genome.fa.s35.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  53  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10245240--10245323	33	2.6	32	81	7	89	45	3	1	50	1.27
10245381--10245422	17	2.4	18	82	17	54	57	0	2	40	1.12
10245397--10245443	21	2.2	22	88	3	69	61	0	0	38	0.96
10245401--10245454	13	4.6	12	73	19	51	59	0	0	40	0.98
10245531--10245569	16	2.3	16	86	8	51	46	2	7	43	1.46
10245584--10245653	22	3.4	21	76	9	65	44	1	4	50	1.30
10245585--10245656	29	2.5	29	73	13	69	45	1	4	48	1.30
10246579--10246616	16	2.4	16	86	8	51	71	5	0	23	1.07
10246728--10246814	28	3.0	28	78	6	77	66	0	1	32	0.99
10258880--10258915	16	2.2	16	100	0	72	22	11	25	41	1.86
10267025--10267055	2	15.5	2	100	0	62	51	0	48	0	1.00
10301507--10301540	18	1.9	18	88	5	52	38	0	0	61	0.96
10301722--10301776	21	2.5	23	82	8	78	50	7	0	41	1.30
10301722--10301773	22	2.4	22	83	6	70	51	7	0	40	1.30
10318051--10318083	3	11.0	3	93	0	57	66	3	0	30	1.06
10319038--10319078	21	2.0	20	90	4	64	34	0	2	63	1.08
10319082--10319109	3	9.3	3	100	0	56	67	0	0	32	0.91
10319334--10319370	19	1.9	19	88	0	56	43	5	10	40	1.63
10319624--10319665	21	2.0	21	95	0	75	47	16	0	35	1.47
10319874--10319948	29	2.6	29	86	0	96	34	12	20	33	1.89
10328625--10328713	28	3.2	28	96	0	160	31	31	16	20	1.95
10329335--10329364	15	2.0	15	93	0	51	40	23	13	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10336756--10336801	20	2.4	19	78	7	56	43	4	2	50	1.34
10337663--10337710	11	4.3	11	80	12	53	33	4	0	62	1.14
10338144--10338191	21	2.3	22	78	10	55	54	6	0	39	1.26
10339046--10339080	17	2.1	17	89	5	54	60	0	2	37	1.12
10339571--10339629	30	1.9	31	89	3	93	42	10	5	42	1.60
10349247--10349294	12	4.0	12	76	10	53	39	0	4	56	1.19
10361121--10361169	21	2.3	22	82	3	55	28	2	28	40	1.68
10372159--10372183	3	8.3	3	100	0	50	36	64	0	0	0.94
10373805--10373863	19	3.2	19	76	11	59	42	1	3	52	1.28
10379611--10379645	18	2.0	18	94	5	63	11	11	22	54	1.68
10380846--10380882	6	6.2	6	96	0	56	43	0	51	5	1.24
10381030--10381061	2	16.0	2	100	0	64	50	0	0	50	1.00
10380975--10381041	34	2.0	34	97	2	127	61	0	14	23	1.34
10385321--10385370	25	2.0	25	100	0	100	40	36	4	20	1.71
10389618--10389667	25	2.0	25	100	0	100	40	36	4	20	1.71
10399450--10399689	117	2.1	117	98	0	462	43	10	21	25	1.83
10405308--10405337	16	1.9	16	93	6	53	73	3	0	23	0.98
10406534--10406589	15	4.0	14	78	17	55	39	0	1	58	1.08
10406533--10406584	23	2.3	23	86	3	79	36	0	1	61	1.07
10410736--10410769	18	1.9	17	94	5	59	70	0	0	29	0.87
10410730--10410770	20	2.0	21	85	4	57	68	0	2	29	1.03
10413798--10413853	13	4.4	13	72	4	51	41	7	1	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10413808--10413856	25	2.0	25	91	0	80	40	8	2	48	1.44
10422290--10422323	2	17.5	2	93	6	61	50	0	0	50	1.00
10442303--10442337	18	1.9	18	94	0	61	20	8	42	28	1.81
10442852--10442896	19	2.4	19	80	0	54	68	0	2	28	1.01
10443125--10443205	38	2.2	36	84	6	108	54	0	0	45	0.99
10443174--10443229	25	2.2	25	87	3	76	62	0	0	37	0.95
10447665--10447722	29	2.0	29	86	0	80	31	10	10	48	1.71
10448020--10448044	2	12.5	2	100	0	50	52	0	0	48	1.00
10448047--10448087	20	2.0	20	85	0	55	46	4	0	48	1.23
10458207--10458249	11	3.7	11	87	9	59	65	0	2	32	1.06
10458207--10458267	24	2.5	24	86	0	77	65	0	3	31	1.09
10458231--10458260	13	2.3	13	94	0	51	73	0	0	26	0.84
10458200--10458267	11	5.7	11	78	14	55	63	0	2	33	1.10
10464389--10464444	25	2.2	26	87	3	78	35	3	3	57	1.34
10468577--10468606	14	2.1	14	100	0	60	40	6	26	26	1.81
10471887--10471926	20	2.0	20	95	0	71	47	10	12	30	1.74
10472885--10472947	26	2.4	26	76	12	74	15	20	19	44	1.87
10474173--10474223	26	2.0	26	88	11	79	49	5	7	37	1.56
10474278--10474319	21	2.0	21	90	0	66	38	19	9	33	1.84
10476343--10476373	16	1.9	16	100	0	62	19	22	19	38	1.93
10479338--10479399	32	1.9	33	86	3	90	50	11	1	37	1.48
10479339--10479408	32	2.2	32	82	7	79	51	11	2	34	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10495864--10495902	20	2.0	20	84	0	51	43	10	5	41	1.61
10496397--10496477	40	2.0	40	95	0	144	30	23	11	34	1.90
10505490--10505542	20	2.8	18	72	10	52	49	0	0	50	1.00
10505508--10505569	31	2.0	31	83	3	79	48	4	1	45	1.33
10507560--10507599	21	2.0	20	90	5	62	32	7	7	52	1.58
10507865--10507928	22	2.9	22	77	9	58	42	4	6	46	1.49
10507986--10508039	22	2.5	22	80	11	58	40	9	5	44	1.60
10508038--10508500	22	21.0	22	68	13	110	37	9	5	47	1.59
10508265--10508476	90	2.4	89	79	9	209	38	8	4	48	1.55
10508434--10508537	44	2.4	44	81	0	109	36	12	3	47	1.60
10511462--10511551	22	4.1	21	70	9	65	38	8	5	46	1.59
10511667--10511751	22	3.9	22	77	9	75	37	10	4	47	1.59
10511867--10511959	21	4.3	21	72	11	73	35	7	6	50	1.56
10513453--10513477	12	2.1	12	100	0	50	48	0	0	52	1.00
10514196--10514246	17	3.1	17	80	2	59	43	3	0	52	1.19
10515597--10515632	16	2.2	16	90	9	56	36	2	0	61	1.11
10523529--10523598	26	2.7	27	79	14	78	64	0	1	34	1.03
10525731--10525812	23	3.6	21	77	14	74	39	7	4	48	1.52
10528803--10528849	24	2.0	24	82	0	58	17	12	8	61	1.55
10531556--10531589	11	3.0	11	91	4	50	61	0	2	35	1.11
10532273--10532341	26	2.8	26	80	10	74	44	4	0	50	1.21
10532661--10532722	21	3.0	20	80	17	58	67	1	8	22	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10537883--10537914	2	16.0	2	100	0	64	50	0	0	50	1.00
10540329--10540353	12	2.1	12	100	0	50	60	0	0	40	0.97
10541304--10541332	14	2.0	15	93	6	51	89	6	0	3	0.57
10543733--10543785	5	10.6	5	81	0	52	64	0	33	1	1.05
10543737--10543780	20	2.2	20	87	0	61	61	0	36	2	1.09
10544910--10544951	11	3.8	11	93	0	75	21	0	28	50	1.49
10544909--10544951	22	2.0	22	100	0	86	23	0	27	48	1.51
10544976--10545132	52	3.0	52	86	3	192	39	8	26	26	1.84
10549725--10549769	23	2.0	23	82	8	56	40	0	2	57	1.11
10550798--10550827	12	2.4	12	94	5	51	50	0	0	50	1.00
10552079--10552172	41	2.2	41	83	9	111	25	4	5	64	1.33
10552202--10552239	20	1.9	20	84	10	51	76	2	0	21	0.91
10559962--10560051	42	2.2	40	86	9	128	24	3	5	66	1.28
10559962--10560051	41	2.2	41	86	9	130	24	3	5	66	1.28
10560470--10560507	10	3.8	10	90	10	60	63	21	2	13	1.42
10560919--10560977	3	19.7	3	86	6	84	71	0	1	27	0.96
10561963--10562009	24	2.0	24	86	0	67	27	10	4	57	1.51
10565439--10565594	52	3.0	50	82	5	177	30	16	5	46	1.70
10565904--10565958	25	2.2	25	86	0	74	14	32	12	40	1.84
10571623--10571651	12	2.3	13	94	5	51	0	13	13	72	1.13
10578572--10578602	2	15.5	2	100	0	62	48	0	0	51	1.00
10583353--10583391	3	13.0	3	100	0	78	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10583390--10583432	3	14.7	3	95	4	79	32	0	0	67	0.91
10583549--10583578	3	10.0	3	100	0	60	33	0	0	66	0.92
10583659--10583696	2	19.0	2	100	0	76	50	0	0	50	1.00
10583362--10583677	145	2.1	144	85	12	403	41	9	4	45	1.56
10590022--10590055	2	17.0	2	100	0	68	50	0	0	50	1.00
10590428--10590467	2	20.0	2	100	0	80	50	0	0	50	1.00
10590906--10590943	16	2.4	16	86	8	51	63	0	0	36	0.95
10598147--10598236	33	2.8	30	78	13	92	65	4	1	28	1.19
10598164--10598236	29	2.7	27	80	15	80	67	1	1	30	1.08
10598162--10598250	30	3.0	30	85	6	110	65	2	2	30	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109