14
7040609--7040635	13	2.1	13	100	0	54	29	14	7	48	1.71
7050385--7050414	14	2.1	15	93	6	53	43	3	13	40	1.60
7063727--7063774	23	2.0	24	84	11	64	50	2	0	47	1.12
7063783--7063852	35	2.0	35	91	0	113	32	20	4	42	1.71
7066947--7066980	11	3.0	11	91	4	50	29	2	0	67	1.05
7079106--7079176	29	2.3	32	79	13	78	59	1	2	36	1.21
7087562--7087586	2	12.5	2	100	0	50	0	48	0	52	1.00
7097839--7097891	27	2.0	27	85	7	72	58	1	3	35	1.27
7103569--7103598	3	9.7	3	92	7	51	30	0	0	70	0.88
7103629--7103675	15	3.2	14	82	8	58	74	2	2	21	1.03
7103635--7103704	5	13.2	5	76	18	54	72	2	4	20	1.14
7104531--7104710	36	4.5	39	74	16	138	56	3	4	36	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7104531--7104590	3	20.0	3	100	0	120	66	0	0	33	0.92
7106210--7106261	25	2.1	25	82	7	61	34	1	1	61	1.18
7106220--7106269	25	2.0	26	88	4	75	40	0	0	60	0.97
7106228--7106280	22	2.3	24	83	6	74	45	0	0	54	0.99
7106308--7106349	10	4.3	10	78	6	50	69	0	0	30	0.89
7106310--7106349	19	2.1	19	90	9	64	70	0	0	30	0.88
7106440--7106479	11	4.0	10	90	9	55	37	0	0	62	0.95
7106441--7106482	9	4.3	9	88	11	57	33	0	0	66	0.92
7106441--7106482	10	4.2	10	87	9	59	33	0	0	66	0.92
7106441--7106482	19	2.2	20	91	4	68	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109